BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 70 2e-010
gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow st... 64 9e-009
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 64 9e-009
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 56 2e-006
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 56 2e-006
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 54 9e-006
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 50 1e-004
gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow st... 50 1e-004
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 48 6e-004
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 48 6e-004
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 48 6e-004
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 48 6e-004
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 48 6e-004
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 48 6e-004
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 48 6e-004
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ753440.1|BQ753440 EBan01_SQ004_E11_R anther, yellow st... 46 0.002
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 46 0.002
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 46 0.002
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 46 0.002
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 46 0.002
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 46 0.002
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 46 0.002
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 46 0.002
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 46 0.002
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 46 0.002
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 46 0.002
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 46 0.002
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 46 0.002
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 46 0.002
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 44 0.009
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 44 0.009
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 44 0.009
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 44 0.009
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 44 0.009
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 44 0.009
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 44 0.009
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 44 0.009
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 44 0.009
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 44 0.009
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 44 0.009
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 44 0.009
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 44 0.009
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 44 0.009
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 44 0.009
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 44 0.009
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 44 0.009
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 44 0.009
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 44 0.009
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 44 0.009
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 44 0.009
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 44 0.009
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 42 0.035
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 42 0.035
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 40 0.14
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 40 0.14
>gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
5-PRIME, mRNA sequence
Length = 628
Score = 69.9 bits (35), Expect = 2e-010
Identities = 248/319 (77%)
Strand = Plus / Plus
Query: 185 agatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaatggtgg 244
|||||||||| | || ||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 144 agatgccaagacgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcgg 203
Query: 245 cggatgtgggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaa 304
|| || ||||||||||| ||| |||||||||| ||| | ||||| | | || |||||
Sbjct: 204 cgcctgcgggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaa 263
Query: 305 cgtccctatcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaa 364
|||||| ||||||||||| || | || || || |||||||||||| |||||||| |||
Sbjct: 264 cgtccccatcttcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaa 323
Query: 365 gccagcggagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcc 424
||| | || ||||| ||| ||||| | || ||| || |||| |||| | |||||
Sbjct: 324 gcccgaggcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcc 383
Query: 425 cattgcggcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaagaaggg 484
||| |||||||||||||||||||| | ||| || ||||| ||||||||||||||||
Sbjct: 384 catcgcggcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaaggg 443
Query: 485 tgaggaggagaagttgcgc 503
||||| ||||| |||||
Sbjct: 444 ccaggagcagaagctgcgc 462
Score = 42.1 bits (21), Expect = 0.035
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 574 tggagaagggatgcaaccccaactacctggccctgttggtcaagt 618
|||||||||| | || |||||||||||| |||||| | |||||||
Sbjct: 540 tggagaagggctccagccccaactacctcgccctggttgtcaagt 584
>gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_P04 5', mRNA sequence
Length = 470
Score = 63.9 bits (32), Expect = 9e-009
Identities = 197/252 (78%)
Strand = Plus / Plus
Query: 252 gggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccct 311
||||||||||| ||| |||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 215 gggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtcccc 274
Query: 312 atcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaagccagcg 371
||||||||||| || | || || || |||||||||||| |||||||| |||||| | |
Sbjct: 275 atcttcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgag 334
Query: 372 gagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcccattgcg 431
| ||||| ||| ||||| | || ||| || |||| |||| | |||||||| |||
Sbjct: 335 gcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcg 394
Query: 432 gcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaagaagggtgaggag 491
||||||||||||||||| | ||| || ||||| |||||||||||||||| |||||
Sbjct: 395 gcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggag 454
Query: 492 gagaagttgcgc 503
||||| |||||
Sbjct: 455 cagaagctgcgc 466
>gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G21 5', mRNA sequence
Length = 538
Score = 63.9 bits (32), Expect = 9e-009
Identities = 197/252 (78%)
Strand = Plus / Plus
Query: 252 gggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccct 311
||||||||||| ||| |||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 155 gggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtcccc 214
Query: 312 atcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaagccagcg 371
||||||||||| || | || || || |||||||||||| |||||||| |||||| | |
Sbjct: 215 atcttcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgag 274
Query: 372 gagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcccattgcg 431
| ||||| ||| ||||| | || ||| || |||| |||| | |||||||| |||
Sbjct: 275 gcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcg 334
Query: 432 gcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaagaagggtgaggag 491
||||||||||||||||| | ||| || ||||| |||||||||||||||| |||||
Sbjct: 335 gcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggag 394
Query: 492 gagaagttgcgc 503
||||| |||||
Sbjct: 395 cagaagctgcgc 406
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 56.0 bits (28), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 420 gagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
|||||||| |||||||||||||||||||| | ||| || ||||| |||||||||||
Sbjct: 87 gagcccatcgcggcgtaccacttcgacctgtccggccatgccttcggcaccatggccaag 146
Query: 480 aagggtgaggaggagaagttgcgc 503
||||| ||||| ||||| |||||
Sbjct: 147 aagggccaggagcagaagctgcgc 170
Score = 42.1 bits (21), Expect = 0.035
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 574 tggagaagggatgcaaccccaactacctggccctgttggtcaagt 618
|||||||||| | || |||||||||||| |||||| || ||||||
Sbjct: 247 tggagaagggctccagccccaactacctcgccctggtgatcaagt 291
>gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D03 5', mRNA sequence
Length = 677
Score = 56.0 bits (28), Expect = 2e-006
Identities = 196/252 (77%)
Strand = Plus / Plus
Query: 252 gggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccct 311
||||||||||| ||| |||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 215 gggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtcccc 274
Query: 312 atcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaagccagcg 371
||||||||||| | | || || || |||||||||||| |||||||| |||||| | |
Sbjct: 275 atcttcaaggacagccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccggg 334
Query: 372 gagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcccattgcg 431
| ||||| ||| ||||| | || ||| || |||| |||| | |||||||| |||
Sbjct: 335 gcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcg 394
Query: 432 gcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaagaagggtgaggag 491
||||||||||||||||| | ||| || ||||| |||||||||||||||| |||||
Sbjct: 395 gcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggag 454
Query: 492 gagaagttgcgc 503
||||| |||||
Sbjct: 455 cagaagctgcgc 466
>gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G22f, mRNA sequence
Length = 488
Score = 54.0 bits (27), Expect = 9e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| |||||||||||
Sbjct: 80 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccggacgacaa 138
>gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001I02f, mRNA sequence
Length = 606
Score = 50.1 bits (25), Expect = 1e-004
Identities = 154/197 (78%)
Strand = Plus / Plus
Query: 252 gggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccct 311
||||||||||| ||| |||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 190 gggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtcccc 249
Query: 312 atcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaagccagcg 371
|||||||| || || | || || || |||||||||||| |||||||| |||||| | |
Sbjct: 250 atcttcaaagacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgag 309
Query: 372 gagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcccattgcg 431
| ||||| ||| ||||| | || ||| || |||| |||| | |||||||| |||
Sbjct: 310 gcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcg 369
Query: 432 gcgtaccacttcgacct 448
|||||||||||||||||
Sbjct: 370 gcgtaccacttcgacct 386
Score = 42.1 bits (21), Expect = 0.035
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 574 tggagaagggatgcaaccccaactacctggccctgttggtcaagt 618
|||||||||| | || |||||||||||| |||||| | |||||||
Sbjct: 518 tggagaagggctccagccccaactacctcgccctggttgtcaagt 562
>gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M07 5', mRNA sequence
Length = 448
Score = 50.1 bits (25), Expect = 1e-004
Identities = 154/197 (78%)
Strand = Plus / Plus
Query: 252 gggtacaaggacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccct 311
||||||||||| ||| |||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 221 gggtacaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtcccc 280
Query: 312 atcttcaaggatggtctaggttgtggatcctgcttcgagatcaagtgcgacaagccagcg 371
||||||||||| | | || || || |||||||||||| |||||||| |||||| | |
Sbjct: 281 atcttcaaggacagccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgag 340
Query: 372 gagtgctctggcaagcccgtggtggtgtacattacagacatgaactacgagcccattgcg 431
| ||||| ||| ||||| | || ||| || |||| |||| | |||||||| |||
Sbjct: 341 gcctgctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcg 400
Query: 432 gcgtaccacttcgacct 448
|||||||||||||||||
Sbjct: 401 gcgtaccacttcgacct 417
>gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005K24f, mRNA sequence
Length = 812
Score = 48.1 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 222 gccggcccggacgacaatggtggcggatgtgggtacaaggacgtgaac 269
||||| || |||||||||||||||| ||| |||| |||| ||||||||
Sbjct: 77 gccgggcctgacgacaatggtggcgcatgcgggttcaagaacgtgaac 124
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggt 467
|||| ||||||||||||||| ||| |||||||| | ||||| | |||| ||| |||||
Sbjct: 395 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 454
Query: 468 gccatggc 475
||||||||
Sbjct: 455 gccatggc 462
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggt 467
|||| ||||||||||||||| ||| |||||||| | ||||| | |||| ||| |||||
Sbjct: 405 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 464
Query: 468 gccatggc 475
||||||||
Sbjct: 465 gccatggc 472
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 6e-004
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 424 ccattgcggcgtaccacttcgacctagcaggcacggcgttcggtgccatggccaagaagg 483
|||| |||||||||||||||||||| | ||| || ||||| |||||||||||||||
Sbjct: 680 ccatcgcggcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaagg 621
Query: 484 gtgaggaggagaagttgcgc 503
| ||||| ||||| |||||
Sbjct: 620 gccaggagcagaagctgcgc 601
Score = 42.1 bits (21), Expect = 0.035
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 574 tggagaagggatgcaaccccaactacctggccctgttggtcaagt 618
|||||||||| | || |||||||||||| |||||| | |||||||
Sbjct: 524 tggagaagggctccagccccaactacctcgccctggttgtcaagt 480
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggt 467
|||| ||||||||||||||| ||| |||||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 468 gccatggc 475
||||||||
Sbjct: 434 gccatggc 441
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggt 467
|||| ||||||||||||||| ||| |||||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 468 gccatggc 475
||||||||
Sbjct: 434 gccatggc 441
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacctagcaggcacggcgttcggt 467
|||| ||||||||||||||| ||| |||||||| | ||||| | |||| ||| |||||
Sbjct: 374 gacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggccttcggc 433
Query: 468 gccatggc 475
||||||||
Sbjct: 434 gccatggc 441
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 11 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 69
>gb|BQ753440.1|BQ753440 EBan01_SQ004_E11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_E11 5', mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.002
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||| ||||| ||||| || | ||||| || |||| || |||||||||
Sbjct: 164 tggtacggcaagccgacaggcgccgggcccaaagacaacggcggcgcctgcgggtacaag 223
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaa 319
|| ||| |||||||||| ||| | ||||| | | || ||||||||||| ||||||||
Sbjct: 224 gaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatcttcaa 282
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 73 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 131
>gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. vulgare cDNA clone HA22N23
5-PRIME, mRNA sequence
Length = 465
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 112 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 170
>gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. vulgare cDNA clone HA24I17
5-PRIME, mRNA sequence
Length = 495
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 118 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 120 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
>gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL106e9 5' similar to Triticum
aestivum expansin EXPB7 mRNA, complete cds, mRNA
sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 126 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 184
>gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10B12 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 120 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 120 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
>gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL63c5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 62 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 120
>gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL66d10 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 539
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 118 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
>gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL66d9 5' similar to Triticum
aestivum expansin EXPB7 mRNA, complete cds, mRNA
sequence
Length = 551
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 120 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 126 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 184
>gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL8E2 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 118 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 180 tggctagatgccaaggcaacatggtatggcaagccaacaggtgccggcccggacgacaa 238
||||| || |||||||| ||||||||||||| || || |||||||| || ||||||||
Sbjct: 118 tggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 405 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 450
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 321 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 366
>gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007P24f, mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 447 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 492
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 396 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 441
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 434 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 479
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 338 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 383
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 448 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 493
>gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H04f, mRNA sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 446 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 491
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 442 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 487
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 443 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 488
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 437 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 482
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 425 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 470
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 448 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 493
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 360 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 405
>gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0101P24f, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 446 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 491
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 446 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 491
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 434 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 479
>gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G16 5', mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 428 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 473
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 1 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 46
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 44.1 bits (22), Expect = 0.009
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacctagcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 459 gtaccacttcgacctgagtggcaccgcgttcggcgccatggccaag 504
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,404
Number of Sequences: 312970
Number of extensions: 105404
Number of successful extensions: 29075
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 28844
Number of HSP's gapped (non-prelim): 207
length of query: 1003
length of database: 175,134,539
effective HSP length: 19
effective length of query: 984
effective length of database: 169,188,109
effective search space: 166481099256
effective search space used: 166481099256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)