BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276111.2.1
(1393 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE455678.3|BE455678 HVSMEg0018N22f Hordeum vulgare pre-a... 133 2e-029
gb|BQ469352.1|BQ469352 HM04E11r HM Hordeum vulgare subsp. v... 133 2e-029
gb|BM442118.2|BM442118 EBan01_SQ002_E07_R anther, yellow st... 133 2e-029
gb|BM442282.2|BM442282 EBan01_SQ002_M05_R anther, yellow st... 133 2e-029
gb|BM442197.2|BM442197 EBan01_SQ002_I02_R anther, yellow st... 119 3e-025
gb|BM442325.2|BM442325 EBan01_SQ002_O01_R anther, yellow st... 115 4e-024
gb|BU994426.1|BU994426 HM07A13r HM Hordeum vulgare subsp. v... 113 2e-023
emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cystein... 90 2e-016
emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cystein... 90 2e-016
gb|BQ471140.1|BQ471140 HV01B20T HV Hordeum vulgare subsp. v... 76 3e-012
gb|BQ471157.1|BQ471157 HV01F03T HV Hordeum vulgare subsp. v... 76 3e-012
gb|BM442217.2|BM442217 EBan01_SQ002_I24_R anther, yellow st... 76 3e-012
gb|CB884207.1|CB884207 HV11M07r HV Hordeum vulgare subsp. v... 76 3e-012
emb|A98645.1| Sequence 1 from Patent WO9910500 60 2e-007
gb|AL505180.1|AL505180 AL505180 Hordeum vulgare Barke roots... 58 8e-007
emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cystein... 56 3e-006
gb|AL450540.1|AL450540 AL450540 Hordeum vulgare Barke etiol... 54 1e-005
gb|AL450820.1|AL450820 AL450820 Hordeum vulgare Barke etiol... 54 1e-005
gb|AL450852.1|AL450852 AL450852 Hordeum vulgare Barke etiol... 54 1e-005
gb|AL500436.1|AL500436 AL500436 Hordeum vulgare Barke etiol... 54 1e-005
gb|BF621715.2|BF621715 HVSMEa0011P20f Hordeum vulgare seedl... 54 1e-005
gb|BF628094.1|BF628094 HVSMEb0003B22f Hordeum vulgare seedl... 54 1e-005
gb|BF628191.2|BF628191 HVSMEb0003G02f Hordeum vulgare seedl... 54 1e-005
gb|BF628998.2|BF628998 HVSMEb0009I02f Hordeum vulgare seedl... 54 1e-005
gb|BG300443.1|BG300443 HVSMEb0017B09f Hordeum vulgare seedl... 54 1e-005
gb|BG300664.1|BG300664 HVSMEb0017O03f Hordeum vulgare seedl... 54 1e-005
gb|BF616064.2|BF616064 HVSMEc0001H07f Hordeum vulgare seedl... 54 1e-005
gb|BF618541.2|BF618541 HVSMEc0005P20f Hordeum vulgare seedl... 54 1e-005
gb|BF618995.2|BF618995 HVSMEc0008F14f Hordeum vulgare seedl... 54 1e-005
gb|BF616669.2|BF616669 HVSMEc0012B09f Hordeum vulgare seedl... 54 1e-005
gb|BI952787.1|BI952787 HVSMEm0007M17f Hordeum vulgare green... 54 1e-005
gb|BI955647.1|BI955647 HVSMEm0023O10f Hordeum vulgare green... 54 1e-005
gb|BF620030.3|BF620030 HVSMEc0011D13f Hordeum vulgare seedl... 54 1e-005
gb|AV917445.1|AV917445 AV917445 K. Sato unpublished cDNA li... 54 1e-005
gb|AV923103.1|AV923103 AV923103 K. Sato unpublished cDNA li... 54 1e-005
gb|AV923200.1|AV923200 AV923200 K. Sato unpublished cDNA li... 54 1e-005
gb|AV924415.1|AV924415 AV924415 K. Sato unpublished cDNA li... 54 1e-005
gb|AV924771.1|AV924771 AV924771 K. Sato unpublished cDNA li... 54 1e-005
gb|AV924784.1|AV924784 AV924784 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925173.1|AV925173 AV925173 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925239.1|AV925239 AV925239 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925573.1|AV925573 AV925573 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925578.1|AV925578 AV925578 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925582.1|AV925582 AV925582 K. Sato unpublished cDNA li... 54 1e-005
gb|AV925595.1|AV925595 AV925595 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926595.1|AV926595 AV926595 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926718.1|AV926718 AV926718 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926725.1|AV926725 AV926725 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926735.1|AV926735 AV926735 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926964.1|AV926964 AV926964 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926982.1|AV926982 AV926982 K. Sato unpublished cDNA li... 54 1e-005
gb|AV927005.1|AV927005 AV927005 K. Sato unpublished cDNA li... 54 1e-005
gb|AV927028.1|AV927028 AV927028 K. Sato unpublished cDNA li... 54 1e-005
gb|CB876765.1|CB876765 HP02F10T HP Hordeum vulgare subsp. v... 54 1e-005
emb|AJ222778.1|HVJ222778 Hordeum vulgare mRNA for putative ... 54 1e-005
gb|BF628689.3|BF628689 HVSMEb0007C07f Hordeum vulgare seedl... 52 5e-005
gb|BG343507.1|BG343507 HVSMEg0005P07f Hordeum vulgare pre-a... 50 2e-004
gb|BI959700.1|BI959700 HVSMEn0020N17f Hordeum vulgare rachi... 50 2e-004
gb|BI960036.1|BI960036 HVSMEn0022P09f Hordeum vulgare rachi... 50 2e-004
gb|BJ464204.1|BJ464204 BJ464204 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ756647.1|BQ756647 EBem09_SQ003_F14_R embryo, 1 Day ger... 50 2e-004
gb|BQ768040.1|BQ768040 EBro08_SQ010_D17_R root, 3 week, dro... 50 2e-004
gb|BG300667.1|BG300667 HVSMEb0017O09f Hordeum vulgare seedl... 48 8e-004
gb|AV915782.1|AV915782 AV915782 K. Sato unpublished cDNA li... 48 8e-004
gb|BQ471297.1|BQ471297 HV02B01r HV Hordeum vulgare subsp. v... 48 8e-004
gb|BQ472128.1|BQ472128 HV04H20r HV Hordeum vulgare subsp. v... 48 8e-004
gb|BQ762725.1|BQ762725 EBro02_SQ004_J24 _R root, 3 week, hy... 48 8e-004
gb|CA013849.1|CA013849 HT09K13r HT Hordeum vulgare subsp. v... 48 8e-004
gb|CA018792.1|CA018792 HV09K16r HV Hordeum vulgare subsp. v... 48 8e-004
gb|CB882748.1|CB882748 HL02L21w HL Hordeum vulgare subsp. v... 48 8e-004
gb|U19359.1|HVU19359 Hordeum vulgare cysteine proteinase EP... 48 8e-004
gb|U19384.1|HVU19384 Hordeum vulgare cysteine proteinase EP... 48 8e-004
gb|BE420772.1|BE420772 HWM002.D05 ITEC HWM Barley Leaf Libr... 46 0.003
gb|BE421206.1|BE421206 HWM006.H07 ITEC HWM Barley Leaf Libr... 46 0.003
gb|BE421277.1|BE421277 HWM007.F06 ITEC HWM Barley Leaf Libr... 46 0.003
gb|BE421935.1|BE421935 HWM016cG.04r ITEC HWM Barley Leaf Li... 46 0.003
gb|BE422355.1|BE422355 HWM023cE.07r ITEC HWM Barley Leaf Li... 46 0.003
gb|AL499932.1|AL499932 AL499932 Hordeum vulgare Barke etiol... 46 0.003
gb|BG310420.1|BG310420 HVSMEc0018J22f Hordeum vulgare seedl... 46 0.003
gb|BI950636.1|BI950636 HVSMEl0021N14f Hordeum vulgare spike... 46 0.003
gb|BE196180.3|BE196180 HVSMEh0091J08f Hordeum vulgare 5-45 ... 46 0.003
gb|BE196222.3|BE196222 HVSMEh0091L06f Hordeum vulgare 5-45 ... 46 0.003
gb|BQ467306.1|BQ467306 HS03F13r HS Hordeum vulgare subsp. v... 46 0.003
gb|BQ763183.1|BQ763183 EBro02_SQ007_A15_R root, 3 week, hyd... 46 0.003
gb|CB876932.1|CB876932 HP02O19T HP Hordeum vulgare subsp. v... 46 0.003
gb|CB878231.1|CB878231 HP07M15T HP Hordeum vulgare subsp. v... 46 0.003
gb|CB879458.1|CB879458 HP02F10w HP Hordeum vulgare subsp. v... 46 0.003
gb|CB879599.1|CB879599 HP02O19w HP Hordeum vulgare subsp. v... 46 0.003
gb|BF619936.2|BF619936 HVSMEc0009L21f Hordeum vulgare seedl... 44 0.012
gb|BQ464939.1|BQ464939 HU02D03r HU Hordeum vulgare subsp. v... 44 0.012
gb|BQ468597.1|BQ468597 HM01L12T HM Hordeum vulgare subsp. v... 44 0.012
gb|BQ767647.1|BQ767647 EBro08_SQ009_P12_R root, 3 week, dro... 44 0.012
gb|BU970579.1|BU970579 HB15B05r BC Hordeum vulgare subsp. v... 44 0.012
gb|BU979600.1|BU979600 HA16K22r HA Hordeum vulgare subsp. v... 44 0.012
gb|BU995458.1|BU995458 HM10F02r HM Hordeum vulgare subsp. v... 44 0.012
gb|CA001622.1|CA001622 HS05B16r HS Hordeum vulgare subsp. v... 44 0.012
gb|CA018842.1|CA018842 HV09N03r HV Hordeum vulgare subsp. v... 44 0.012
gb|CA027103.1|CA027103 HZ57O09r HZ Hordeum vulgare subsp. v... 44 0.012
gb|CA031300.1|CA031300 HX09I24r HX Hordeum vulgare subsp. v... 44 0.012
gb|CB876878.1|CB876878 HP02L18T HP Hordeum vulgare subsp. v... 44 0.012
gb|CB881603.1|CB881603 HM10F02w HM Hordeum vulgare subsp. v... 44 0.012
gb|CK122888.1|CK122888 BES1824101b11 BES1824 Hordeum vulgar... 44 0.012
gb|AL499690.1|AL499690 AL499690 Hordeum vulgare Barke etiol... 42 0.049
gb|AL499864.1|AL499864 AL499864 Hordeum vulgare Barke etiol... 42 0.049
gb|AL500018.1|AL500018 AL500018 Hordeum vulgare Barke etiol... 42 0.049
gb|AL500385.1|AL500385 AL500385 Hordeum vulgare Barke etiol... 42 0.049
gb|BE216298.2|BE216298 HV_CEb0010C01f Hordeum vulgare seedl... 42 0.049
gb|BF256849.3|BF256849 HVSMEf0011C24f Hordeum vulgare seedl... 42 0.049
gb|BE216527.3|BE216527 HV_CEb0010L18f Hordeum vulgare seedl... 42 0.049
gb|BE558716.3|BE558716 HV_CEb0020C14f Hordeum vulgare seedl... 42 0.049
gb|AV922852.1|AV922852 AV922852 K. Sato unpublished cDNA li... 42 0.049
gb|AV926966.1|AV926966 AV926966 K. Sato unpublished cDNA li... 42 0.049
gb|AV927476.1|AV927476 AV927476 K. Sato unpublished cDNA li... 42 0.049
gb|AV927572.1|AV927572 AV927572 K. Sato unpublished cDNA li... 42 0.049
gb|AV927641.1|AV927641 AV927641 K. Sato unpublished cDNA li... 42 0.049
gb|AV929742.1|AV929742 AV929742 K. Sato unpublished cDNA li... 42 0.049
gb|AV930489.1|AV930489 AV930489 K. Sato unpublished cDNA li... 42 0.049
gb|AV930959.1|AV930959 AV930959 K. Sato unpublished cDNA li... 42 0.049
gb|AV930960.1|AV930960 AV930960 K. Sato unpublished cDNA li... 42 0.049
gb|AV930969.1|AV930969 AV930969 K. Sato unpublished cDNA li... 42 0.049
gb|AV931202.1|AV931202 AV931202 K. Sato unpublished cDNA li... 42 0.049
gb|AV931203.1|AV931203 AV931203 K. Sato unpublished cDNA li... 42 0.049
gb|AV931213.1|AV931213 AV931213 K. Sato unpublished cDNA li... 42 0.049
gb|BM097386.2|BM097386 EBro01_SQ004_P20_R root, 3 week, hyd... 42 0.049
gb|BQ766500.1|BQ766500 EBro08_SQ006_C11 _R root, 3 week, dr... 42 0.049
gb|BQ768057.1|BQ768057 EBro08_SQ010_G17_R root, 3 week, dro... 42 0.049
gb|CA017567.1|CA017567 HV05J07r HV Hordeum vulgare subsp. v... 42 0.049
gb|AV836677.1|AV836677 AV836677 K. Sato unpublished cDNA li... 40 0.19
gb|BG300089.1|BG300089 HVSMEb0011G24f Hordeum vulgare seedl... 40 0.19
>gb|BE455678.3|BE455678 HVSMEg0018N22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018N22f, mRNA sequence
Length = 582
Score = 133 bits (67), Expect = 2e-029
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 136 gacaggctgatgatggaccggttcctcagctggcaggcgacgtacaaccggtcgtacccg 195
|||| ||||||||||||| |||||| | |||||||| ||| ||||||||||||||| |
Sbjct: 105 gacatgctgatgatggacaggttccgccagtggcaggccacgcacaaccggtcgtacctg 164
Query: 196 acggcggaggagaggcagcgccggttccaggtgtaccgccgcaacattgagcacatcgag 255
| ||||||||||||| ||| || |||||||||||| || |||| | ||| |||||||
Sbjct: 165 agcgcggaggagaggctgcggcgcttccaggtgtacagcgacaacgtggagtacatcgac 224
Query: 256 gccaccaaccgggcgggcaacctgacgtacacgctcggcgagaaccagttcgccgacctc 315
|||||||||||| ||| |||| || ||| |||||||||||| ||||||||||||||
Sbjct: 225 gccaccaaccggcgcggcgacctcacctacgagctcggcgagaatgagttcgccgacctc 284
Query: 316 acggaggaggagttcctgg 334
|| |||||||||||||||
Sbjct: 285 acccaggaggagttcctgg 303
Score = 85.7 bits (43), Expect = 4e-015
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 436 gactggaggtccaagggcgccgtcacgccgatcaagaaccagggcccgtcgtgctctagc 495
|||||||| ||||||||||||||||| ||| |||||| ||||||| | ||| |||||
Sbjct: 438 gactggagatccaagggcgccgtcacaccggtcaagacccagggctcangatgcgctagc 497
Query: 496 tgctgggcattcgtgacggcggcgacgatcgaga 529
|||||||| |||||||||| |||||||||||||
Sbjct: 498 tgctgggcgttcgtgacggttgcgacgatcgaga 531
>gb|BQ469352.1|BQ469352 HM04E11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04E11
5-PRIME, mRNA sequence
Length = 629
Score = 133 bits (67), Expect = 2e-029
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 136 gacaggctgatgatggaccggttcctcagctggcaggcgacgtacaaccggtcgtacccg 195
|||| ||||||||||||| |||||| | |||||||| ||| ||||||||||||||| |
Sbjct: 110 gacatgctgatgatggacaggttccgccagtggcaggccacgcacaaccggtcgtacctg 169
Query: 196 acggcggaggagaggcagcgccggttccaggtgtaccgccgcaacattgagcacatcgag 255
| ||||||||||||| ||| || |||||||||||| || |||| | ||| |||||||
Sbjct: 170 agcgcggaggagaggctgcggcgcttccaggtgtacagcgacaacgtggagtacatcgac 229
Query: 256 gccaccaaccgggcgggcaacctgacgtacacgctcggcgagaaccagttcgccgacctc 315
|||||||||||| ||| |||| || ||| |||||||||||| ||||||||||||||
Sbjct: 230 gccaccaaccggcgcggcgacctcacctacgagctcggcgagaatgagttcgccgacctc 289
Query: 316 acggaggaggagttcctgg 334
|| |||||||||||||||
Sbjct: 290 acccaggaggagttcctgg 308
Score = 121 bits (61), Expect = 7e-026
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 436 gactggaggtccaagggcgccgtcacgccgatcaagaaccagggcccgtcgtgctctagc 495
|||||||| ||||||||||||||||| ||| |||||| ||||||| | ||| |||||
Sbjct: 443 gactggagatccaagggcgccgtcacaccggtcaagacccagggctcaggatgcgctagc 502
Query: 496 tgctgggcattcgtgacggcggcgacgatcgagagcatcaccaagatcacgacagggaag 555
|||||||| |||||||||| ||||||||||||| ||| | ||||| ||| | ||||
Sbjct: 503 tgctgggcgttcgtgacggttgcgacgatcgagactctcaactggatcaggacggngaag 562
Query: 556 ctggtgtcgctgtcggagcaggagctgatcgactgcgacccctacgacggcggctgcaac 615
|||||| |||||||||||||| ||||| | ||||| |||| ||||||||||| ||||||
Sbjct: 563 ctggtggcgctgtcggagcagcagctggtggactgtgaccagtacgacggcgggtgcaac 622
>gb|BM442118.2|BM442118 EBan01_SQ002_E07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_E07 5', mRNA sequence
Length = 362
Score = 133 bits (67), Expect = 2e-029
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 136 gacaggctgatgatggaccggttcctcagctggcaggcgacgtacaaccggtcgtacccg 195
|||| ||||||||||||| |||||| | |||||||| ||| ||||||||||||||| |
Sbjct: 118 gacatgctgatgatggacaggttccgccagtggcaggccacgcacaaccggtcgtacctg 177
Query: 196 acggcggaggagaggcagcgccggttccaggtgtaccgccgcaacattgagcacatcgag 255
| ||||||||||||| ||| || |||||||||||| || |||| | ||| |||||||
Sbjct: 178 agcgcggaggagaggctgcggcgcttccaggtgtacagcgacaacgtggagtacatcgac 237
Query: 256 gccaccaaccgggcgggcaacctgacgtacacgctcggcgagaaccagttcgccgacctc 315
|||||||||||| ||| |||| || ||| |||||||||||| ||||||||||||||
Sbjct: 238 gccaccaaccggcgcggcgacctcacctacgagctcggcgagaatgagttcgccgacctc 297
Query: 316 acggaggaggagttcctgg 334
|| |||||||||||||||
Sbjct: 298 acccaggaggagttcctgg 316
>gb|BM442282.2|BM442282 EBan01_SQ002_M05_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_M05 5', mRNA sequence
Length = 317
Score = 133 bits (67), Expect = 2e-029
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 136 gacaggctgatgatggaccggttcctcagctggcaggcgacgtacaaccggtcgtacccg 195
|||| ||||||||||||| |||||| | |||||||| ||| ||||||||||||||| |
Sbjct: 31 gacatgctgatgatggacaggttccgccagtggcaggccacgcacaaccggtcgtacctg 90
Query: 196 acggcggaggagaggcagcgccggttccaggtgtaccgccgcaacattgagcacatcgag 255
| ||||||||||||| ||| || |||||||||||| || |||| | ||| |||||||
Sbjct: 91 agcgcggaggagaggctgcggcgcttccaggtgtacagcgacaacgtggagtacatcgac 150
Query: 256 gccaccaaccgggcgggcaacctgacgtacacgctcggcgagaaccagttcgccgacctc 315
|||||||||||| ||| |||| || ||| |||||||||||| ||||||||||||||
Sbjct: 151 gccaccaaccggcgcggcgacctcacctacgagctcggcgagaatgagttcgccgacctc 210
Query: 316 acggaggaggagttcctgg 334
|| |||||||||||||||
Sbjct: 211 acccaggaggagttcctgg 229
>gb|BM442197.2|BM442197 EBan01_SQ002_I02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I02 5', mRNA sequence
Length = 560
Score = 119 bits (60), Expect = 3e-025
Identities = 186/228 (81%)
Strand = Plus / Plus
Query: 819 ggccatcgagatgggcggcagcctgcagttctacagcggcggcgtcttctcggggcagtg 878
|||||||||| | |||||| || ||||||||||||| ||||||||| |||||| | ||
Sbjct: 256 ggccatcgaggtcggcggcggcatgcagttctacaggagcggcgtctactcgggcccctg 315
Query: 879 cgggaccaggatgaaccacgccatcaccgtcgtcggctacggcgccgactcctcctcggg 938
|||||| | | |||||| ||||||||||||||||||||| |||| || || ||||
Sbjct: 316 cgggacagcgctcgctcacgccgtcaccgtcgtcggctacggcgtcgacgccgccacggg 375
Query: 939 cctcaagtactggctcgtcaagaactcgtgggggcagagctggggcgagcgcggatacct 998
||||||||||||| || ||||||||||||||||||| ||||| ||| |||| ||| |
Sbjct: 376 ggtcaagtactggctggtgaagaactcgtgggggcagacgtggggtgagagcggctacat 435
Query: 999 gcggatgcgccgcgacgtcgggcgcgggggactgtgcggcatcgcgct 1046
|| |||||||||||| |||| || ||| || ||||||||||||||
Sbjct: 436 ccgcatgcgccgcgacatcggcggcccggggctctgcggcatcgcgct 483
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 563 cgctgtcggagcaggagctgatcgactgcgacccctacgacggcggctgcaac 615
|||||||||||||| ||||| | ||||| |||| ||||||||||| ||||||
Sbjct: 3 cgctgtcggagcagcagctggtggactgtgaccagtacgacggcgggtgcaac 55
>gb|BM442325.2|BM442325 EBan01_SQ002_O01_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_O01 5', mRNA sequence
Length = 299
Score = 115 bits (58), Expect = 4e-024
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 136 gacaggctgatgatggaccggttcctcagctggcaggcgacgtacaaccggtcgtacccg 195
|||| ||||||||||||| |||||| | |||||||| ||| ||||||||||||||| |
Sbjct: 116 gacatgctgatgatggacaggttccgccagtggcaggccacgcacaaccggtcgtacctg 175
Query: 196 acggcggaggagaggcagcgccggttccaggtgtaccgccgcaacattgagcacatcgag 255
| ||||||||||||| ||| || |||||||||||| || |||| | ||| |||||||
Sbjct: 176 agcgcggaggagaggctgcggcgcttccaggtgtacagcgacaacgtggagtacatcgac 235
Query: 256 gccaccaaccgggcgggcaacctgacgtacacgctcggcgagaaccagttcgccgacctc 315
|||||||||||| ||| |||| || ||| |||||||||||| ||||||||||||||
Sbjct: 236 gccaccaaccggcgcggcgacctcacctacgagctcggcgagaatgagttcgccgacctc 295
Query: 316 ac 317
||
Sbjct: 296 ac 297
>gb|BU994426.1|BU994426 HM07A13r HM Hordeum vulgare subsp. vulgare cDNA clone HM07A13
5-PRIME, mRNA sequence
Length = 527
Score = 113 bits (57), Expect = 2e-023
Identities = 156/189 (82%)
Strand = Plus / Plus
Query: 804 gcagcccgtggccgcggccatcgagatgggcggcagcctgcagttctacagcggcggcgt 863
||||||||| ||||||||||||||| | ||| || | |||||||||||| |||||||
Sbjct: 148 gcagcccgtcgccgcggccatcgagctcggcagcgacatgcagttctacaagagcggcgt 207
Query: 864 cttctcggggcagtgcgggaccaggatgaaccacgccatcaccgtcgtcggctacggcgc 923
|| |||||| | |||||| | || | | |||||| ||||| ||||||||||||||||
Sbjct: 208 ctactcgggcccctgcggggcgcggctcgagcacgccgtcaccatcgtcggctacggcgc 267
Query: 924 cgactcctcctcgggcctcaagtactggctcgtcaagaactcgtgggggcagagctgggg 983
|||| ||| |||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct: 268 cgacgaatccacgggtgacaagtactggatcgtcaagaactcgtgggggcagacgtgggg 327
Query: 984 cgagcgcgg 992
|||||||||
Sbjct: 328 cgagcgcgg 336
>emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cysteine endopeptidase EP-A
Length = 2752
Score = 89.7 bits (45), Expect = 2e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 530 gcatcaccaagatcacgacagggaagctggtgtcgctgtcggagcaggagctgatcgact 589
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 1736 gcatcaacaagatcaggacggggaagctggtgtcgctgtcggagcaggagctcatggact 1795
Query: 590 gcgac 594
|||||
Sbjct: 1796 gcgac 1800
>emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cysteine endopeptidase EP-A
Length = 1299
Score = 89.7 bits (45), Expect = 2e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 530 gcatcaccaagatcacgacagggaagctggtgtcgctgtcggagcaggagctgatcgact 589
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 542 gcatcaacaagatcaggacggggaagctggtgtcgctgtcggagcaggagctcatggact 601
Query: 590 gcgac 594
|||||
Sbjct: 602 gcgac 606
>gb|BQ471140.1|BQ471140 HV01B20T HV Hordeum vulgare subsp. vulgare cDNA clone HV01B20
5-PRIME, mRNA sequence
Length = 542
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 553 aagctggtgtcgctgtcggagcaggagctgatcgactgcgac 594
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 aagctggtgtcgctgtcggagcaggagctcatcgactgcgac 488
>gb|BQ471157.1|BQ471157 HV01F03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01F03
5-PRIME, mRNA sequence
Length = 584
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 553 aagctggtgtcgctgtcggagcaggagctgatcgactgcgac 594
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 aagctggtgtcgctgtcggagcaggagctcatcgactgcgac 295
Score = 58.0 bits (29), Expect = 8e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 655 aacggcgggctcaccaccgaggccaactacccgtacc 691
|||||||||||||||||||||||| |||||||||||
Sbjct: 359 aacggcgggctcaccaccgaggccgcctacccgtacc 395
>gb|BM442217.2|BM442217 EBan01_SQ002_I24_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I24 5', mRNA sequence
Length = 305
Score = 75.8 bits (38), Expect = 3e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 540 gatcacgacagggaagctggtgtcgctgtcggagcaggagctgatcgactgcgaccccta 599
||||| ||| |||||||||||| |||||||||||||| ||||| | ||||| |||| |||
Sbjct: 24 gatcaagacggggaagctggtggcgctgtcggagcagcagctggtggactgtgaccacta 83
Query: 600 cgacggcggctgca 613
||||||||| ||||
Sbjct: 84 cgacggcgggtgca 97
>gb|CB884207.1|CB884207 HV11M07r HV Hordeum vulgare subsp. vulgare cDNA clone HV11M07
5-PRIME, mRNA sequence
Length = 520
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 553 aagctggtgtcgctgtcggagcaggagctgatcgactgcgac 594
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 aagctggtgtcgctgtcggagcaggagctcatcgactgcgac 387
Score = 58.0 bits (29), Expect = 8e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 655 aacggcgggctcaccaccgaggccaactacccgtacc 691
|||||||||||||||||||||||| |||||||||||
Sbjct: 451 aacggcgggctcaccaccgaggccgcctacccgtacc 487
>emb|A98645.1| Sequence 1 from Patent WO9910500
Length = 1286
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 496 tgctgggcattcgtgacggcggcgacgatcgagagcatcaccaagatcacgacagggaag 555
|||||||| |||| | ||| |||| ||||||| |||| | |||||| | ||||||| ||
Sbjct: 514 tgctgggcgttcgcggcggtggcggcgatcgaaggcatgaacaagattaggacaggggag 573
Query: 556 ctggtgtcgctgtcggagcagg 577
|||||||||||||| |||||||
Sbjct: 574 ctggtgtcgctgtccgagcagg 595
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 890 tgaaccacgccatcaccgtcgtcggctac 918
||||||||||| ||||| |||||||||||
Sbjct: 917 tgaaccacgccgtcaccatcgtcggctac 945
>gb|AL505180.1|AL505180 AL505180 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07K08V 5', mRNA sequence
Length = 699
Score = 58.0 bits (29), Expect = 8e-007
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 555 gctggtgtcgctgtcggagcaggagctgatcgactgcgac 594
||||| |||||||||| ||||||||||||| |||||||||
Sbjct: 493 gctggagtcgctgtcgnagcaggagctgatggactgcgac 532
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 448 aagggcgccgtcacgccgatcaagaaccaggg 479
||||| ||||| |||||| |||||||||||||
Sbjct: 389 aagggggccgtgacgccggtcaagaaccaggg 420
>emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine proteinase
Length = 5593
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 555 gctggtgtcgctgtcggagcaggagctgatcgactgcgac 594
|||||||||||||||||||||| ||||| | |||||||||
Sbjct: 4393 gctggtgtcgctgtcggagcagcagctggtggactgcgac 4432
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 303 gttcgccgacctcacggaggaggagttcc 331
||||||||||||||| || ||||||||||
Sbjct: 3659 gttcgccgacctcaccgacgaggagttcc 3687
>gb|AL450540.1|AL450540 AL450540 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B06u 5', mRNA sequence
Length = 481
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 70 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 129
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 130 ggagttcatcgaggc 144
>gb|AL450820.1|AL450820 AL450820 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04G03u 5', mRNA sequence
Length = 273
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 19 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 78
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 79 ggagttcatcgaggc 93
>gb|AL450852.1|AL450852 AL450852 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04I21u 5', mRNA sequence
Length = 382
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 192 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 251
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 252 ggagttcatcgaggc 266
>gb|AL500436.1|AL500436 AL500436 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06K02r 3', mRNA sequence
Length = 606
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 483 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 424
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 423 ggagttcatcgaggc 409
>gb|BF621715.2|BF621715 HVSMEa0011P20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011P20f, mRNA sequence
Length = 816
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 186 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 245
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 246 ggagttcatcgaggc 260
>gb|BF628094.1|BF628094 HVSMEb0003B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003B22f, mRNA sequence
Length = 499
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 145 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 204
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 205 ggagttcatcgaggc 219
>gb|BF628191.2|BF628191 HVSMEb0003G02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003G02f, mRNA sequence
Length = 505
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 185 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 244
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 245 ggagttcatcgaggc 259
>gb|BF628998.2|BF628998 HVSMEb0009I02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I02f, mRNA sequence
Length = 796
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 177 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 236
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 237 ggagttcatcgaggc 251
>gb|BG300443.1|BG300443 HVSMEb0017B09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B09f, mRNA sequence
Length = 869
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 177 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 236
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 237 ggagttcatcgaggc 251
>gb|BG300664.1|BG300664 HVSMEb0017O03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017O03f, mRNA sequence
Length = 921
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 184 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 243
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 244 ggagttcatcgaggc 258
>gb|BF616064.2|BF616064 HVSMEc0001H07f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001H07f, mRNA sequence
Length = 572
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 162 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 221
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 222 ggagttcatcgaggc 236
>gb|BF618541.2|BF618541 HVSMEc0005P20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005P20f, mRNA sequence
Length = 587
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 166 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 225
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 226 ggagttcatcgaggc 240
>gb|BF618995.2|BF618995 HVSMEc0008F14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008F14f, mRNA sequence
Length = 826
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 165 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 224
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 225 ggagttcatcgaggc 239
>gb|BF616669.2|BF616669 HVSMEc0012B09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012B09f, mRNA sequence
Length = 560
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 172 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 231
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 232 ggagttcatcgaggc 246
>gb|BI952787.1|BI952787 HVSMEm0007M17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007M17f, mRNA sequence
Length = 1123
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 187 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 246
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 247 ggagttcatcgaggc 261
>gb|BI955647.1|BI955647 HVSMEm0023O10f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023O10f, mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 174 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 233
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 234 ggagttcatcgaggc 248
>gb|BF620030.3|BF620030 HVSMEc0011D13f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0011D13f, mRNA sequence
Length = 431
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 163 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 222
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 223 ggagttcatcgaggc 237
>gb|AV917445.1|AV917445 AV917445 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18p06 5', mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 177 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 236
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 237 ggagttcatcgaggc 251
>gb|AV923103.1|AV923103 AV923103 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3m18 5', mRNA sequence
Length = 500
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 187 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 246
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 247 ggagttcatcgaggc 261
>gb|AV923200.1|AV923200 AV923200 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12d08 5', mRNA sequence
Length = 677
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 177 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 236
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 237 ggagttcatcgaggc 251
>gb|AV924415.1|AV924415 AV924415 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14h18 5', mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 178 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 237
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 238 ggagttcatcgaggc 252
>gb|AV924771.1|AV924771 AV924771 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16o06 5', mRNA sequence
Length = 571
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 178 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 237
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 238 ggagttcatcgaggc 252
>gb|AV924784.1|AV924784 AV924784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16p06 5', mRNA sequence
Length = 571
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 179 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 238
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 239 ggagttcatcgaggc 253
>gb|AV925173.1|AV925173 AV925173 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b05 5', mRNA sequence
Length = 677
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 192 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 251
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 252 ggagttcatcgaggc 266
>gb|AV925239.1|AV925239 AV925239 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22f18 5', mRNA sequence
Length = 634
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 186 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 245
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 246 ggagttcatcgaggc 260
>gb|AV925573.1|AV925573 AV925573 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24p02 5', mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 178 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 237
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 238 ggagttcatcgaggc 252
>gb|AV925578.1|AV925578 AV925578 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24p13 5', mRNA sequence
Length = 631
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 178 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 237
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 238 ggagttcatcgaggc 252
>gb|AV925582.1|AV925582 AV925582 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24p17 5', mRNA sequence
Length = 634
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 178 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 237
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 238 ggagttcatcgaggc 252
>gb|AV925595.1|AV925595 AV925595 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25a14 5', mRNA sequence
Length = 499
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 187 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 246
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 247 ggagttcatcgaggc 261
>gb|AV926595.1|AV926595 AV926595 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19p18 5', mRNA sequence
Length = 630
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 187 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 246
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 247 ggagttcatcgaggc 261
>gb|AV926718.1|AV926718 AV926718 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23i06 5', mRNA sequence
Length = 644
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 97 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 156
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 157 ggagttcatcgaggc 171
>gb|AV926725.1|AV926725 AV926725 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23i18 5', mRNA sequence
Length = 464
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 61 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 120
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 121 ggagttcatcgaggc 135
>gb|AV926735.1|AV926735 AV926735 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23j05 5', mRNA sequence
Length = 229
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 60 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 119
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 120 ggagttcatcgaggc 134
>gb|AV926964.1|AV926964 AV926964 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26d24 5', mRNA sequence
Length = 646
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 183 ccggtcgtacccgacggcggaggagaggcagcgccggttccaggtgtaccgccgcaacat 242
|||||||||||| || | |||||||| || ||| |||||| |||||||||| |||||||
Sbjct: 187 ccggtcgtaccccaccgtggaggagaagctgcgtcggttcgaggtgtaccggagcaacat 246
Query: 243 tgagcacatcgaggc 257
||| |||||||||
Sbjct: 247 ggagttcatcgaggc 261
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 227,923
Number of Sequences: 312970
Number of extensions: 227923
Number of successful extensions: 69682
Number of sequences better than 0.5: 129
Number of HSP's better than 0.5 without gapping: 128
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69404
Number of HSP's gapped (non-prelim): 270
length of query: 1393
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1374
effective length of database: 169,188,109
effective search space: 232464461766
effective search space used: 232464461766
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)