BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.2
(860 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 68 5e-010
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 68 5e-010
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 68 5e-010
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 60 1e-007
gb|BQ753555.1|BQ753555 EBan01_SQ004_J12_R anther, yellow st... 60 1e-007
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 60 1e-007
gb|BQ460847.1|BQ460847 HA05L17r HA Hordeum vulgare subsp. v... 52 3e-005
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 50 1e-004
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 48 5e-004
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 48 5e-004
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 46 0.002
gb|BQ661207.1|BQ661207 HM02G20u HM Hordeum vulgare subsp. v... 44 0.008
gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow st... 42 0.030
gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow st... 42 0.030
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 42 0.030
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 40 0.12
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 40 0.12
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 40 0.12
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 40 0.12
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 40 0.12
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 40 0.12
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 40 0.12
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 38 0.46
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 38 0.46
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 38 0.46
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 38 0.46
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 38 0.46
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 38 0.46
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 38 0.46
>gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C16 5', mRNA sequence
Length = 389
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| |||||||||| | || |||||||||||| |||||| || |||||| | || |
Sbjct: 46 cttccacgtggagaagggctccagccccaactacctcgccctggtgatcaagttcctcca 105
Query: 296 cggcgatggcgacattgtggcggtggacatcaag 329
||||| |||||| | ||||| ||||||||||||
Sbjct: 106 gggcgacggcgacgtggtggccgtggacatcaag 139
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 431 caccaccgagggaggcactaagaccgtctatgacgatgtcatccccgccggctggaagcc 490
|||||||||||| ||||| ||||||||| || || |||||||||| |||||||||||
Sbjct: 241 caccaccgagggcggcaccaagaccgtcgccgaggacgtcatccccgaaggctggaagcc 300
Query: 491 caacac 496
| ||||
Sbjct: 301 cgacac 306
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| |||||||||| | || |||||||||||| |||||| || |||||| | || |
Sbjct: 239 cttccacgtggagaagggctccagccccaactacctcgccctggtgatcaagttcctcca 298
Query: 296 cggcgatggcgacattgtggcggtggacatcaag 329
||||| |||||| | ||||| ||||||||||||
Sbjct: 299 gggcgacggcgacgtggtggccgtggacatcaag 332
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 87 gagcccatcgcggcgtaccacttcgacct 115
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| |||||||||| | || |||||||||||| |||||| | ||||||| | || |
Sbjct: 532 cttccacgtggagaagggctccagccccaactacctcgccctggttgtcaagttcctcca 473
Query: 296 cggcgatggcgacattgtggcggtggacatcaag 329
||||| |||||| | ||||| ||||||||||||
Sbjct: 472 gggcgacggcgacgtggtggccgtggacatcaag 439
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 431 caccaccgagggaggcactaagaccgtctatgacgatgtcatccccgccggctggaagcc 490
|||||||||||| ||||| ||||||||| || || |||||||||| |||||||||||
Sbjct: 337 caccaccgagggcggcaccaagaccgtcgccgaggacgtcatccccgagggctggaagcc 278
Query: 491 caacac 496
| ||||
Sbjct: 277 cgacac 272
>gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D03 5', mRNA sequence
Length = 677
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| ||||||| || | || |||||||||||| |||||| || |||||| | || |
Sbjct: 535 cttccacgtggagaaaggctccagccccaactacctcgccctggtgatcaagttcctcca 594
Query: 296 cggcgatggcgacattgtggcggtggacatcaag 329
||||| |||||| | ||||| ||||||||||||
Sbjct: 595 gggcgacggcgacgtggtggccgtggacatcaag 628
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 383 gagcccatcgcggcgtaccacttcgacct 411
>gb|BQ753555.1|BQ753555 EBan01_SQ004_J12_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_J12 5', mRNA sequence
Length = 286
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| ||||||| || | || |||||||||||| |||||| | ||||||| | || |
Sbjct: 66 cttccacgtggagaaaggctccagccccaactacctcgccctggttgtcaagttcctcca 125
Query: 296 cggcgatggcgacattgtggcggtggacatcaag 329
||||| |||||| | ||||| ||||||||||||
Sbjct: 126 gggcgacggcgacgtggtggccgtggacatcaag 159
>gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
5-PRIME, mRNA sequence
Length = 628
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 244 tggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcgacggcgatg 303
|||||||||| | || |||||||||||| |||||| | ||||||| | || | ||||| |
Sbjct: 540 tggagaagggctccagccccaactacctcgccctggttgtcaagttcctccagggcgacg 599
Query: 304 gcgacattgtggcggtggacatcaag 329
||||| | ||||| ||||||||||||
Sbjct: 600 gcgacgtggtggccgtggacatcaag 625
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 379 gagcccatcgcggcgtaccacttcgacct 407
>gb|BQ460847.1|BQ460847 HA05L17r HA Hordeum vulgare subsp. vulgare cDNA clone HA05L17
5-PRIME, mRNA sequence
Length = 501
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 431 caccaccgagggaggcactaagaccgtctatgacgatgtcatccccgccggctggaagcc 490
|||||||||||| ||||| ||||||||| || || |||||||||| |||||||||||
Sbjct: 48 caccaccgagggcggcaccaagaccgtcgccgaggacgtcatccccgagggctggaagcc 107
Query: 491 caacac 496
| ||||
Sbjct: 108 cgacac 113
>gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001I02f, mRNA sequence
Length = 606
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagt 288
||||||| |||||||||| | || |||||||||||| |||||| | |||||||
Sbjct: 510 cttccacgtggagaagggctccagccccaactacctcgccctggttgtcaagt 562
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 358 gagcccatcgcggcgtaccacttcgacct 386
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagccc 491
||||||||||||||||||||||||
Sbjct: 146 gtcatccccgccggctggaagccc 169
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagccc 491
||||||||||||||||||||||||
Sbjct: 441 gtcatccccgccggctggaagccc 464
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcc 490
|||||||||||||||||||||||
Sbjct: 427 gtcatccccgccggctggaagcc 449
>gb|BQ661207.1|BQ661207 HM02G20u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G20
3-PRIME, mRNA sequence
Length = 564
Score = 44.1 bits (22), Expect = 0.008
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 431 caccaccgagggaggcactaagaccgtctatgacgatgtcatccccgccggctggaagcc 490
|||||||||||| ||||| ||||||||| || || ||||||||| |||||||||||
Sbjct: 486 caccaccgagggcggcaccaagaccgtcgccgaggacgtcatccccaagggctggaagcc 427
Query: 491 caacac 496
| ||||
Sbjct: 426 cgacac 421
>gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M07 5', mRNA sequence
Length = 448
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 389 gagcccatcgcggcgtaccacttcgacct 417
>gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_P04 5', mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 383 gagcccatcgcggcgtaccacttcgacct 411
>gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G21 5', mRNA sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gagcccattgcggcataccacttcgacct 118
|||||||| ||||| ||||||||||||||
Sbjct: 323 gagcccatcgcggcgtaccacttcgacct 351
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 105 taccacttcgacctagcgggcacggcgttcgg 136
|||||||||||||| | ||||||||||||||
Sbjct: 469 taccacttcgacctgaccggcacggcgttcgg 500
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagccc 491
||||||||||||||||| ||||||
Sbjct: 400 gtcatccccgccggctgaaagccc 423
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacctagcgggcacggcgttcggt 137
|||| ||||||||||||||| ||| | |||||| | ||||| | |||| ||| |||||
Sbjct: 395 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 454
Query: 138 gccatggc 145
||||||||
Sbjct: 455 gccatggc 462
Score = 38.2 bits (19), Expect = 0.46
Identities = 67/83 (80%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||| || | ||||| |||||||||||| | | ||||||
Sbjct: 551 aaggtcaccttccacgtagagaccggctcgaacccaaactacctggccatactcgtcaag 610
Query: 288 tacgtcgacggcgatggcgacat 310
| ||||| || ||| ||||||||
Sbjct: 611 ttcgtcgccgacgacggcgacat 633
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacctagcgggcacggcgttcggt 137
|||| ||||||||||||||| ||| | |||||| | ||||| | |||| ||| |||||
Sbjct: 405 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 464
Query: 138 gccatggc 145
||||||||
Sbjct: 465 gccatggc 472
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacctagcgggcacggcgttcggt 137
|||| ||||||||||||||| ||| | |||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 138 gccatggc 145
||||||||
Sbjct: 434 gccatggc 441
Score = 38.2 bits (19), Expect = 0.46
Identities = 67/83 (80%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||| || | ||||| |||||||||||| | | ||||||
Sbjct: 530 aaggtcaccttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaag 589
Query: 288 tacgtcgacggcgatggcgacat 310
| ||||| || ||| ||||||||
Sbjct: 590 ttcgtcgccgacgacggcgacat 612
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacctagcgggcacggcgttcggt 137
|||| ||||||||||||||| ||| | |||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 138 gccatggc 145
||||||||
Sbjct: 434 gccatggc 441
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacctagcgggcacggcgttcggt 137
|||| ||||||||||||||| ||| | |||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 138 gccatggc 145
||||||||
Sbjct: 434 gccatggc 441
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.46
Identities = 57/67 (85%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 71 cattacggacatgaactacgagcccattgcggcataccacttcgacct-agcgggcacgg 129
|||||| |||||||||||| | || | ||| | |||||||||||||| ||| |||||||
Sbjct: 433 cattaccgacatgaactactacccggtggcgccctaccacttcgacctcagc-ggcacgg 491
Query: 130 cgttcgg 136
|||||||
Sbjct: 492 cgttcgg 498
>gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D14
5-PRIME, mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaac 494
||||||||||||| |||| ||||||||
Sbjct: 308 gtcatccccgccgactgggagcccaac 334
>gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
3-PRIME, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.46
Identities = 67/83 (80%)
Strand = Plus / Minus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||| || | ||||| |||||||||||| | | ||||||
Sbjct: 500 aaggtcaccttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaag 441
Query: 288 tacgtcgacggcgatggcgacat 310
| ||||| || ||| ||||||||
Sbjct: 440 ttcgtcgccgacgacggcgacat 418
Score = 38.2 bits (19), Expect = 0.46
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 369 tggggcgccatctggaggaaggacagcgacaagccgatcaagg 411
|||||||||||||||||| |||| ||| ||| |||||||||
Sbjct: 356 tggggcgccatctggaggtgggacggcgccaatgcgatcaagg 314
>gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. vulgare cDNA clone HX04D14
3-PRIME, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 468 gtcatccccgccggctggaagcccaac 494
||||||||||||| |||| ||||||||
Sbjct: 299 gtcatccccgccgactgggagcccaac 273
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 252 gggtgcaaccccaactacctggc 274
|||| ||||||||||||||||||
Sbjct: 273 gggtccaaccccaactacctggc 295
>gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
3-PRIME, mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.46
Identities = 67/83 (80%)
Strand = Plus / Minus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||| || | ||||| |||||||||||| | | ||||||
Sbjct: 511 aaggtcaccttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaag 452
Query: 288 tacgtcgacggcgatggcgacat 310
| ||||| || ||| ||||||||
Sbjct: 451 ttcgtcgccgacgacggcgacat 429
Score = 38.2 bits (19), Expect = 0.46
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 369 tggggcgccatctggaggaaggacagcgacaagccgatcaagg 411
|||||||||||||||||| |||| ||| ||| |||||||||
Sbjct: 367 tggggcgccatctggaggtgggacggcgccaatgcgatcaagg 325
>gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G06
3-PRIME, mRNA sequence
Length = 588
Score = 38.2 bits (19), Expect = 0.46
Identities = 67/83 (80%)
Strand = Plus / Minus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||| || | ||||| |||||||||||| | | ||||||
Sbjct: 501 aaggtcaccttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaag 442
Query: 288 tacgtcgacggcgatggcgacat 310
| ||||| || ||| ||||||||
Sbjct: 441 ttcgtcgccgacgacggcgacat 419
Score = 38.2 bits (19), Expect = 0.46
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 369 tggggcgccatctggaggaaggacagcgacaagccgatcaagg 411
|||||||||||||||||| |||| ||| ||| |||||||||
Sbjct: 357 tggggcgccatctggaggtgggacggcgccaatgcgatcaagg 315
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,241
Number of Sequences: 312970
Number of extensions: 84241
Number of successful extensions: 24678
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24588
Number of HSP's gapped (non-prelim): 80
length of query: 860
length of database: 175,134,539
effective HSP length: 19
effective length of query: 841
effective length of database: 169,188,109
effective search space: 142287199669
effective search space used: 142287199669
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)