BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, n... 315 8e-085
gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA,... 309 5e-083
gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DA... 307 2e-082
gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA li... 299 5e-080
gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA li... 299 5e-080
gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA li... 299 5e-080
gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA li... 299 5e-080
gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA li... 299 5e-080
gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA li... 299 5e-080
gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. v... 299 5e-080
gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. v... 299 5e-080
gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, dro... 299 5e-080
gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. v... 299 5e-080
gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. v... 299 5e-080
dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldeh... 299 5e-080
gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA li... 297 2e-079
gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. v... 297 2e-079
gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA li... 283 3e-075
gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm libra... 283 3e-075
gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. v... 274 3e-072
gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke devel... 272 1e-071
gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA li... 266 7e-070
gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, dro... 256 6e-067
gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm librar... 252 1e-065
gb|BG299265.1|BG299265 HVSMEa0019A19f Hordeum vulgare seedl... 234 2e-060
gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. v... 232 9e-060
gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, ... 208 1e-052
gb|BU990251.1|BU990251 HF24I09r HF Hordeum vulgare subsp. v... 198 1e-049
gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. v... 188 1e-046
gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. v... 188 1e-046
gb|BU984894.1|BU984894 HF05G21r HF Hordeum vulgare subsp. v... 184 2e-045
gb|BJ470674.1|BJ470674 BJ470674 K. Sato unpublished cDNA li... 176 5e-043
gb|BJ472041.1|BJ472041 BJ472041 K. Sato unpublished cDNA li... 176 5e-043
gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa... 170 3e-041
gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm librar... 168 1e-040
gb|BE060881.2|BE060881 HVSMEg0013L09f Hordeum vulgare pre-a... 159 1e-037
gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. v... 147 4e-034
gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no... 131 3e-029
gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. v... 127 4e-028
gb|BM370947.2|BM370947 EBro04_SQ003_A05_R root, 3 week, sal... 123 6e-027
gb|BM100769.1|BM100769 EBpi01_SQ001_M01_R pistil, 1 DPA, no... 101 2e-020
gb|BE601982.3|BE601982 HVSMEh0100L22f Hordeum vulgare 5-45 ... 96 1e-018
gb|BJ465869.1|BJ465869 BJ465869 K. Sato unpublished cDNA li... 96 1e-018
gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots... 76 1e-012
gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike... 64 5e-009
gb|AV834368.1|AV834368 AV834368 K. Sato unpublished cDNA li... 58 3e-007
gb|BM817302.1|BM817302 HC105A10_T3.ab1 HC Hordeum vulgare s... 58 3e-007
gb|AJ436269.1|AJ436269 AJ436269 S00002 Hordeum vulgare subs... 58 3e-007
gb|BQ763641.1|BQ763641 EBro03_SQ005_C06_R root, 3 week, wat... 58 3e-007
gb|BU985741.1|BU985741 HF08H18r HF Hordeum vulgare subsp. v... 58 3e-007
gb|BU988051.1|BU988051 HF16I12r HF Hordeum vulgare subsp. v... 58 3e-007
gb|CA000599.1|CA000599 HS07M01u HS Hordeum vulgare subsp. v... 58 3e-007
dbj|AB063179.1| Hordeum vulgare BBD1 mRNA for betaine aldeh... 58 3e-007
gb|BU967344.1|BU967344 HB04A04r BC Hordeum vulgare subsp. v... 42 0.018
gb|BE437896.1|BE437896 SFR008.F07F990625 ITEC SFR Barley Le... 40 0.072
gb|BE421227.1|BE421227 HWM007.B04 ITEC HWM Barley Leaf Libr... 38 0.28
gb|BE422430.1|BE422430 HWM024cG.08r ITEC HWM Barley Leaf Li... 38 0.28
gb|BF263695.2|BF263695 HV_CEa0007G18f Hordeum vulgare seedl... 38 0.28
>gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_K14 5', mRNA sequence
Length = 510
Score = 315 bits (159), Expect = 8e-085
Identities = 294/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 11 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 70
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 71 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 130
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |||
Sbjct: 131 cgtgatttccggtgaccgtgagcgatgccagagattatctgaggagatcgaagcgggatg 190
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 191 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 250
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 251 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 310
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||||||||| |||||
Sbjct: 311 ggtgacggagtacacatctgatgcgccgtgggggtggta 349
>gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_M14 5', mRNA sequence
Length = 482
Score = 309 bits (156), Expect = 5e-083
Identities = 288/332 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 151 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 210
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 211 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 270
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |||
Sbjct: 271 cgtgatttccggtgaccgtgagcgatgccagagattatctgaggagatcgaagcgggatg 330
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 331 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 390
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 391 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 450
Query: 304 agtcacggagtacatctctgatgagccgtggg 335
|| |||||||||| ||||||| ||||||||
Sbjct: 451 ggtgacggagtacacatctgatgcgccgtggg 482
>gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021B19f, mRNA sequence
Length = 749
Score = 307 bits (155), Expect = 2e-082
Identities = 293/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 208 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 267
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 268 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 327
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| |||||||||||| |||||||||| || || |||
Sbjct: 328 cgtgatttccggtgaccgtgagcgatgccagagattagctgaggagatcgaagcgggatg 387
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 388 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 447
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 448 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 507
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||||||||| |||||
Sbjct: 508 ggtgacggagtacacatctgatgcgccgtgggggtggta 546
>gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a22 3', mRNA sequence
Length = 614
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 451 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 392
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 391 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 332
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 331 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 272
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 271 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 212
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 211 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 152
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 151 ggtgacggagtacacatctgatgcgccgtggggatggta 113
>gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38d10 3', mRNA sequence
Length = 713
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 484 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 425
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 424 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 365
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 364 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 305
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 304 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 245
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 244 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 185
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 184 ggtgacggagtacacatctgatgcgccgtggggatggta 146
>gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 5', mRNA sequence
Length = 576
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 235 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 294
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 295 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 354
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 355 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 414
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 415 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 474
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 475 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 534
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 535 ggtgacggagtacacatctgatgcgccgtggggatggta 573
>gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12p17 3', mRNA sequence
Length = 705
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 586 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 527
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 526 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 467
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 466 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 407
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 406 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 347
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 346 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 287
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 286 ggtgacggagtacacatctgatgcgccgtggggatggta 248
>gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26h04 3', mRNA sequence
Length = 606
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 571 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 512
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 511 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 452
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 451 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 392
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 391 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 332
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 331 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 272
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 271 ggtgacggagtacacatctgatgcgccgtggggatggta 233
>gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 3', mRNA sequence
Length = 708
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 545 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 486
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 485 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 426
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 425 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 366
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 365 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 306
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 305 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 246
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 245 ggtgacggagtacacatctgatgcgccgtggggatggta 207
>gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. vulgare cDNA clone HU04E06
3-PRIME, mRNA sequence
Length = 571
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 554 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 495
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 494 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 435
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 434 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 375
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 374 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 315
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 314 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 255
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 254 ggtgacggagtacacatctgatgcgccgtggggatggta 216
>gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P19
3-PRIME, mRNA sequence
Length = 535
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 502 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 443
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 442 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 383
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 382 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 323
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 322 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 263
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 262 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 203
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 202 ggtgacggagtacacatctgatgcgccgtggggatggta 164
>gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_K04 5', mRNA sequence
Length = 458
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 63 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 122
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 123 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 182
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| |||||||||||| |||||||||| || || |||
Sbjct: 183 cgtgatttccggtgaccgtgagcgatgccagagattagctgaggagatcgaagcgggatg 242
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 243 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 302
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct: 303 cagcggctttgggcgagagctcggagaaaggggcattgataactacctgagcatcaagca 362
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||||||||| |||||
Sbjct: 363 ggtgacggagtacacatctgatgcgccgtgggggtggta 401
>gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. vulgare cDNA clone HF11M21
5-PRIME, mRNA sequence
Length = 581
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 89 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 148
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 149 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 208
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 209 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 268
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 269 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 328
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 329 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 388
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 389 ggtgacggagtacacatctgatgcgccgtggggatggta 427
>gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C16
5-PRIME, mRNA sequence
Length = 491
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 23 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 82
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 83 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 142
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 143 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 202
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 203 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 262
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 263 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 322
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 323 ggtgacggagtacacatctgatgcgccgtggggatggta 361
>dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldehyde dehydrogenase,
complete cds
Length = 1889
Score = 299 bits (151), Expect = 5e-080
Identities = 292/339 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 1201 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 1260
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 1261 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 1320
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 1321 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 1380
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 1381 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 1440
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 1441 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 1500
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 1501 ggtgacggagtacacatctgatgcgccgtggggatggta 1539
>gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25o04 3', mRNA sequence
Length = 575
Score = 297 bits (150), Expect = 2e-079
Identities = 291/339 (85%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 541 cacatcaatgganatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 482
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 481 ttctacngaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 422
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 421 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 362
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 361 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 302
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 301 cagcggctttgggcgagagctcggagaagggggcattgataactacntgagcatcaagca 242
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 241 ggtgacggagtacacatctgatgcgccgtggggatggta 203
>gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. vulgare cDNA clone HM09D03
3-PRIME, mRNA sequence
Length = 574
Score = 297 bits (150), Expect = 2e-079
Identities = 291/338 (86%)
Strand = Plus / Minus
Query: 5 acatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattt 64
||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 574 acatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattt 515
Query: 65 agcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgct 124
|| ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 514 tctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgcc 455
Query: 125 gtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatt 184
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 454 gtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgc 395
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 394 atctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgc 335
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 334 agcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcag 275
Query: 305 gtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| |||||||||||||||
Sbjct: 274 gtgacggagtacacatctgatgcgccgtggggatggta 237
>gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare leaves vegetative stage Hordeum vulgare subsp.
vulgare cDNA clone baak1n06, mRNA sequence
Length = 674
Score = 283 bits (143), Expect = 3e-075
Identities = 290/339 (85%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||| ||||||||||||| ||||||||||||||||| || |||||
Sbjct: 641 cacatcaatggagatttggcgggaggaagtctttggtccagtcctgtgtgtgaaggaatt 582
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 581 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 522
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| ||||||| |||||||||||| |||||||||| || || |||
Sbjct: 521 cgtgatttccggtgacagtgagcgatgccagagattagctgaggagatcgaagcgggatg 462
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 461 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 402
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 401 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 342
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||| ||||| |||||
Sbjct: 341 ggtgacggagtacacatctgatgcgccctgggggtggta 303
>gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL53f12 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 587
Score = 283 bits (143), Expect = 3e-075
Identities = 290/339 (85%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||| ||||||||||||| ||||||||||||||||| || |||||
Sbjct: 521 cacatcaatggagatttggcgggaggaagtctttggtccagtcctgtgtgtgaaggaatt 462
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 461 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 402
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| ||||||| |||||||||||| |||||||||| || || |||
Sbjct: 401 cgtgatttccggtgacagtgagcgatgccagagattagctgaggagatcgaagcgggatg 342
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 341 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 282
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 281 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 222
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||| ||||| |||||
Sbjct: 221 ggtgacggagtacacatctgatgcgccctgggggtggta 183
>gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. vulgare cDNA clone HB30O13
5-PRIME, mRNA sequence
Length = 474
Score = 274 bits (138), Expect = 3e-072
Identities = 270/314 (85%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 155 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 214
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 215 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 274
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 275 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 334
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 335 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 394
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 395 cagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagca 454
Query: 304 agtcacggagtaca 317
|| ||||||||||
Sbjct: 455 ggtgacggagtaca 468
>gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02G16u 3',
mRNA sequence
Length = 648
Score = 272 bits (137), Expect = 1e-071
Identities = 292/341 (85%), Gaps = 2/341 (0%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtcc-agtcctgtgtgttaaagaat 62
|||||||||||| |||||||||||||||||||| ||||| |||||||||||| || ||||
Sbjct: 502 cacatcaatggagatttggagggaggaagtctttggtcccagtcctgtgtgtgaaggaat 443
Query: 63 ttagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtg 122
|| || ||||| |||||||| ||||||||||| ||||| || |||||| | |||||||
Sbjct: 442 tttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtg 383
Query: 123 ctgtaatttct-ggtgatcgtgagcgctgccagagattatctgaggagattgatgctgga 181
| || ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 382 ccgtgatttcccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcggga 323
Query: 182 attatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaag 241
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 322 tgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaag 263
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|| || || ||||| || ||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 262 cgcagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaag 203
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
|| || |||||||||| ||||||| |||||||||||||||
Sbjct: 202 caggtgacggagtacacatctgatgcgccgtggggatggta 162
>gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27l03 5', mRNA sequence
Length = 667
Score = 266 bits (134), Expect = 7e-070
Identities = 272/318 (85%)
Strand = Plus / Plus
Query: 25 ggaggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccat 84
|||||||||||| ||||||||||||||||| || |||||| || ||||| ||||||||
Sbjct: 10 ggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccat 69
Query: 85 tgaactggccaatgatacacagtatggtttagctggtgctgtaatttctggtgatcgtga 144
||||||||||| ||||| || |||||| | |||||||| || ||||| ||||| |||||
Sbjct: 70 cgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtga 129
Query: 145 gcgctgccagagattatctgaggagattgatgctggaattatctgggtaaactgctcaca 204
||| ||||||||||| |||||||||| || || ||| |||||||| |||||||| ||
Sbjct: 130 gcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgctcgca 189
Query: 205 gccctgcttctgccaggctccctggggcggtaacaagcgtagtggatttggacgtgagct 264
||| ||||||||||| ||||| ||||| || |||||||| || || ||||| || |||||
Sbjct: 190 gccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgagagct 249
Query: 265 tggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctga 324
|||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||
Sbjct: 250 cggagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctga 309
Query: 325 tgagccgtggggatggta 342
|| |||||||||||||||
Sbjct: 310 tgcgccgtggggatggta 327
>gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_A18 5', mRNA sequence
Length = 486
Score = 256 bits (129), Expect = 6e-067
Identities = 261/305 (85%)
Strand = Plus / Plus
Query: 38 ggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaat 97
||||||||||||||||| || |||||| || ||||| |||||||| |||||||||||
Sbjct: 5 ggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggccaac 64
Query: 98 gatacacagtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagaga 157
||||| || |||||| | |||||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 65 gatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgccagaga 124
Query: 158 ttatctgaggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgc 217
||| |||||||||| || || ||| |||||||| |||||||| ||||| |||||||||
Sbjct: 125 ttagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgcttctgc 184
Query: 218 caggctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggc 277
|| ||||| |||||||| |||||||| || || ||||| || ||||| ||||||||||||
Sbjct: 185 caagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaagggggc 244
Query: 278 attgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtgggga 337
|||||||||||||||||| ||||||| || |||||||||| ||||||| |||||||||
Sbjct: 245 attgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtggggg 304
Query: 338 tggta 342
|||||
Sbjct: 305 tggta 309
>gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93g5 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 699
Score = 252 bits (127), Expect = 1e-065
Identities = 286/339 (84%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| ||||| ||||||||||||| ||||||||||||||||| || |||||
Sbjct: 542 cacatcaatggagatttgccgggaggaagtctttggtccagtcctgtgtgtaaaggaatt 483
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| |||||| |||| ||||| || |||||| | ||||||||
Sbjct: 482 ttctaccgaagaggaagccatcgaactgcccaacgatactcattatggtctggctggtgc 423
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| ||||||| |||||||||||| |||||||||| || || |||
Sbjct: 422 cgtgatttccggtgacagtgagcgatgccagagattagctgaggagatcgaagcgggatg 363
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 362 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcg 303
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
| || ||||| || ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 302 caacggctttgggcgagagctcggaaaagggggcattgataactacctgagcatcaagca 243
Query: 304 agtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| ||||||| ||| ||||| |||||
Sbjct: 242 ggtgacggagtacacatctgatgcgccctgggggtggta 204
>gb|BG299265.1|BG299265 HVSMEa0019A19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019A19f, mRNA sequence
Length = 648
Score = 234 bits (118), Expect = 2e-060
Identities = 277/330 (83%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 198 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 257
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| |||||||||| ||||| || |||||| | ||||||||
Sbjct: 258 ttctaccgaagaggaagccatcaaactggccaacgatactcattatggtctggctggtgc 317
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| |||||||||||| |||| ||||| || || |||
Sbjct: 318 cgtgatttccggtgaccgtgagcgatgccagagattaactgaagagatcgaagcgggatg 377
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|| ||||| |||||||||||||| ||||||||||| |||| |||||||| ||||||||
Sbjct: 378 catgtgggtgaactgctcacagccttgcttctgccacactccgtggggcgggaacaagcg 437
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
| || ||| | || ||||| |||||||| ||||| ||||||||||||||| |||||||
Sbjct: 438 catcggctttcggcgagagctcggagaaggcggcatcgataactacctgagcatcaagca 497
Query: 304 agtcacggagtacatctctgatgagccgtg 333
||| || |||| || ||||||| ||||||
Sbjct: 498 agtgactgagtgcacatctgatgcgccgtg 527
>gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22C24
5-PRIME, mRNA sequence
Length = 474
Score = 232 bits (117), Expect = 9e-060
Identities = 252/297 (84%)
Strand = Plus / Plus
Query: 46 cctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacaca 105
||||||||| || |||||| || ||||| |||||||| ||||||||||| ||||| ||
Sbjct: 11 cctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactca 70
Query: 106 gtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 165
|||||| | |||||||| || ||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 71 ttatggtctggctggtgccgtgatttccggtgaccgtgagcgatgccagagattggctga 130
Query: 166 ggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctcc 225
|||||| || || ||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 131 ggagatcgaggcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctcc 190
Query: 226 ctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcattgataa 285
||||| || |||||||| || || ||||| || ||||| ||||||||||||||||||||
Sbjct: 191 gtggggtgggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataa 250
Query: 286 ctacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggta 342
|||||||||| ||||||| || |||||||||| ||||||| |||||||||||||||
Sbjct: 251 ctacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtggggatggta 307
>gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J06 5', mRNA sequence
Length = 413
Score = 208 bits (105), Expect = 1e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 98 gatacacagtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagaga 157
||||| || |||||| | |||||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 2 gatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgccagaga 61
Query: 158 ttatctgaggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgc 217
||| |||||||||| || || ||| |||||||| |||||||| ||||| |||||||||
Sbjct: 62 ttagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgcttctgc 121
Query: 218 caggctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggc 277
|| ||||| |||||||| |||||||| || || ||||| || ||||| ||||||||||||
Sbjct: 122 caagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaagggggc 181
Query: 278 attgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtgggga 337
|||||||||||||||||| ||||||| || |||||||||| ||||||| |||||||||
Sbjct: 182 attgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtggggg 241
Query: 338 tggta 342
|||||
Sbjct: 242 tggta 246
>gb|BU990251.1|BU990251 HF24I09r HF Hordeum vulgare subsp. vulgare cDNA clone HF24I09
5-PRIME, mRNA sequence
Length = 599
Score = 198 bits (100), Expect = 1e-049
Identities = 205/240 (85%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 351 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 410
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 411 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 470
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 471 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 530
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 531 catctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcg 590
>gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
5-PRIME, mRNA sequence
Length = 454
Score = 188 bits (95), Expect = 1e-046
Identities = 185/215 (86%)
Strand = Plus / Plus
Query: 128 atttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaattatc 187
||||| ||||| |||||||| ||||||||||| |||||||||| || || ||| |||
Sbjct: 16 atttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatc 75
Query: 188 tgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagt 247
||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 76 tgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagc 135
Query: 248 ggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtc 307
|| ||||| || ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 136 ggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtg 195
Query: 308 acggagtacatctctgatgagccgtggggatggta 342
|||||||||| ||||||| |||||||||||||||
Sbjct: 196 acggagtacacatctgatgcgccgtggggatggta 230
>gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
3-PRIME, mRNA sequence
Length = 463
Score = 188 bits (95), Expect = 1e-046
Identities = 185/215 (86%)
Strand = Plus / Minus
Query: 128 atttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaattatc 187
||||| ||||| |||||||| ||||||||||| |||||||||| || || ||| |||
Sbjct: 450 atttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatc 391
Query: 188 tgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagt 247
||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 390 tgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagc 331
Query: 248 ggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtc 307
|| ||||| || ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 330 ggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtg 271
Query: 308 acggagtacatctctgatgagccgtggggatggta 342
|||||||||| ||||||| |||||||||||||||
Sbjct: 270 acggagtacacatctgatgcgccgtggggatggta 236
>gb|BU984894.1|BU984894 HF05G21r HF Hordeum vulgare subsp. vulgare cDNA clone HF05G21
5-PRIME, mRNA sequence
Length = 576
Score = 184 bits (93), Expect = 2e-045
Identities = 189/221 (85%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 356 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 415
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 416 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 475
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 476 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 535
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctc 224
|||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 536 catctgggtgaactgctcgcagccttgcttctgccaagctc 576
>gb|BJ470674.1|BJ470674 BJ470674 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25o04 5', mRNA sequence
Length = 426
Score = 176 bits (89), Expect = 5e-043
Identities = 182/213 (85%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 214 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 273
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 274 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 333
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 334 cgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 393
Query: 184 tatctgggtaaactgctcacagccctgcttctg 216
|||||||| |||||||| ||||| ||||||||
Sbjct: 394 catctgggtgaactgctcgcagccttgcttctg 426
>gb|BJ472041.1|BJ472041 BJ472041 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k21 5', mRNA sequence
Length = 387
Score = 176 bits (89), Expect = 5e-043
Identities = 184/216 (85%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 172 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 231
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||| ||||||||||| ||||| || |||||| | ||||||||
Sbjct: 232 ttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgc 291
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
| ||||| ||||| |||||||| ||||||||||| |||||||||| || || |||
Sbjct: 292 cgngatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatg 351
Query: 184 tatctgggtaaactgctcacagccctgcttctgcca 219
|||||||| |||||||| ||||| |||||||||||
Sbjct: 352 catctgggtgaactgctcgcagccttgcttctgcca 387
>gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008M13f, mRNA sequence
Length = 699
Score = 170 bits (86), Expect = 3e-041
Identities = 167/194 (86%)
Strand = Plus / Plus
Query: 149 tgccagagattatctgaggagattgatgctggaattatctgggtaaactgctcacagccc 208
|||||||||||| |||| ||||| || || ||| |||||||| |||||||| |||||
Sbjct: 4 tgccagagattagctgaagagatcgaagcgggatgcatctgggtgaactgctcgcagcct 63
Query: 209 tgcttctgccaggctccctggggcggtaacaagcgtagtggatttggacgtgagcttgga 268
||||||||||| ||||| |||||||| |||||||| || || ||||| || ||||| |||
Sbjct: 64 tgcttctgccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcgga 123
Query: 269 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 328
||||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |
Sbjct: 124 gaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcg 183
Query: 329 ccgtggggatggta 342
|||||||| |||||
Sbjct: 184 ccgtgggggtggta 197
>gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL96d4 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 593
Score = 168 bits (85), Expect = 1e-040
Identities = 205/245 (83%)
Strand = Plus / Minus
Query: 98 gatacacagtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagaga 157
||||| || |||||||| |||||||| || ||||| ||||| ||||||| |||||||||
Sbjct: 493 gatactcattatggtttggctggtgccgtgatttccggtgacagtgagcgatgccagaga 434
Query: 158 ttatctgaggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgc 217
||| || ||||||| | || ||| |||||||| |||||||| || || |||||||||
Sbjct: 433 ttagcttaggagatccaagcgggatgcatctgggtgaactgctcgcaaccttgcttctgc 374
Query: 218 caggctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggc 277
|| ||||| |||||||| |||||||| | || ||||| || ||||| ||||||||||||
Sbjct: 373 caagctccgtggggcgggaacaagcgcaacggctttgggcgagagctcggagaagggggc 314
Query: 278 attgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtgggga 337
|||||||||||||||||| ||||||| || |||||||||| ||||||| ||| |||||
Sbjct: 313 attgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccctggggg 254
Query: 338 tggta 342
|||||
Sbjct: 253 tggta 249
>gb|BE060881.2|BE060881 HVSMEg0013L09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013L09f, mRNA sequence
Length = 696
Score = 159 bits (80), Expect = 1e-037
Identities = 146/168 (86%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 210 cacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaatt 269
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || ||||| |||||||||||||||||||| ||||| || |||||| | ||||||||
Sbjct: 270 ttctaccgaagaggaagccattgaactggccaacgatactcattatggtctggctggtgc 329
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagat 171
|| ||||| ||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 330 cgtgatttccggtgaccgtgagcgatgccacagatttactgaggagat 377
>gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. vulgare cDNA clone HU02A14
3-PRIME, mRNA sequence
Length = 400
Score = 147 bits (74), Expect = 4e-034
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 382 atctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgc 323
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 304
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 322 agcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcag 263
Query: 305 gtcacggagtacatctctgatgagccgtggggatggta 342
|| |||||||||| | ||||| ||||||||||||||
Sbjct: 262 gtgacggagtacacatttgatgccccgtggggatggta 225
>gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_B21 5', mRNA sequence
Length = 127
Score = 131 bits (66), Expect = 3e-029
Identities = 105/118 (88%)
Strand = Plus / Plus
Query: 185 atctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgt 244
|||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 10 atctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcgc 69
Query: 245 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagc 302
|| || ||||| || ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 70 agcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagc 127
>gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10B24
3-PRIME, mRNA sequence
Length = 347
Score = 127 bits (64), Expect = 4e-028
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 211 cttctgccaggctccctggggcggtaacaagcgtagtggatttggacgtgagcttggaga 270
||||||||| ||||| ||||| || ||||||| || || ||||| || ||||| |||||
Sbjct: 347 cttctgccaagctccgtggggtgggaacaagcacagcggctttgggcgagagctcggaga 288
Query: 271 agggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagcc 330
||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |||
Sbjct: 287 agggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgcc 228
Query: 331 gtggggatggta 342
||||||||||||
Sbjct: 227 gtggggatggta 216
>gb|BM370947.2|BM370947 EBro04_SQ003_A05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_A05 5', mRNA sequence
Length = 156
Score = 123 bits (62), Expect = 6e-027
Identities = 131/154 (85%)
Strand = Plus / Plus
Query: 86 gaactggccaatgatacacagtatggtttagctggtgctgtaatttctggtgatcgtgag 145
||||||||||| ||||| || |||||| | |||||||| || ||||| ||||| ||||||
Sbjct: 3 gaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtgag 62
Query: 146 cgctgccagagattatctgaggagattgatgctggaattatctgggtaaactgctcacag 205
|| |||||||||||| |||||||||| || || ||| |||||||| |||||||| |||
Sbjct: 63 cgatgccagagattagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcag 122
Query: 206 ccctgcttctgccaggctccctggggcggtaaca 239
|| ||||||||||| ||||| |||||||| ||||
Sbjct: 123 ccttgcttctgccaagctccgtggggcgggaaca 156
>gb|BM100769.1|BM100769 EBpi01_SQ001_M01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ001_M01 5', mRNA sequence
Length = 329
Score = 101 bits (51), Expect = 2e-020
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 260 gagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatc 319
||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct: 30 gagctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtacaca 89
Query: 320 tctgatgagccgtggggatggta 342
||||||| ||||||||| |||||
Sbjct: 90 tctgatgcgccgtgggggtggta 112
>gb|BE601982.3|BE601982 HVSMEh0100L22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100L22f, mRNA sequence
Length = 711
Score = 95.6 bits (48), Expect = 1e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 267 gagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatg 326
||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||
Sbjct: 3 gagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatg 62
Query: 327 agccgtggggatggta 342
||||||||| |||||
Sbjct: 63 cgccgtgggggtggta 78
>gb|BJ465869.1|BJ465869 BJ465869 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27l03 3', mRNA sequence
Length = 477
Score = 95.6 bits (48), Expect = 1e-018
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 267 gagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatg 326
||||||||||||||||||||||||||||| |||| || || |||||||||| |||||||
Sbjct: 477 gagaagggggcattgataactacctgagcatcaaacaggtgacggagtacacatctgatg 418
Query: 327 agccgtggggatggta 342
|||||||||||||||
Sbjct: 417 cgccgtggggatggta 402
>gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02M15T 5', mRNA sequence
Length = 700
Score = 75.8 bits (38), Expect = 1e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctg 49
|||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 558 cacatcaatggagatttggagggaggaagtctttggtccagtcctg 603
>gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006H06f, mRNA sequence
Length = 832
Score = 63.9 bits (32), Expect = 5e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcc 47
|||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 421 cacatcaatggagatttggagggaggaagactttggtccagtcc 464
>gb|AV834368.1|AV834368 AV834368 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15l21, mRNA sequence
Length = 635
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaag 59
||||||||||| |||||||||| ||||||||||| || |||||| | ||||| ||||
Sbjct: 602 gcacatcaatgcaaatttggagagaggaagtctttggaccagtcatctgtgtgaaag 546
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| || || || ||||| |||||| ||||| |
Sbjct: 384 gctccgtggggagggaacaagcggagtggtttcggccgggagctaggagaatggggcctc 325
Query: 281 gataactacctgagcgtcaagcaagtcac 309
|| |||||||||||||| || ||||||||
Sbjct: 324 gagaactacctgagcgtgaaacaagtcac 296
>gb|BM817302.1|BM817302 HC105A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105A10_T3.ab1 similar to Glyceraldehyde-3-phosphate
dehydrogenase (NADP ),Benzaldehyde dehydrogenase (NAD ),
mRNA sequence
Length = 946
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| || || || ||||| |||||| ||||| |
Sbjct: 146 gctccgtggggagggaacaagcggagtggtttcggccgggagctaggagaatggggcctc 205
Query: 281 gataactacctgagcgtcaagcaagtcac 309
|| |||||||||||||| || ||||||||
Sbjct: 206 gagaactacctgagcgtgaaacaagtcac 234
>gb|AJ436269.1|AJ436269 AJ436269 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200024F01F1, mRNA sequence
Length = 600
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| || || || ||||| |||||| ||||| |
Sbjct: 213 gctccgtggggagggaacaagcggagtggtttcggccgggagctaggagaatggggcctc 272
Query: 281 gataactacctgagcgtcaagcaagtcac 309
|| |||||||||||||| || ||||||||
Sbjct: 273 gagaactacctgagcgtgaaacaagtcac 301
Score = 42.1 bits (21), Expect = 0.018
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 15 aaatttggagggaggaagtcttcggtccagtcctgtgtgttaaag 59
|||||||||| ||||||||||| || |||||| | ||||| ||||
Sbjct: 7 aaatttggagagaggaagtctttggaccagtcatctgtgtgaaag 51
>gb|BQ763641.1|BQ763641 EBro03_SQ005_C06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C06 5', mRNA sequence
Length = 507
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 221 gctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcatt 280
||||| ||||| || |||||||| ||||| || || || ||||| |||||| ||||| |
Sbjct: 122 gctccgtggggagggaacaagcggagtggtttcggccgggagctaggagaatggggcctc 181
Query: 281 gataactacctgagcgtcaagcaagtcac 309
|| |||||||||||||| || ||||||||
Sbjct: 182 gagaactacctgagcgtgaaacaagtcac 210
>gb|BU985741.1|BU985741 HF08H18r HF Hordeum vulgare subsp. vulgare cDNA clone HF08H18
5-PRIME, mRNA sequence
Length = 640
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 3 gcacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaag 59
||||||||||| |||||||||| ||||||||||| || |||||| | ||||| ||||
Sbjct: 543 gcacatcaatgcaaatttggagagaggaagtctttggaccagtcatctgtgtgaaag 599
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,868
Number of Sequences: 312970
Number of extensions: 43868
Number of successful extensions: 13627
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13559
Number of HSP's gapped (non-prelim): 63
length of query: 534
length of database: 175,134,539
effective HSP length: 19
effective length of query: 515
effective length of database: 169,188,109
effective search space: 87131876135
effective search space used: 87131876135
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)