BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3510875.2.1
(707 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. v... 161 4e-038
gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke devel... 157 6e-037
gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke devel... 157 6e-037
gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA li... 157 6e-037
gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA li... 157 6e-037
gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. v... 157 6e-037
gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. v... 157 6e-037
gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA,... 157 6e-037
gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA,... 157 6e-037
gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hyd... 157 6e-037
gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hyd... 157 6e-037
gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. v... 155 2e-036
gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. v... 155 2e-036
gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. v... 155 2e-036
gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 ... 147 6e-034
gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. v... 147 6e-034
gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachi... 143 9e-033
gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subs... 141 4e-032
gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. v... 141 4e-032
gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachi... 139 1e-031
gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots... 137 6e-031
gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day ger... 135 2e-030
gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm librar... 135 2e-030
gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa... 129 1e-028
gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-a... 125 2e-027
gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedl... 113 8e-024
gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachi... 107 5e-022
gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachi... 107 5e-022
gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-a... 107 5e-022
gb|BU983569.1|BU983569 HA30C20r HA Hordeum vulgare subsp. v... 107 5e-022
gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. v... 107 5e-022
gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm libra... 96 2e-018
gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, n... 94 7e-018
gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. v... 94 7e-018
gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. v... 88 5e-016
gb|BI779199.2|BI779199 EBro01_SQ003_E21_R root, 3 week, hyd... 70 1e-010
gb|BM096809.2|BM096809 EBma07_SQ001_L15_R maternal, 21 DPA,... 64 7e-009
gb|BQ763515.1|BQ763515 EBro02_SQ008_J13_R root, 3 week, hyd... 58 4e-007
gb|BQ765646.1|BQ765646 EBro03_SQ007_C23_R root, 3 week, wat... 58 4e-007
gb|BQ768452.1|BQ768452 EBro08_SQ011_C19_R root, 3 week, dro... 58 4e-007
gb|BM096868.2|BM096868 EBma07_SQ001_P07_R maternal, 21 DPA,... 56 2e-006
gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedl... 52 3e-005
gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, dro... 52 3e-005
gb|BU982849.1|BU982849 HA27M16r HA Hordeum vulgare subsp. v... 50 1e-004
gb|BQ471570.1|BQ471570 HV02N06r HV Hordeum vulgare subsp. v... 48 4e-004
gb|BQ664314.1|BQ664314 HV02N06u HV Hordeum vulgare subsp. v... 48 4e-004
gb|BI949982.1|BI949982 HVSMEl0017H22f Hordeum vulgare spike... 38 0.38
>gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. vulgare cDNA clone HV02G18
5-PRIME, mRNA sequence
Length = 572
Score = 161 bits (81), Expect = 4e-038
Identities = 222/269 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||| |||| |||||| |||| ||||||||| ||||| ||||||||||||| |||
Sbjct: 555 gccttaacgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatg 496
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 495 gtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctc 436
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| ||| |||||| |||
Sbjct: 435 atctccctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttg 376
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| || ||||| ||||| |||||||||||| ||||||||||||||| || |||||||
Sbjct: 375 tagtccccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtcc 316
Query: 504 gcgaacgtgtaggtgccctgggcgcggcc 532
|||||||||||||| ||||| ||||||||
Sbjct: 315 gcgaacgtgtaggtcccctgcgcgcggcc 287
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 237 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 178
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 177 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 128
>gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10V 5',
mRNA sequence
Length = 668
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 589 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 530
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 529 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 470
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 469 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 410
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 409 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 350
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 349 gcgaacgtgtaggtcccctgcgcgcggcccacctc 315
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 271 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 212
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 211 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 152
Query: 690 t 690
|
Sbjct: 151 t 151
>gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10u 3',
mRNA sequence
Length = 579
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 164 gccttgacgtaaacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 223
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 224 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 283
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 284 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 343
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 344 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 403
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 404 gcgaacgtgtaggtcccctgcgcgcggcccacctc 438
>gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 5', mRNA sequence
Length = 566
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 404 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 345
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 344 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 285
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 284 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 225
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 224 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 165
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 164 gcgaacgtgtaggtcccctgcgcgcggcccacctc 130
Score = 65.9 bits (33), Expect = 2e-009
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 86 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 27
Query: 630 gnctgcgc 637
| ||||||
Sbjct: 26 gcctgcgc 19
>gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 3', mRNA sequence
Length = 519
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 126 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 185
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 186 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 245
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 246 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 305
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 306 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 365
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 366 gcgaacgtgtaggtcccctgcgcgcggcccacctc 400
Score = 65.9 bits (33), Expect = 2e-009
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 444 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 503
Query: 630 gnctgcgc 637
| ||||||
Sbjct: 504 gcctgcgc 511
>gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
5-PRIME, mRNA sequence
Length = 565
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 564 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 505
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 504 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 445
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 444 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 385
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 384 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 325
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 324 gcgaacgtgtaggtcccctgcgcgcggcccacctc 290
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 246 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 187
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 186 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 127
Query: 690 t 690
|
Sbjct: 126 t 126
>gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
3-PRIME, mRNA sequence
Length = 510
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 121 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 180
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 181 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 240
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 241 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 300
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 301 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 360
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 361 gcgaacgtgtaggtcccctgcgcgcggcccacctc 395
Score = 65.9 bits (33), Expect = 2e-009
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 439 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 498
Query: 630 gnctgcgc 637
| ||||||
Sbjct: 499 gcctgcgc 506
>gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_J22 5', mRNA sequence
Length = 634
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 559 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 500
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 499 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 440
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 439 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 380
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 379 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 320
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 319 gcgaacgtgtaggtcccctgcgcgcggcccacctc 285
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 241 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 182
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 181 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 122
Query: 690 t 690
|
Sbjct: 121 t 121
>gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_C11 5', mRNA sequence
Length = 601
Score = 157 bits (79), Expect = 6e-037
Identities = 217/263 (82%)
Strand = Plus / Minus
Query: 270 acgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggtgtgc 329
|||| |||||| |||| ||||||||| ||||| ||||||||||||| |||||| ||
Sbjct: 601 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 542
Query: 330 gcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcg 389
|||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 541 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 482
Query: 390 cggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcg 449
| || | ||||||||||||||||| ||||| ||| |||||| |||| ||
Sbjct: 481 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 422
Query: 450 ccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaac 509
||||| ||||| |||||||||||| ||||||||||||||| || |||||||||||||
Sbjct: 421 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 362
Query: 510 gtgtaggtgccctgggcgcggcc 532
|||||||| ||||| ||||||||
Sbjct: 361 gtgtaggtcccctgcgcgcggcc 339
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 289 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 230
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 229 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 180
>gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_O04 5', mRNA sequence
Length = 543
Score = 157 bits (79), Expect = 6e-037
Identities = 217/263 (82%)
Strand = Plus / Minus
Query: 270 acgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggtgtgc 329
|||| |||||| |||| ||||||||| ||||| ||||||||||||| |||||| ||
Sbjct: 543 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 484
Query: 330 gcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcg 389
|||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 483 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 424
Query: 390 cggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcg 449
| || | ||||||||||||||||| ||||| ||| |||||| |||| ||
Sbjct: 423 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 364
Query: 450 ccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaac 509
||||| ||||| |||||||||||| ||||||||||||||| || |||||||||||||
Sbjct: 363 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 304
Query: 510 gtgtaggtgccctgggcgcggcc 532
|||||||| ||||| ||||||||
Sbjct: 303 gtgtaggtcccctgcgcgcggcc 281
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 231 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 172
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 171 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 122
>gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_F07 5', mRNA sequence
Length = 660
Score = 157 bits (79), Expect = 6e-037
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 561 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 502
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 501 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 442
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 441 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 382
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 381 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 322
Query: 504 gcgaacgtgtaggtgccctgggcgcggcccacctc 538
|||||||||||||| ||||| ||||||||||||||
Sbjct: 321 gcgaacgtgtaggtcccctgcgcgcggcccacctc 287
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 243 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 184
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 183 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 124
Query: 690 t 690
|
Sbjct: 123 t 123
>gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F17
5-PRIME, mRNA sequence
Length = 572
Score = 155 bits (78), Expect = 2e-036
Identities = 225/274 (82%)
Strand = Plus / Minus
Query: 265 ccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatgg 324
||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | ||
Sbjct: 572 ccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacgg 513
Query: 325 tgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctca 384
|| |||||| ||||| ||||| ||||||||||||||||| |||| |||| ||||||||
Sbjct: 512 tgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctca 453
Query: 385 tctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgt 444
|||| | || | ||||||||||||||||| ||||| || ||||||| ||||
Sbjct: 452 tctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgt 393
Query: 445 gctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccg 504
||| ||||| |||||||||||||||||| ||||||||| ||||| || |||||| |
Sbjct: 392 actccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcgg 333
Query: 505 cgaacgtgtaggtgccctgggcgcggcccacctc 538
||||||||||||| ||||| ||||||||||||||
Sbjct: 332 cgaacgtgtaggtcccctgcgcgcggcccacctc 299
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 255 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 196
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 195 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 136
Query: 690 t 690
|
Sbjct: 135 t 135
>gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. vulgare cDNA clone HA16L23
5-PRIME, mRNA sequence
Length = 540
Score = 155 bits (78), Expect = 2e-036
Identities = 189/226 (83%)
Strand = Plus / Minus
Query: 307 tggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgc 366
||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 516 tggcgccggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccgg 457
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||| ||||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct: 456 tgcccccgacgatgctcatctccctcaccgccgacagcacctcgttgcggccgtagatgg 397
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||| |||||| |||| || ||||| ||||| |||||||||||| |||||||||||
Sbjct: 396 tgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggc 337
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
|||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 336 cgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 291
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 241 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 182
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 181 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 132
>gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA23A06
5-PRIME, mRNA sequence
Length = 537
Score = 155 bits (78), Expect = 2e-036
Identities = 189/226 (83%)
Strand = Plus / Minus
Query: 307 tggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgc 366
||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 516 tggcgccggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccgg 457
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||| ||||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct: 456 tgcccccgacgatgctcatctccctcaccgccgacagcacctcgttgcggccgtagatgg 397
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||| |||||| |||| || ||||| ||||| |||||||||||| |||||||||||
Sbjct: 396 tgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggc 337
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
|||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 336 cgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 291
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 241 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 182
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 181 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 132
>gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081O22f, mRNA sequence
Length = 756
Score = 147 bits (74), Expect = 6e-034
Identities = 188/226 (83%)
Strand = Plus / Minus
Query: 307 tggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgc 366
|||||| |||||| |||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 443 tggcgcgggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccgg 384
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||| ||||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct: 383 tgcccccgacgatgctcatctccctcaccgccgacagcacctcgttgcggccgtagatgg 324
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||| |||||| |||| || ||||| ||||| |||||||||||| |||||||||||
Sbjct: 323 tgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggc 264
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
|||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 263 cgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 218
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 168 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 109
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 108 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 59
>gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA27I15
5-PRIME, mRNA sequence
Length = 587
Score = 147 bits (74), Expect = 6e-034
Identities = 188/226 (83%)
Strand = Plus / Minus
Query: 307 tggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgc 366
||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 584 tggcgccggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccgg 525
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||| |||||||||||||| || | || | ||||||||||||||||| |||||
Sbjct: 524 tgcccccgacgatgctcatatccctcaccgccgacagcacctcgttgcggccgtagatgg 465
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||| |||||| |||| || ||||| ||||| |||||||||||| |||||||||||
Sbjct: 464 tgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggc 405
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
|||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 404 cgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 359
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 309 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 250
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 249 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 200
>gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I14f, mRNA sequence
Length = 644
Score = 143 bits (72), Expect = 9e-033
Identities = 227/278 (81%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 564 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 505
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgcc---gctgccgccgacgatg 380
||| |||||| ||||| ||||| ||||||||||||||||| | |||| |||| ||||
Sbjct: 504 gtgctcgcctggacgtagccgcgagccatgcggaacttgccnncggtgcccccgaggatg 445
Query: 381 ctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccg 440
|||||||| | || | ||||||||||||||||| ||||| || |||||||
Sbjct: 444 ctcatctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgccc 385
Query: 441 ttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctgg 500
|||| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||
Sbjct: 384 ttgtactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctgg 325
Query: 501 tccgcgaacgtgtaggtgccctgggcgcggcccacctc 538
|| |||||||||||||| ||||| ||||||||||||||
Sbjct: 324 tcggcgaacgtgtaggtcccctgcgcgcggcccacctc 287
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 243 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 184
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 183 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 124
Query: 690 t 690
|
Sbjct: 123 t 123
>gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050C10F1, mRNA sequence
Length = 408
Score = 141 bits (71), Expect = 4e-032
Identities = 206/251 (82%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||| |||| |||||| |||| ||||||||| ||||| ||||||||||||| |||
Sbjct: 251 gccttaacgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatg 192
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 191 gtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctc 132
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| ||| |||||| |||
Sbjct: 131 atctccctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttg 72
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| || ||||| ||||| |||||||||||| ||||||||||||||| || |||||||
Sbjct: 71 tagtccccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtcc 12
Query: 504 gcgaacgtgta 514
|||||||||||
Sbjct: 11 gcgaacgtgta 1
>gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. vulgare cDNA clone HA02H05
5-PRIME, mRNA sequence
Length = 546
Score = 141 bits (71), Expect = 4e-032
Identities = 197/239 (82%)
Strand = Plus / Minus
Query: 300 ccggaggtggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaac 359
|||||| ||||||||||||| | |||| |||||| ||||| ||||| ||||||||||||
Sbjct: 532 ccggagttggcgccggagtccacggtgctcgcctggacgtagccgcgagccatgcggaac 473
Query: 360 ttgccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggcca 419
||||| |||| |||| |||||||||||| | || | |||||||||||||||||
Sbjct: 472 ttgcccgtgcccccgaggatgctcatctccctcaccgccgaaagcacctcgttgcggccg 413
Query: 420 aggatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatg 479
||||| || ||||||| |||| ||| ||||| |||||||||||||||||| ||||
Sbjct: 412 tagatggtcaggctgctgcccttgtactccccggcggtgaacacgaagttcatgttcatg 353
Query: 480 aggaggccgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacctc 538
||||| ||||| || |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 352 aggagcccgaaggtggcctggtcggcgaacgtgtaggtcccctgcgcgcggcccacctc 294
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 250 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 191
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 190 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 131
Query: 690 t 690
|
Sbjct: 130 t 130
>gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010J22f, mRNA sequence
Length = 659
Score = 139 bits (70), Expect = 1e-031
Identities = 187/226 (82%)
Strand = Plus / Minus
Query: 307 tggcgccggagtcgatggtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgc 366
|||||| |||||| |||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 517 tggcgcgggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccgg 458
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||| | ||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct: 457 tgccccagacgatgctcatctccctcaccgccgacagcacctcgttgcggccgtagatgg 398
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||| |||||| |||| || ||||| ||||| |||||||||||| |||||||||||
Sbjct: 397 tgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggc 338
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
|||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 337 cgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 292
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 242 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 183
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 182 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 133
>gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O16u 3', mRNA sequence
Length = 591
Score = 137 bits (69), Expect = 6e-031
Identities = 225/276 (81%), Gaps = 1/276 (0%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 288 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 347
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 348 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 407
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 408 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 467
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 468 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 527
Query: 504 gcgaacgtgtaggtgccctgggc-gcggcccacctc 538
||||||||||| || ||||| || ||||||||||||
Sbjct: 528 gcgaacgtgtangtcccctgcgcggcggcccacctc 563
>gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_L09 5', mRNA sequence
Length = 327
Score = 135 bits (68), Expect = 2e-030
Identities = 212/260 (81%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 263 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 204
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 203 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 144
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 143 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 84
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 83 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 24
Query: 504 gcgaacgtgtaggtgccctg 523
|||||||||||||| |||||
Sbjct: 23 gcgaacgtgtaggtcccctg 4
>gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL19E4 5' similar to unknown
protein, mRNA sequence
Length = 359
Score = 135 bits (68), Expect = 2e-030
Identities = 212/260 (81%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| | |
Sbjct: 263 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccacg 204
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| ||||| ||||||||||||||||| |||| |||| |||||||
Sbjct: 203 gtgctcgcctggacgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctc 144
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | ||||||||||||||||| ||||| || ||||||| |||
Sbjct: 143 atctccctcaccgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttg 84
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 83 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 24
Query: 504 gcgaacgtgtaggtgccctg 523
|||||||||||||| |||||
Sbjct: 23 gcgaacgtgtaggtcccctg 4
>gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019E17f, mRNA sequence
Length = 877
Score = 129 bits (65), Expect = 1e-028
Identities = 220/272 (80%)
Strand = Plus / Minus
Query: 267 ttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggtg 326
||||||| |||||||||| ||||||||| | | |||| ||||||||||||| ||||
Sbjct: 550 ttgacgtatacggtgtactngacgacggtcttgctggagttggcgccggagtccccggtg 491
Query: 327 tgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatc 386
|||||| | ||| ||||| ||||||||||||||||| |||| |||| ||||||||||
Sbjct: 490 ctcgcctggaggtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatc 431
Query: 387 tcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtgc 446
|| | || | |||||||||||||||| ||||| || ||||||| |||| |
Sbjct: 430 tccctcaccgccgaaagcacctcgttgcggcagtagatggtcaggctgctgcccttgtac 371
Query: 447 tcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgcg 506
|| ||||| |||||||||||||||||| ||||||||| ||||| || |||||| |||
Sbjct: 370 tccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcg 311
Query: 507 aacgtgtaggtgccctgggcgcggcccacctc 538
||||||||||| ||||| ||||||||||||||
Sbjct: 310 aacgtgtaggtcccctgcgcgcggcccacctc 279
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 235 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 176
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 175 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 116
Query: 690 t 690
|
Sbjct: 115 t 115
>gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006F02f, mRNA sequence
Length = 962
Score = 125 bits (63), Expect = 2e-027
Identities = 215/263 (81%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 276 acggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggtgtgcgcctgc 335
|||||||||||| ||||||| |||||| |||| |||||||| | |||| ||||||
Sbjct: 544 acggtgtactgg-cgacggtctcgccggagttggc-ccggagtccacggtgctcgcctgg 487
Query: 336 acgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcggacg 395
||||| ||||| ||||||||||||||||| |||| |||| |||||||||||| | ||
Sbjct: 486 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 427
Query: 396 tcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcgccggcc 455
| ||||||||||||||||| ||||| || ||||||| |||| ||| |||||
Sbjct: 426 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 367
Query: 456 gtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtag 515
|||||||||||||||||| ||||||||| ||||| || |||||| ||||||||||||
Sbjct: 366 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 307
Query: 516 gtgccctgggcgcggcccacctc 538
|| ||||| ||||||||||||||
Sbjct: 306 gtcccctgcgcgcggcccacctc 284
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 240 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 181
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 180 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 121
Query: 690 t 690
|
Sbjct: 120 t 120
>gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E19f, mRNA sequence
Length = 706
Score = 113 bits (57), Expect = 8e-024
Identities = 224/277 (80%), Gaps = 2/277 (0%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| || |||||| |||||| ||||||||||||| | |
Sbjct: 549 gccttgacgtatacggtgtactcgatgacggtctcgccggagttggcgccggagtccacg 490
Query: 324 gtg-tgcgcctgcacgtacccgcgcgccatgcggaacttgccgc-tgccgccgacgatgc 381
||| | |||||||||||| ||| | ||||||||||||||| | | |||| |||| ||||
Sbjct: 489 gtgcttcgcctgcacgtaaccgtgagccatgcggaacttggcccgtgcccccgaggatga 430
Query: 382 tcatctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgt 441
||||||| | || | ||||||||||| ||||| ||||| || ||||||| |
Sbjct: 429 tcatctccctcaccgccgaaagcacctcgttccggccgtagatggtcaggatgctgccct 370
Query: 442 tgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggt 501
||| ||| ||||| |||||||||||||||||| ||||||||| ||||| || |||||
Sbjct: 369 tgtactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggt 310
Query: 502 ccgcgaacgtgtaggtgccctgggcgcggcccacctc 538
| |||||||||||||| ||||| ||||||||||||||
Sbjct: 309 cggcgaacgtgtaggtcccctgcgcgcggcccacctc 273
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 229 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 170
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 169 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 110
Query: 690 t 690
|
Sbjct: 109 t 109
>gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O03f, mRNA sequence
Length = 668
Score = 107 bits (54), Expect = 5e-022
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
||||| |||| |||||| |||| ||||||||| ||||| ||||||||||||| |||
Sbjct: 139 gccttaacgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatg 198
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 199 gtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctc 258
Query: 384 at 385
||
Sbjct: 259 at 260
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 402 agcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcgccggccgtgaac 461
||||||||||||||||| ||||| ||| |||||| |||| || ||||| |||||
Sbjct: 277 agcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtccccggcggtgaag 336
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|| ||||||||| |||||||||||| || || ||||||||| |||||||||| |||
Sbjct: 337 accaagttcatgttcatgaggaggcccaaggtggcctggtccgcaaacgtgtagggcccc 396
Query: 522 tgggcgcggcc 532
|| ||||||||
Sbjct: 397 tgcgcgcggcc 407
>gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G23f, mRNA sequence
Length = 645
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 245 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 186
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 185 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 126
Query: 690 t 690
|
Sbjct: 125 t 125
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Minus
Query: 402 agcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcgccggccgtgaac 461
||||||||||||||||| ||||| || ||||||| |||| ||| ||||| ||||||
Sbjct: 425 agcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcggtgaac 366
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|||||||||||| ||||||||| ||||| || |||||| |||||||||||||| |||
Sbjct: 365 acgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccc 306
Query: 522 tgggcgcggcccacctc 538
|| ||||||||||||||
Sbjct: 305 tgcgcgcggcccacctc 289
>gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E17f, mRNA sequence
Length = 890
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 248 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 189
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 188 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 129
Query: 690 t 690
|
Sbjct: 128 t 128
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Minus
Query: 402 agcacctcgttgcggccaaggatggagagcgtgctgccgttgtgctcgccggccgtgaac 461
||||||||||||||||| ||||| || ||||||| |||| ||| ||||| ||||||
Sbjct: 428 agcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcggtgaac 369
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|||||||||||| ||||||||| ||||| || |||||| |||||||||||||| |||
Sbjct: 368 acgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccc 309
Query: 522 tgggcgcggcccacctc 538
|| ||||||||||||||
Sbjct: 308 tgcgcgcggcccacctc 292
>gb|BU983569.1|BU983569 HA30C20r HA Hordeum vulgare subsp. vulgare cDNA clone HA30C20
5-PRIME, mRNA sequence
Length = 422
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 349 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 290
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 289 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 230
Query: 690 t 690
|
Sbjct: 229 t 229
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 509 cgtgtaggtgccctgggcgcggcccacctc 538
||||||||| ||||| ||||||||||||||
Sbjct: 422 cgtgtaggtcccctgcgcgcggcccacctc 393
>gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64H06
5-PRIME, mRNA sequence
Length = 369
Score = 107 bits (54), Expect = 5e-022
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| ||||||||||||||||||||| |||||| || |||||| ||| |||
Sbjct: 249 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 190
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtggaagtacacc 689
| |||||| || || | |||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 189 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 130
Query: 690 t 690
|
Sbjct: 129 t 129
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|||||||||||| ||||||||| ||||| || |||||| |||||||||||||| |||
Sbjct: 369 acgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccc 310
Query: 522 tgggcgcggcccacctc 538
|| ||||||||||||||
Sbjct: 309 tgcgcgcggcccacctc 293
>gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112g9 5' similar to hypothetical
protein T10K17.300 - Arabidopsis thaliana, mRNA sequence
Length = 360
Score = 95.6 bits (48), Expect = 2e-018
Identities = 207/260 (79%)
Strand = Plus / Minus
Query: 264 gccttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatg 323
|||||||||| |||||||||| ||||||||| |||||| ||||||||||||| |
Sbjct: 263 gccttgacgtatacggtgtactcgacgacggtctcgccggagttggcgccggagtccccg 204
Query: 324 gtgtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctc 383
||| |||||| | ||| ||||| ||||| |||| |||||| |||| |||| |||||||
Sbjct: 203 gtgctcgcctgaatgtagccgcgagccatccggaccttgcccgtgcccccgaggatgctc 144
Query: 384 atctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttg 443
||||| | || | |||||||||||||| || ||||| || ||||||| |||
Sbjct: 143 atctccctcaccgccgaaagcacctcgttgcgtccgtagatggtcaggctgctgcccttg 84
Query: 444 tgctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtcc 503
| ||| ||||| |||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 83 tactccccggcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcg 24
Query: 504 gcgaacgtgtaggtgccctg 523
|||||||||||||| |||||
Sbjct: 23 gcgaacgtgtaggtcccctg 4
>gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K06 5', mRNA sequence
Length = 462
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 240 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 181
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 180 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 131
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||
Sbjct: 360 acgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccc 301
Query: 522 tgggcgcggcc 532
|| ||||||||
Sbjct: 300 tgcgcgcggcc 290
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 357 aacttgccgctgccgccgacgatgctcatctc 388
||||||||| |||| |||||||||||||||||
Sbjct: 462 aacttgccggtgcccccgacgatgctcatctc 431
>gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA27E09
5-PRIME, mRNA sequence
Length = 532
Score = 93.7 bits (47), Expect = 7e-018
Identities = 143/175 (81%)
Strand = Plus / Minus
Query: 358 acttgccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggc 417
|||||||| |||| ||||||||||||||||| | || | ||||||||||||||||
Sbjct: 532 acttgccggtgcccccgacgatgctcatctccctcaccgccgacagcacctcgttgcggc 473
Query: 418 caaggatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgacca 477
| ||||| ||| |||||| |||| || ||||| ||||| |||||||||||| ||
Sbjct: 472 cgtagatggtgaggccgctgcccttgtagtccccggcggtgaagacgaagttcatgttca 413
Query: 478 tgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcc 532
||||||||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 412 tgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 358
Score = 93.7 bits (47), Expect = 7e-018
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
|||||||||||||||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 308 agcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 249
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 248 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 199
>gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55B18
5-PRIME, mRNA sequence
Length = 333
Score = 87.7 bits (44), Expect = 5e-016
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 570 agcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggaggacgcc 629
||||||||||| |||||||| |||||||||||| |||||| || |||||| |||||||
Sbjct: 213 agcgggtcgtcnatggccacgaccgcgccgaagaaggtggaggagctgttggtggacgcc 154
Query: 630 gnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
| |||||| || || | ||| |||||| |||||||||||| ||||||||
Sbjct: 153 gcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgtcgtg 104
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 462 acgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccc 521
|||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||
Sbjct: 333 acgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccc 274
Query: 522 tgggcgcggcc 532
|| ||||||||
Sbjct: 273 tgcgcgcggcc 263
>gb|BI779199.2|BI779199 EBro01_SQ003_E21_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_E21 5', mRNA sequence
Length = 190
Score = 69.9 bits (35), Expect = 1e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 456 gtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgcgaacgtgtag 515
|||| ||||||||||||| ||||||||| ||||| || |||||| ||||||||||||
Sbjct: 183 gtgaccacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 124
Query: 516 gtgccctgggcgcggcccacctc 538
|| ||||| ||||||||| ||||
Sbjct: 123 gtcccctgcgcgcggcccccctc 101
>gb|BM096809.2|BM096809 EBma07_SQ001_L15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_L15 5', mRNA sequence
Length = 239
Score = 63.9 bits (32), Expect = 7e-009
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 616 tgttggaggacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgt 675
|||||| ||| |||| |||||| || || | |||||||||| || ||||||| | |||||
Sbjct: 220 tgttggtggatgccgcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgt 161
Query: 676 cgtggaagtacacct 690
|||||||||||||||
Sbjct: 160 cgtggaagtacacct 146
>gb|BQ763515.1|BQ763515 EBro02_SQ008_J13_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J13 5', mRNA sequence
Length = 656
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 429 agcgtgctgccgttgtgctcgccggccgtgaacacgaagtt 469
|||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 438 agcgtgctcccggtgtgctccccggccgtgaacacgaagtt 398
>gb|BQ765646.1|BQ765646 EBro03_SQ007_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C23 5', mRNA sequence
Length = 504
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 429 agcgtgctgccgttgtgctcgccggccgtgaacacgaagtt 469
|||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 434 agcgtgctcccggtgtgctccccggccgtgaacacgaagtt 394
>gb|BQ768452.1|BQ768452 EBro08_SQ011_C19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_C19 5', mRNA sequence
Length = 468
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 429 agcgtgctgccgttgtgctcgccggccgtgaacacgaagtt 469
|||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 121 agcgtgctcccggtgtgctccccggccgtgaacacgaagtt 81
>gb|BM096868.2|BM096868 EBma07_SQ001_P07_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_P07 5', mRNA sequence
Length = 215
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 647 cgccgtcgggttcgtccccgccacgacgtcgtggaagtacacct 690
|||||||||| || ||||||| | ||||||||||||||||||||
Sbjct: 202 cgccgtcgggctcttccccgctaggacgtcgtggaagtacacct 159
>gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018A09f, mRNA sequence
Length = 611
Score = 52.0 bits (26), Expect = 3e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 367 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaaggatgg 426
|||||||||||| | |||||||||||||||| ||||| ||||||||| || | ||
Sbjct: 406 tgccgccgacgacgggcatctcgcggacgtcggtgagcgggcagttgcggccgagcacgg 347
Query: 427 agagcgtgctgccgttgt 444
|||||||||||||||||
Sbjct: 346 cgagcgtgctgccgttgt 329
>gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P20 5', mRNA sequence
Length = 504
Score = 52.0 bits (26), Expect = 3e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgat 379
||||||||||||||| |||||| |||| |||||||||||||
Sbjct: 340 gtacccgcgcgccatccggaacgcgccggtgccgccgacgat 299
>gb|BU982849.1|BU982849 HA27M16r HA Hordeum vulgare subsp. vulgare cDNA clone HA27M16
5-PRIME, mRNA sequence
Length = 199
Score = 50.1 bits (25), Expect = 1e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 616 tgttggaggacgccgnctgcgcgatgcgcaccgccgtcgggttcgtccccgccacgacgt 675
|||||| |||||||| |||||| || || | ||| |||||| |||||||||||| ||||
Sbjct: 195 tgttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgccagcacgt 136
Query: 676 cgtg 679
||||
Sbjct: 135 cgtg 132
>gb|BQ471570.1|BQ471570 HV02N06r HV Hordeum vulgare subsp. vulgare cDNA clone HV02N06
5-PRIME, mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 337 cgtacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||||||||| |||| |||||| |||| ||||||||||||||
Sbjct: 522 cgtacccgcgcaccatccggaacgcgccggtgccgccgacgatg 479
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 443 gtgctcgccggccgtgaacacga 465
|||||| ||||||||||||||||
Sbjct: 416 gtgctccccggccgtgaacacga 394
>gb|BQ664314.1|BQ664314 HV02N06u HV Hordeum vulgare subsp. vulgare cDNA clone HV02N06
3-PRIME, mRNA sequence
Length = 571
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 337 cgtacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||||||||| |||| |||||| |||| ||||||||||||||
Sbjct: 156 cgtacccgcgcaccatccggaacgcgccggtgccgccgacgatg 199
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 443 gtgctcgccggccgtgaacacga 465
|||||| ||||||||||||||||
Sbjct: 262 gtgctccccggccgtgaacacga 284
>gb|BI949982.1|BI949982 HVSMEl0017H22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017H22f, mRNA sequence
Length = 491
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 443 gtgctcgccggccgtgaacacga 465
|||||| ||||||||||||||||
Sbjct: 402 gtgctccccggccgtgaacacga 380
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,189
Number of Sequences: 312970
Number of extensions: 87189
Number of successful extensions: 26660
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26512
Number of HSP's gapped (non-prelim): 116
length of query: 707
length of database: 175,134,539
effective HSP length: 19
effective length of query: 688
effective length of database: 169,188,109
effective search space: 116401418992
effective search space used: 116401418992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)