BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DA... 458 e-127
gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA li... 458 e-127
dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldeh... 458 e-127
gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA li... 456 e-127
gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA li... 450 e-125
gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA li... 450 e-125
gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA,... 424 e-117
gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. v... 385 e-105
gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA li... 367 e-100
gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, dro... 363 5e-099
gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. v... 363 5e-099
gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, n... 361 2e-098
gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA li... 355 1e-096
gb|BU990251.1|BU990251 HF24I09r HF Hordeum vulgare subsp. v... 353 5e-096
gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA li... 351 2e-095
gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. v... 347 3e-094
gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. v... 347 3e-094
gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. v... 345 1e-093
gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. v... 339 7e-092
gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA li... 335 1e-090
gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm libra... 329 7e-089
gb|BU984894.1|BU984894 HF05G21r HF Hordeum vulgare subsp. v... 325 1e-087
gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke devel... 317 3e-085
gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA li... 315 1e-084
gb|BJ472041.1|BJ472041 BJ472041 K. Sato unpublished cDNA li... 309 6e-083
gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, dro... 305 1e-081
gb|BG299265.1|BG299265 HVSMEa0019A19f Hordeum vulgare seedl... 301 2e-080
gb|BJ470674.1|BJ470674 BJ470674 K. Sato unpublished cDNA li... 295 1e-078
gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm librar... 295 1e-078
gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. v... 280 6e-074
gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, ... 252 1e-065
gb|BE060881.2|BE060881 HVSMEg0013L09f Hordeum vulgare pre-a... 250 5e-065
gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm librar... 230 5e-059
gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. v... 222 1e-056
gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. v... 222 1e-056
gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa... 212 1e-053
gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. v... 184 2e-045
gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots... 178 2e-043
gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike... 172 1e-041
gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no... 167 6e-040
gb|BM370947.2|BM370947 EBro04_SQ003_A05_R root, 3 week, sal... 159 1e-037
gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. v... 153 9e-036
gb|BJ463472.1|BJ463472 BJ463472 K. Sato unpublished cDNA li... 141 3e-032
gb|BU995094.1|BU995094 HM09D03r HM Hordeum vulgare subsp. v... 123 8e-027
gb|BM100769.1|BM100769 EBpi01_SQ001_M01_R pistil, 1 DPA, no... 113 8e-024
gb|BU984384.1|BU984384 HF03M12r HF Hordeum vulgare subsp. v... 111 3e-023
gb|BQ766358.1|BQ766358 EBro08_SQ005_C20_R root, 3 week, dro... 107 5e-022
gb|BE601982.3|BE601982 HVSMEh0100L22f Hordeum vulgare 5-45 ... 98 5e-019
gb|BJ465869.1|BJ465869 BJ465869 K. Sato unpublished cDNA li... 98 5e-019
gb|CK125684.1|CK125684 BES1824110a19 BES1824 Hordeum vulgar... 98 5e-019
gb|BE196510.2|BE196510 HVSMEh0092H23f Hordeum vulgare 5-45 ... 86 2e-015
gb|AV834368.1|AV834368 AV834368 K. Sato unpublished cDNA li... 72 3e-011
gb|BM817302.1|BM817302 HC105A10_T3.ab1 HC Hordeum vulgare s... 72 3e-011
gb|AJ436269.1|AJ436269 AJ436269 S00002 Hordeum vulgare subs... 72 3e-011
gb|BQ763641.1|BQ763641 EBro03_SQ005_C06_R root, 3 week, wat... 72 3e-011
gb|CA000599.1|CA000599 HS07M01u HS Hordeum vulgare subsp. v... 72 3e-011
dbj|AB063179.1| Hordeum vulgare BBD1 mRNA for betaine aldeh... 72 3e-011
gb|BU985741.1|BU985741 HF08H18r HF Hordeum vulgare subsp. v... 58 4e-007
gb|BU988051.1|BU988051 HF16I12r HF Hordeum vulgare subsp. v... 58 4e-007
gb|BU967344.1|BU967344 HB04A04r BC Hordeum vulgare subsp. v... 44 0.006
gb|BE437896.1|BE437896 SFR008.F07F990625 ITEC SFR Barley Le... 40 0.091
gb|BM376158.2|BM376158 EBma01_SQ002_I10_R maternal, 4 DPA, ... 40 0.091
>gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021B19f, mRNA sequence
Length = 749
Score = 458 bits (231), Expect = e-127
Identities = 438/507 (86%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 41 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttt 100
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 101 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 160
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 161 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 220
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 221 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 280
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 281 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 340
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| ||| |||||||||| || || |||||||||||||| |||
Sbjct: 341 gaccgtgagcgatgccagagattagctgaggagatcgaagcgggatgcatctgggtgaac 400
Query: 391 tgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttgga 450
|||||||| || ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 401 tgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcgcagcggctttggg 460
Query: 451 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 510
|| ||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 461 cgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtac 520
Query: 511 atctctgatgagccgtggggatggtac 537
| ||||||| ||||||||| ||||||
Sbjct: 521 acatctgatgcgccgtgggggtggtac 547
>gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 5', mRNA sequence
Length = 576
Score = 458 bits (231), Expect = e-127
Identities = 438/507 (86%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 68 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 127
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 128 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 187
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 188 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 247
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 248 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 307
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 308 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 367
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| || |||||||||| || || |||||||||||||| |||
Sbjct: 368 gaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaac 427
Query: 391 tgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttgga 450
|||||||| || ||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 428 tgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttggg 487
Query: 451 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 510
|| ||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 488 cgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtac 547
Query: 511 atctctgatgagccgtggggatggtac 537
| ||||||| ||||||||||||||||
Sbjct: 548 acatctgatgcgccgtggggatggtac 574
>dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldehyde dehydrogenase,
complete cds
Length = 1889
Score = 458 bits (231), Expect = e-127
Identities = 438/507 (86%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1034 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 1093
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 1094 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 1153
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 1154 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 1213
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 1214 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 1273
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 1274 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 1333
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| || |||||||||| || || |||||||||||||| |||
Sbjct: 1334 gaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaac 1393
Query: 391 tgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttgga 450
|||||||| || ||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 1394 tgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttggg 1453
Query: 451 cgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtac 510
|| ||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 1454 cgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtac 1513
Query: 511 atctctgatgagccgtggggatggtac 537
| ||||||| ||||||||||||||||
Sbjct: 1514 acatctgatgcgccgtggggatggtac 1540
>gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38d10 3', mRNA sequence
Length = 713
Score = 456 bits (230), Expect = e-127
Identities = 437/506 (86%)
Strand = Plus / Minus
Query: 32 agggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttca 91
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 650 agggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttcg 591
Query: 92 tatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcatc 151
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || |||||
Sbjct: 590 tagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcatc 531
Query: 152 ttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaa 211
| ||||| || ||||| |||||||| || || || ||||| |||| |||||||||||| |
Sbjct: 530 tggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggaga 471
Query: 212 tctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatg 271
| |||||||||||||||||||||||||||||||| || || |||||| || ||||| |
Sbjct: 470 tttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagagg 411
Query: 272 aagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtg 331
||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| ||||
Sbjct: 410 aagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtg 351
Query: 332 atcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaact 391
| || ||||| |||||||| || |||||||||| || || |||||||||||||| ||||
Sbjct: 350 accgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaact 291
Query: 392 gctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggac 451
||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||||| |
Sbjct: 290 gctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggc 231
Query: 452 gtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtaca 511
| ||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct: 230 gagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtaca 171
Query: 512 tctctgatgagccgtggggatggtac 537
||||||| ||||||||||||||||
Sbjct: 170 catctgatgcgccgtggggatggtac 145
>gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a22 3', mRNA sequence
Length = 614
Score = 450 bits (227), Expect = e-125
Identities = 434/503 (86%)
Strand = Plus / Minus
Query: 35 gttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttcatat 94
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 614 gttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttcgtag 555
Query: 95 cgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcatcttg 154
||||||| |||| ||||||| || ||||| ||||| ||||| || || |||||| |
Sbjct: 554 cgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcatctgg 495
Query: 155 agaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatct 214
|||| || ||||| |||||||| || || || ||||| |||| |||||||||||| || |
Sbjct: 494 agaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggagattt 435
Query: 215 ggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaag 274
||||||||||||||||||||||||||||||| || || |||||| || ||||| ||||
Sbjct: 434 ggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaag 375
Query: 275 ccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatc 334
|||||||||| ||||||||||| || |||||| |||||||||| || ||||| ||||| |
Sbjct: 374 ccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgacc 315
Query: 335 gggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgct 394
| ||||| |||||||| || |||||||||| || || |||||||||||||| |||||||
Sbjct: 314 gtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgct 255
Query: 395 cgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtg 454
|||| || ||||||||||||||||| ||||| |||||||||||||| || ||||| || |
Sbjct: 254 cgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgag 195
Query: 455 agcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatct 514
|||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| |
Sbjct: 194 agctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacat 135
Query: 515 ctgatgagccgtggggatggtac 537
|||||| ||||||||||||||||
Sbjct: 134 ctgatgcgccgtggggatggtac 112
>gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 3', mRNA sequence
Length = 708
Score = 450 bits (227), Expect = e-125
Identities = 434/503 (86%)
Strand = Plus / Minus
Query: 35 gttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttcatat 94
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 708 gttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttcgtag 649
Query: 95 cgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcatcttg 154
||||||| |||| ||||||| || ||||| ||||| ||||| || || |||||| |
Sbjct: 648 cgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcatctgg 589
Query: 155 agaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatct 214
|||| || ||||| |||||||| || || || ||||| |||| |||||||||||| || |
Sbjct: 588 agaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggagattt 529
Query: 215 ggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaag 274
||||||||||||||||||||||||||||||| || || |||||| || ||||| ||||
Sbjct: 528 ggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaag 469
Query: 275 ccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatc 334
|||||||||| ||||||||||| || |||||| |||||||||| || ||||| ||||| |
Sbjct: 468 ccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgacc 409
Query: 335 gggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgct 394
| ||||| |||||||| || |||||||||| || || |||||||||||||| |||||||
Sbjct: 408 gtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgct 349
Query: 395 cgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtg 454
|||| || ||||||||||||||||| ||||| |||||||||||||| || ||||| || |
Sbjct: 348 cgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgag 289
Query: 455 agcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatct 514
|||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| |
Sbjct: 288 agctcggagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacat 229
Query: 515 ctgatgagccgtggggatggtac 537
|||||| ||||||||||||||||
Sbjct: 228 ctgatgcgccgtggggatggtac 206
>gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_M14 5', mRNA sequence
Length = 482
Score = 424 bits (214), Expect = e-117
Identities = 415/482 (86%)
Strand = Plus / Plus
Query: 48 gccagttgttagtgaaggacagtatgagaagattaaaaagttcatatcgaatgccaaaag 107
||||||||||||||||||||||||||||||||| || ||||| || ||||||| ||||
Sbjct: 1 gccagttgttagtgaaggacagtatgagaagatcaagaagtttgtagcgaatgctaaaac 60
Query: 108 ccaaggtgctactattctgactggaggtgttagacctgcgcatcttgagaaggggttctt 167
||||||| || ||||| ||||| ||||| || || |||||| ||||| || |||||
Sbjct: 61 tgaaggtgcgaccattctcactgggggtgtcaggcccaagcatctggagaaaggtttctt 120
Query: 168 tattgaaccaactattattactgatatcaccacatcaatggaaatctggagggaggaagt 227
|||||||| || || || ||||| |||| |||||||||||| || ||||||||||||||
Sbjct: 121 cattgaacccacaatcatcactgacatcaacacatcaatggagatttggagggaggaagt 180
Query: 228 ctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgc 287
|||||||||||||||||| || || |||||| || ||||| |||||||||||||| ||
Sbjct: 181 ctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggc 240
Query: 288 caacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgcca 347
||||||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||
Sbjct: 241 caacgatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgcca 300
Query: 348 gaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgctt 407
||| |||||||||||||| || || |||||||||||||| ||||||||||| || |||||
Sbjct: 301 gagattatctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgctt 360
Query: 408 ctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagg 467
|||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 361 ctgccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaagg 420
Query: 468 gggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtg 527
|||||||||||||||||||||| ||||||| || |||||||||| ||||||| ||||||
Sbjct: 421 gggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtg 480
Query: 528 gg 529
||
Sbjct: 481 gg 482
>gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. vulgare cDNA clone HB30O13
5-PRIME, mRNA sequence
Length = 474
Score = 385 bits (194), Expect = e-105
Identities = 392/458 (85%)
Strand = Plus / Plus
Query: 54 tgttagtgaaggacagtatgagaagattaaaaagttcatatcgaatgccaaaagccaagg 113
||||||||||||||||||||||||||| || |||||| || ||||||| |||| ||||
Sbjct: 11 tgttagtgaaggacagtatgagaagatcaagaagttcgtagcgaatgctaaaactgaagg 70
Query: 114 tgctactattctgactggaggtgttagacctgcgcatcttgagaaggggttctttattga 173
||| || ||||| ||||| ||||| || || |||||| ||||| || ||||| |||||
Sbjct: 71 tgcgaccattctcactgggggtgtcaggcccaagcatctggagaaaggtttcttcattga 130
Query: 174 accaactattattactgatatcaccacatcaatggaaatctggagggaggaagtctttgg 233
||| || || || ||||| |||| |||||||||||| || ||||||||||||||||||||
Sbjct: 131 acccacaatcatcactgacatcaacacatcaatggagatttggagggaggaagtctttgg 190
Query: 234 tccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgccaacga 293
|||||||||||| || || |||||| || ||||| |||||||||||||| ||||||||
Sbjct: 191 tccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggccaacga 250
Query: 294 tacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggtt 353
||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||||| ||
Sbjct: 251 tactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgccagagatt 310
Query: 354 atctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgcca 413
|||||||||| || || |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 311 ggctgaggagatcgaggcgggatgcatctgggtgaactgctcgcagccttgcttctgcca 370
Query: 414 agctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcat 473
|||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 371 agctccgtggggtgggaacaagcgcagcggctttgggcgagagctcggagaagggggcat 430
Query: 474 tgataactacctgagcgtcaagcaagtcacggagtaca 511
|||||||||||||||| ||||||| || ||||||||||
Sbjct: 431 tgataactacctgagcatcaagcaggtgacggagtaca 468
>gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12p17 3', mRNA sequence
Length = 705
Score = 367 bits (185), Expect = e-100
Identities = 386/453 (85%)
Strand = Plus / Minus
Query: 85 aagttcatatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacct 144
|||||| || ||||||| |||| ||||||| || ||||| ||||| ||||| || ||
Sbjct: 699 aagttcgtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggccc 640
Query: 145 gcgcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatca 204
|||||| ||||| || ||||| |||||||| || || || ||||| |||| |||||||
Sbjct: 639 aagcatctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatca 580
Query: 205 atggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcact 264
||||| || |||||||||||||||||||||||||||||||| || || |||||| ||
Sbjct: 579 atggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctacc 520
Query: 265 gaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatt 324
||||| |||||||||||||| ||||||||||| || |||||| |||||||||| || |||
Sbjct: 519 gaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatt 460
Query: 325 tctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgg 384
|| ||||| || ||||| |||||||| || |||||||||| || || ||||||||||||
Sbjct: 459 tccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgg 400
Query: 385 gtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtgga 444
|| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 399 gtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggc 340
Query: 445 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 504
||||| || ||||| |||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 339 tttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacg 280
Query: 505 gagtacatctctgatgagccgtggggatggtac 537
||||||| ||||||| ||||||||||||||||
Sbjct: 279 gagtacacatctgatgcgccgtggggatggtac 247
>gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_K04 5', mRNA sequence
Length = 458
Score = 363 bits (183), Expect = 5e-099
Identities = 339/391 (86%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || ||||| |||||||| || || || ||||| |||| |||||||||
Sbjct: 12 gcatctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaat 71
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
||| || |||||||||||||||||||||||||||||||| || || |||||| || ||
Sbjct: 72 ggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccga 131
Query: 267 agatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
||| |||||||||||||| ||||||||||| || |||||| |||||||||| || |||||
Sbjct: 132 agaggaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttc 191
Query: 327 tggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggt 386
||||| || ||||| |||||||| ||| |||||||||| || || ||||||||||||||
Sbjct: 192 cggtgaccgtgagcgatgccagagattagctgaggagatcgaagcgggatgcatctgggt 251
Query: 387 aaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatt 446
||||||||||| || ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 252 gaactgctcgcagccttgcttctgccaagctccgtggggcgggaacaagcgcagcggctt 311
Query: 447 tggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgga 506
||| || ||||| |||||| ||||||||||||||||||||||| ||||||| || |||||
Sbjct: 312 tgggcgagagctcggagaaaggggcattgataactacctgagcatcaagcaggtgacgga 371
Query: 507 gtacatctctgatgagccgtggggatggtac 537
||||| ||||||| ||||||||| ||||||
Sbjct: 372 gtacacatctgatgcgccgtgggggtggtac 402
>gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. vulgare cDNA clone HF11M21
5-PRIME, mRNA sequence
Length = 581
Score = 363 bits (183), Expect = 5e-099
Identities = 339/391 (86%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || ||||| |||||||| || || || ||||| |||| |||||||||
Sbjct: 38 gcatctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaat 97
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
||| || |||||||||||||||||||||||||||||||| || || |||||| || ||
Sbjct: 98 ggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccga 157
Query: 267 agatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
||| |||||||||||||| ||||||||||| || |||||| |||||||||| || |||||
Sbjct: 158 agaggaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttc 217
Query: 327 tggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggt 386
||||| || ||||| |||||||| || |||||||||| || || ||||||||||||||
Sbjct: 218 cggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggt 277
Query: 387 aaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatt 446
||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct: 278 gaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctt 337
Query: 447 tggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgga 506
||| || ||||| |||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 338 tgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacgga 397
Query: 507 gtacatctctgatgagccgtggggatggtac 537
||||| ||||||| ||||||||||||||||
Sbjct: 398 gtacacatctgatgcgccgtggggatggtac 428
>gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_K14 5', mRNA sequence
Length = 510
Score = 361 bits (182), Expect = 2e-098
Identities = 308/350 (88%)
Strand = Plus / Plus
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 1 ctgacatcaacacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtg 60
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| || |||||| || ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 61 tgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactcattatggtc 120
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||| || ||||| ||||| || ||||| |||||||| |||||||||||||| |
Sbjct: 121 tggctggtgccgtgatttccggtgaccgtgagcgatgccagagattatctgaggagatcg 180
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 181 aagcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcg 240
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 241 ggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctga 300
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
|| ||||||| || |||||||||| ||||||| ||||||||| ||||||
Sbjct: 301 gcatcaagcaggtgacggagtacacatctgatgcgccgtgggggtggtac 350
>gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26h04 3', mRNA sequence
Length = 606
Score = 355 bits (179), Expect = 1e-096
Identities = 326/375 (86%)
Strand = Plus / Minus
Query: 163 ttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggagggag 222
||||| |||||||| || || || ||||| |||| |||||||||||| || |||||||||
Sbjct: 606 ttcttcattgaacccacaatcatcactgacatcaacacatcaatggagatttggagggag 547
Query: 223 gaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaa 282
||||||||||||||||||||||| || || |||||| || ||||| ||||||||||||
Sbjct: 546 gaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaa 487
Query: 283 cttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgt 342
|| ||||||||||| || |||||| |||||||||| || ||||| ||||| || |||||
Sbjct: 486 ctggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcga 427
Query: 343 tgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccc 402
|||||||| || |||||||||| || || |||||||||||||| ||||||||||| ||
Sbjct: 426 tgccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgctcgcagcct 367
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
||||||||||||||||| ||||| |||||||||||||| || ||||| || ||||| |||
Sbjct: 366 tgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgagagctcgga 307
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |
Sbjct: 306 gaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcg 247
Query: 523 ccgtggggatggtac 537
|||||||||||||||
Sbjct: 246 ccgtggggatggtac 232
>gb|BU990251.1|BU990251 HF24I09r HF Hordeum vulgare subsp. vulgare cDNA clone HF24I09
5-PRIME, mRNA sequence
Length = 599
Score = 353 bits (178), Expect = 5e-096
Identities = 352/410 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 184 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 243
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 244 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 303
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 304 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 363
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 364 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 423
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 424 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 483
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| || |||||||||| || || |||||||||||||| |||
Sbjct: 484 gaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaac 543
Query: 391 tgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcag 440
|||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 544 tgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcag 593
>gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25o04 3', mRNA sequence
Length = 575
Score = 351 bits (177), Expect = 2e-095
Identities = 324/374 (86%)
Strand = Plus / Minus
Query: 164 tctttattgaaccaactattattactgatatcaccacatcaatggaaatctggagggagg 223
|||| |||||||| || || || ||||| |||| |||||||||||| || ||||||||||
Sbjct: 575 tcttcattgaacccacaatcatcactgacatcaacacatcaatgganatttggagggagg 516
Query: 224 aagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaac 283
|||||||||||||||||||||| || || |||||| || ||||| |||||||||||||
Sbjct: 515 aagtctttggtccagtcctgtgtgtgaaggaattttctacngaagaggaagccatcgaac 456
Query: 284 ttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgtt 343
| ||||||||||| || |||||| |||||||||| || ||||| ||||| || ||||| |
Sbjct: 455 tggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgat 396
Query: 344 gccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccct 403
||||||| || |||||||||| || || |||||||||||||| ||||||||||| || |
Sbjct: 395 gccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgctcgcagcctt 336
Query: 404 gcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggag 463
|||||||||||||||| ||||| |||||||||||||| || ||||| || ||||| ||||
Sbjct: 335 gcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgagagctcggag 276
Query: 464 aagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagc 523
|||||||||||||||||||| ||||| ||||||| || |||||||||| ||||||| ||
Sbjct: 275 aagggggcattgataactacntgagcatcaagcaggtgacggagtacacatctgatgcgc 216
Query: 524 cgtggggatggtac 537
||||||||||||||
Sbjct: 215 cgtggggatggtac 202
>gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. vulgare cDNA clone HU04E06
3-PRIME, mRNA sequence
Length = 571
Score = 347 bits (175), Expect = 3e-094
Identities = 307/351 (87%)
Strand = Plus / Minus
Query: 187 actgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgc 246
||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 565 actgacatcaacacatcaatggagatttggagggaggaagtctttggtccagtcctgtgt 506
Query: 247 gttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggt 306
|| || |||||| || ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 505 gtgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactcattatggt 446
Query: 307 ttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagatt 366
|||||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||
Sbjct: 445 ctggctggtgccgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatc 386
Query: 367 gacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggc 426
|| || |||||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 385 gaggcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggt 326
Query: 427 gggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctg 486
|||||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 325 gggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctg 266
Query: 487 agcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
||| ||||||| || |||||||||| ||||||| ||||||||||||||||
Sbjct: 265 agcatcaagcaggtgacggagtacacatctgatgcgccgtggggatggtac 215
>gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C16
5-PRIME, mRNA sequence
Length = 491
Score = 347 bits (175), Expect = 3e-094
Identities = 307/351 (87%)
Strand = Plus / Plus
Query: 187 actgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgc 246
||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 12 actgacatcaacacatcaatggagatttggagggaggaagtctttggtccagtcctgtgt 71
Query: 247 gttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggt 306
|| || |||||| || ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 72 gtgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactcattatggt 131
Query: 307 ttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagatt 366
|||||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||
Sbjct: 132 ctggctggtgccgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatc 191
Query: 367 gacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggc 426
|| || |||||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 192 gaggcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggt 251
Query: 427 gggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctg 486
|||||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 252 gggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctg 311
Query: 487 agcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
||| ||||||| || |||||||||| ||||||| ||||||||||||||||
Sbjct: 312 agcatcaagcaggtgacggagtacacatctgatgcgccgtggggatggtac 362
>gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P19
3-PRIME, mRNA sequence
Length = 535
Score = 345 bits (174), Expect = 1e-093
Identities = 306/350 (87%)
Strand = Plus / Minus
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 512 ctgacatcaacacatcaatggagatttggagggaggaagtctttggtccagtcctgtgtg 453
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| || |||||| || ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 452 tgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactcattatggtc 393
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||| || ||||| ||||| || ||||| |||||||| || |||||||||| |
Sbjct: 392 tggctggtgccgtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcg 333
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct: 332 aggcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtg 273
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 272 ggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctga 213
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
|| ||||||| || |||||||||| ||||||| ||||||||||||||||
Sbjct: 212 gcatcaagcaggtgacggagtacacatctgatgcgccgtggggatggtac 163
>gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. vulgare cDNA clone HM09D03
3-PRIME, mRNA sequence
Length = 574
Score = 339 bits (171), Expect = 7e-092
Identities = 297/339 (87%)
Strand = Plus / Minus
Query: 199 acatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaattt 258
||||||||||| || |||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 574 acatcaatggagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattt 515
Query: 259 agcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgct 318
|| ||||| |||||||||||||| ||||||||||| || |||||| ||||||||||
Sbjct: 514 tctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgcc 455
Query: 319 gtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgc 378
|| ||||| ||||| || ||||| |||||||| || |||||||||| || || ||||||
Sbjct: 454 gtgatttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgc 395
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct: 394 atctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgc 335
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
|| || ||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 334 agcggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcag 275
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtac 537
|| |||||||||| ||||||| ||||||||||||||||
Sbjct: 274 gtgacggagtacacatctgatgcgccgtggggatggtac 236
>gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare leaves vegetative stage Hordeum vulgare subsp.
vulgare cDNA clone baak1n06, mRNA sequence
Length = 674
Score = 335 bits (169), Expect = 1e-090
Identities = 319/369 (86%)
Strand = Plus / Minus
Query: 169 attgaaccaactattattactgatatcaccacatcaatggaaatctggagggaggaagtc 228
|||||||| || || || ||||| |||| |||||||||||| || ||| |||||||||||
Sbjct: 670 attgaacccacaatcatcactgacatcaacacatcaatggagatttggcgggaggaagtc 611
Query: 229 tttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgcc 288
||||||||||||||||| || || |||||| || ||||| |||||||||||||| |||
Sbjct: 610 tttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggcc 551
Query: 289 aacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccag 348
|||||||| || |||||| |||||||||| || ||||| ||||| | ||||| ||||||
Sbjct: 550 aacgatactcattatggtctggctggtgccgtgatttccggtgacagtgagcgatgccag 491
Query: 349 aggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttc 408
|| ||| |||||||||| || || |||||||||||||| ||||||||||| || ||||||
Sbjct: 490 agattagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgcttc 431
Query: 409 tgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaaggg 468
||||||||||| |||||||||||||||||||| || ||||| || ||||| |||||||||
Sbjct: 430 tgccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaaggg 371
Query: 469 ggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtgg 528
||||||||||||||||||||| ||||||| || |||||||||| ||||||| ||| |||
Sbjct: 370 ggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccctgg 311
Query: 529 ggatggtac 537
|| ||||||
Sbjct: 310 gggtggtac 302
>gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL53f12 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 587
Score = 329 bits (166), Expect = 7e-089
Identities = 304/350 (86%)
Strand = Plus / Minus
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||| |||| |||||||||||| || ||| |||||||||||||||||||||||||||| |
Sbjct: 531 ctgacatcaacacatcaatggagatttggcgggaggaagtctttggtccagtcctgtgtg 472
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| || |||||| || ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 471 tgaaggaattttctaccgaagaggaagccatcgaactggccaacgatactcattatggtc 412
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||| || ||||| ||||| | ||||| |||||||| ||| |||||||||| |
Sbjct: 411 tggctggtgccgtgatttccggtgacagtgagcgatgccagagattagctgaggagatcg 352
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 351 aagcgggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcg 292
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 291 ggaacaagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctga 232
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
|| ||||||| || |||||||||| ||||||| ||| ||||| ||||||
Sbjct: 231 gcatcaagcaggtgacggagtacacatctgatgcgccctgggggtggtac 182
>gb|BU984894.1|BU984894 HF05G21r HF Hordeum vulgare subsp. vulgare cDNA clone HF05G21
5-PRIME, mRNA sequence
Length = 576
Score = 325 bits (164), Expect = 1e-087
Identities = 332/388 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 189 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 248
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 249 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 308
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 309 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 368
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 369 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 428
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 429 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 488
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| || |||||||||| || || |||||||||||||| |||
Sbjct: 489 gaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaac 548
Query: 391 tgctcgcaaccctgcttctgccaagctc 418
|||||||| || ||||||||||||||||
Sbjct: 549 tgctcgcagccttgcttctgccaagctc 576
>gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02G16u 3',
mRNA sequence
Length = 648
Score = 317 bits (160), Expect = 3e-085
Identities = 300/344 (87%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 196 accacatcaatggaaatctggagggaggaagtctttggtcc-agtcctgtgcgttaaaga 254
|||||||||||||| || ||||||||||||||||||||||| ||||||||| || || ||
Sbjct: 504 accacatcaatggagatttggagggaggaagtctttggtcccagtcctgtgtgtgaagga 445
Query: 255 atttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctgg 314
|||| || ||||| |||||||||||||| ||||||||||| || |||||| |||||||
Sbjct: 444 attttctaccgaagaggaagccatcgaactggccaacgatactcattatggtctggctgg 385
Query: 315 tgctgtaatttct-ggtgatcgggagcgttgccagaggttatctgaggagattgacgctg 373
||| || ||||| ||||| || ||||| |||||||| || |||||||||| || || |
Sbjct: 384 tgccgtgatttcccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgg 325
Query: 374 gatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaaca 433
||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct: 324 gatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaaca 265
Query: 434 agcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtca 493
||||||| || ||||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 264 agcgcagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatca 205
Query: 494 agcaagtcacggagtacatctctgatgagccgtggggatggtac 537
|||| || |||||||||| ||||||| ||||||||||||||||
Sbjct: 204 agcaggtgacggagtacacatctgatgcgccgtggggatggtac 161
>gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27l03 5', mRNA sequence
Length = 667
Score = 315 bits (159), Expect = 1e-084
Identities = 279/319 (87%)
Strand = Plus / Plus
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccat 278
||||||||||||||||||||||||||| || || |||||| || ||||| ||||||||
Sbjct: 10 ggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccat 69
Query: 279 cgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcggga 338
|||||| ||||||||||| || |||||| |||||||||| || ||||| ||||| || ||
Sbjct: 70 cgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtga 129
Query: 339 gcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgca 398
||| |||||||| || |||||||||| || || |||||||||||||| |||||||||||
Sbjct: 130 gcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaactgctcgca 189
Query: 399 accctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagct 458
|| ||||||||||||||||| ||||| |||||||||||||| || ||||| || |||||
Sbjct: 190 gccttgcttctgccaagctccgtggggtgggaacaagcgcagcggctttgggcgagagct 249
Query: 459 tggagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctga 518
|||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||
Sbjct: 250 cggagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctga 309
Query: 519 tgagccgtggggatggtac 537
|| ||||||||||||||||
Sbjct: 310 tgcgccgtggggatggtac 328
>gb|BJ472041.1|BJ472041 BJ472041 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k21 5', mRNA sequence
Length = 387
Score = 309 bits (156), Expect = 6e-083
Identities = 326/383 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 5 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 64
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 65 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 124
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 125 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 184
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 185 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 244
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||||||||| ||||||||||| || |||||| |||||||||| | ||||| |||
Sbjct: 245 gaagccatcgaactggccaacgatactcattatggtctggctggtgccgngatttccggt 304
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| |||||||| || |||||||||| || || |||||||||||||| |||
Sbjct: 305 gaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaac 364
Query: 391 tgctcgcaaccctgcttctgcca 413
|||||||| || |||||||||||
Sbjct: 365 tgctcgcagccttgcttctgcca 387
>gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_A18 5', mRNA sequence
Length = 486
Score = 305 bits (154), Expect = 1e-081
Identities = 271/310 (87%)
Strand = Plus / Plus
Query: 228 ctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgc 287
|||||||||||||||||| || || |||||| || ||||| |||||||||||||| ||
Sbjct: 1 ctttggtccagtcctgtgtgtgaaggaattttctaccgaagaggaagccatcgaactggc 60
Query: 288 caacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgcca 347
||||||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||
Sbjct: 61 caacgatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgcca 120
Query: 348 gaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgctt 407
||| ||| |||||||||| || || |||||||||||||| ||||||||||| || |||||
Sbjct: 121 gagattagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgctt 180
Query: 408 ctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagg 467
|||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 181 ctgccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaagg 240
Query: 468 gggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtg 527
|||||||||||||||||||||| ||||||| || |||||||||| ||||||| ||||||
Sbjct: 241 gggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtg 300
Query: 528 gggatggtac 537
||| ||||||
Sbjct: 301 ggggtggtac 310
>gb|BG299265.1|BG299265 HVSMEa0019A19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019A19f, mRNA sequence
Length = 648
Score = 301 bits (152), Expect = 2e-080
Identities = 415/500 (83%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 29 aagagggttgcaggcttgg-gccagttgttagtgaaggacagtatgagaagattaaaaag 87
||||| ||||||||||||| |||| ||||||||||| |||| ||||||||||| || | |
Sbjct: 29 aagagagttgcaggcttggagcca-ttgttagtgaatgacaatatgagaagatcaagacg 87
Query: 88 ttcatatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcg 147
|| || ||||||| |||| ||||||| || ||||| ||||| ||||| || || |
Sbjct: 88 tttgtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaag 147
Query: 148 catcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatg 207
||||| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||
Sbjct: 148 catctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatg 207
Query: 208 gaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaa 267
|| || |||||||||||||||||||||||||||||||| || || |||||| || |||
Sbjct: 208 gagatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaa 267
Query: 268 gatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttct 327
|| ||||||||| |||| ||||||||||| || |||||| |||||||||| || |||||
Sbjct: 268 gaggaagccatcaaactggccaacgatactcattatggtctggctggtgccgtgatttcc 327
Query: 328 ggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggta 387
||||| || ||||| |||||||| ||| |||| ||||| || || |||||||| |||||
Sbjct: 328 ggtgaccgtgagcgatgccagagattaactgaagagatcgaagcgggatgcatgtgggtg 387
Query: 388 aactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggattt 447
|||||||| || || ||||||||||| |||| ||||||||||||||||||| || |||
Sbjct: 388 aactgctcacagccttgcttctgccacactccgtggggcgggaacaagcgcatcggcttt 447
Query: 448 ggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggag 507
| || ||||| |||||||| ||||| ||||||||||||||| |||||||||| || |||
Sbjct: 448 cggcgagagctcggagaaggcggcatcgataactacctgagcatcaagcaagtgactgag 507
Query: 508 tacatctctgatgagccgtg 527
| || ||||||| ||||||
Sbjct: 508 tgcacatctgatgcgccgtg 527
>gb|BJ470674.1|BJ470674 BJ470674 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25o04 5', mRNA sequence
Length = 426
Score = 295 bits (149), Expect = 1e-078
Identities = 324/381 (85%), Gaps = 1/381 (0%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaa-aagtt 89
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 46 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaaggaagtt 105
Query: 90 catatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgca 149
| || ||||||| |||| ||||||| || ||||| ||||| ||||| || || |||
Sbjct: 106 cgtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagca 165
Query: 150 tcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatgga 209
||| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 166 tctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatgga 225
Query: 210 aatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaaga 269
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 226 gatttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaaga 285
Query: 270 tgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctgg 329
|||||||||||||| ||||||||||| || |||||| |||||||||| || ||||| ||
Sbjct: 286 ggaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatttccgg 345
Query: 330 tgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaa 389
||| || ||||| |||||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 346 tgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgggtgaa 405
Query: 390 ctgctcgcaaccctgcttctg 410
||||||||| || ||||||||
Sbjct: 406 ctgctcgcagccttgcttctg 426
>gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93g5 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 699
Score = 295 bits (149), Expect = 1e-078
Identities = 296/345 (85%)
Strand = Plus / Minus
Query: 193 atcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaa 252
|||| |||||||||||| || || |||||||||||||||||||||||||||| || ||
Sbjct: 547 atcaacacatcaatggagatttgccgggaggaagtctttggtccagtcctgtgtgtaaag 488
Query: 253 gaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggct 312
|||||| || ||||| |||||||||||||| |||||||||| || |||||| |||||
Sbjct: 487 gaattttctaccgaagaggaagccatcgaactgcccaacgatactcattatggtctggct 428
Query: 313 ggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgct 372
||||| || ||||| ||||| | ||||| |||||||| ||| |||||||||| || ||
Sbjct: 427 ggtgccgtgatttccggtgacagtgagcgatgccagagattagctgaggagatcgaagcg 368
Query: 373 ggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaac 432
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 367 ggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaac 308
Query: 433 aagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtc 492
||||||| || ||||| || ||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 307 aagcgcaacggctttgggcgagagctcggaaaagggggcattgataactacctgagcatc 248
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
||||| || |||||||||| ||||||| ||| ||||| ||||||
Sbjct: 247 aagcaggtgacggagtacacatctgatgcgccctgggggtggtac 203
>gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22C24
5-PRIME, mRNA sequence
Length = 474
Score = 280 bits (141), Expect = 6e-074
Identities = 240/273 (87%)
Strand = Plus / Plus
Query: 265 gaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatt 324
||||| |||||||||||||| ||||||||||| || |||||| |||||||||| || |||
Sbjct: 36 gaagaggaagccatcgaactggccaacgatactcattatggtctggctggtgccgtgatt 95
Query: 325 tctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgg 384
|| ||||| || ||||| |||||||| || |||||||||| || || ||||||||||||
Sbjct: 96 tccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatctgg 155
Query: 385 gtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtgga 444
|| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 156 gtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagcggc 215
Query: 445 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 504
||||| || ||||| |||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 216 tttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtgacg 275
Query: 505 gagtacatctctgatgagccgtggggatggtac 537
||||||| ||||||| ||||||||||||||||
Sbjct: 276 gagtacacatctgatgcgccgtggggatggtac 308
>gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J06 5', mRNA sequence
Length = 413
Score = 252 bits (127), Expect = 1e-065
Identities = 217/247 (87%)
Strand = Plus / Plus
Query: 291 cgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagag 350
|||||| || |||||| |||||||||| || ||||| ||||| || ||||| ||||||||
Sbjct: 1 cgatactcattatggtctggctggtgccgtgatttccggtgaccgtgagcgatgccagag 60
Query: 351 gttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctg 410
||| |||||||||| || || |||||||||||||| ||||||||||| || ||||||||
Sbjct: 61 attagctgaggagatcgaagcgggatgcatctgggtgaactgctcgcagccttgcttctg 120
Query: 411 ccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaaggggg 470
||||||||| |||||||||||||||||||| || ||||| || ||||| |||||||||||
Sbjct: 121 ccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcggagaaggggg 180
Query: 471 cattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtgggg 530
||||||||||||||||||| ||||||| || |||||||||| ||||||| |||||||||
Sbjct: 181 cattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccgtgggg 240
Query: 531 atggtac 537
||||||
Sbjct: 241 gtggtac 247
>gb|BE060881.2|BE060881 HVSMEg0013L09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013L09f, mRNA sequence
Length = 696
Score = 250 bits (126), Expect = 5e-065
Identities = 303/362 (83%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 43 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttt 102
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 103 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 162
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 163 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatggag 222
Query: 211 atctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagat 270
|| |||||||||||||||||||||||||||||||| || || |||||| || |||||
Sbjct: 223 atttggagggaggaagtctttggtccagtcctgtgtgtgaaggaattttctaccgaagag 282
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggt 330
|||||||| ||||| ||||||||||| || |||||| |||||||||| || ||||| |||
Sbjct: 283 gaagccattgaactggccaacgatactcattatggtctggctggtgccgtgatttccggt 342
Query: 331 gatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaac 390
|| || ||||| ||||| || || |||||||||| || | |||||||| ||||| |||
Sbjct: 343 gaccgtgagcgatgccacagatttactgaggagatcgaatcgggatgcatttgggtgaac 402
Query: 391 tg 392
||
Sbjct: 403 tg 404
>gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL96d4 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 593
Score = 230 bits (116), Expect = 5e-059
Identities = 215/248 (86%)
Strand = Plus / Minus
Query: 290 acgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccaga 349
||||||| || ||||||||||||||||| || ||||| ||||| | ||||| |||||||
Sbjct: 495 acgatactcattatggtttggctggtgccgtgatttccggtgacagtgagcgatgccaga 436
Query: 350 ggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttct 409
| ||| || ||||||| | || |||||||||||||| |||||||||||||| |||||||
Sbjct: 435 gattagcttaggagatccaagcgggatgcatctgggtgaactgctcgcaaccttgcttct 376
Query: 410 gccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggg 469
|||||||||| ||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct: 375 gccaagctccgtggggcgggaacaagcgcaacggctttgggcgagagctcggagaagggg 316
Query: 470 gcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggg 529
|||||||||||||||||||| ||||||| || |||||||||| ||||||| ||| ||||
Sbjct: 315 gcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgccctggg 256
Query: 530 gatggtac 537
| ||||||
Sbjct: 255 ggtggtac 248
>gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
5-PRIME, mRNA sequence
Length = 454
Score = 222 bits (112), Expect = 1e-056
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 322 atttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatc 381
||||| ||||| || ||||| |||||||| || |||||||||| || || |||||||||
Sbjct: 16 atttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatc 75
Query: 382 tgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagt 441
||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 76 tgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagc 135
Query: 442 ggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtc 501
|| ||||| || ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 136 ggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtg 195
Query: 502 acggagtacatctctgatgagccgtggggatggtac 537
|||||||||| ||||||| ||||||||||||||||
Sbjct: 196 acggagtacacatctgatgcgccgtggggatggtac 231
>gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
3-PRIME, mRNA sequence
Length = 463
Score = 222 bits (112), Expect = 1e-056
Identities = 190/216 (87%)
Strand = Plus / Minus
Query: 322 atttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatc 381
||||| ||||| || ||||| |||||||| || |||||||||| || || |||||||||
Sbjct: 450 atttccggtgaccgtgagcgatgccagagattggctgaggagatcgaggcgggatgcatc 391
Query: 382 tgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagt 441
||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 390 tgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaacaagcgcagc 331
Query: 442 ggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtc 501
|| ||||| || ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 330 ggctttgggcgagagctcggagaagggggcattgataactacctgagcatcaagcaggtg 271
Query: 502 acggagtacatctctgatgagccgtggggatggtac 537
|||||||||| ||||||| ||||||||||||||||
Sbjct: 270 acggagtacacatctgatgcgccgtggggatggtac 235
>gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008M13f, mRNA sequence
Length = 699
Score = 212 bits (107), Expect = 1e-053
Identities = 173/195 (88%)
Strand = Plus / Plus
Query: 343 tgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccc 402
|||||||| ||| |||| ||||| || || |||||||||||||| ||||||||||| ||
Sbjct: 4 tgccagagattagctgaagagatcgaagcgggatgcatctgggtgaactgctcgcagcct 63
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
||||||||||||||||| |||||||||||||||||||| || ||||| || ||||| |||
Sbjct: 64 tgcttctgccaagctccgtggggcgggaacaagcgcagcggctttgggcgagagctcgga 123
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |
Sbjct: 124 gaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcg 183
Query: 523 ccgtggggatggtac 537
|||||||| ||||||
Sbjct: 184 ccgtgggggtggtac 198
>gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. vulgare cDNA clone HU02A14
3-PRIME, mRNA sequence
Length = 400
Score = 184 bits (93), Expect = 2e-045
Identities = 147/165 (89%)
Strand = Plus / Minus
Query: 373 ggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaac 432
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 388 ggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggtgggaac 329
Query: 433 aagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtc 492
|||||||| || ||||| || ||||| |||||||||||||||||||||||||||||| ||
Sbjct: 328 aagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatc 269
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
||||| || |||||||||| | ||||| |||||||||||||||
Sbjct: 268 aagcaggtgacggagtacacatttgatgccccgtggggatggtac 224
>gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02M15T 5', mRNA sequence
Length = 700
Score = 178 bits (90), Expect = 2e-043
Identities = 184/214 (85%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 390 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 449
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 450 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 509
Query: 151 cttgagaaggggttctttattgaaccaactattattac-tgatatcaccacatcaatgga 209
|| ||||| || ||||| |||||||| || || || || ||| |||| ||||||||||||
Sbjct: 510 ctggagaaaggtttcttcattgaacccacaatcatcacttgacatcaacacatcaatgga 569
Query: 210 aatctggagggaggaagtctttggtccagtcctg 243
|| ||||||||||||||||||||||||||||||
Sbjct: 570 gatttggagggaggaagtctttggtccagtcctg 603
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 271 gaagccatcgaacttgccaacgatacacagtatggtttggctggtg 316
|||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct: 635 gaagccatcgaactggccaacgatactcattatggtctggctggtg 680
>gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006H06f, mRNA sequence
Length = 832
Score = 172 bits (87), Expect = 1e-041
Identities = 180/211 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 254 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttt 313
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 314 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 373
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatggaa 210
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 374 ctggagaaaggtttcttcattgaacctacgatcatcactgacatcaacacatcaatggag 433
Query: 211 atctggagggaggaagtctttggtccagtcc 241
|| ||||||||||||| ||||||||||||||
Sbjct: 434 atttggagggaggaagactttggtccagtcc 464
>gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_B21 5', mRNA sequence
Length = 127
Score = 167 bits (84), Expect = 6e-040
Identities = 114/124 (91%)
Strand = Plus / Plus
Query: 373 ggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaac 432
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 4 ggatgcatctgggtgaactgctcgcagccttgcttctgccaagctccgtggggcgggaac 63
Query: 433 aagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtc 492
|||||||| || ||||| || ||||| |||||||||||||||||||||||||||||| ||
Sbjct: 64 aagcgcagcggctttgggcgagagctcggagaagggggcattgataactacctgagcatc 123
Query: 493 aagc 496
||||
Sbjct: 124 aagc 127
>gb|BM370947.2|BM370947 EBro04_SQ003_A05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_A05 5', mRNA sequence
Length = 156
Score = 159 bits (80), Expect = 1e-037
Identities = 137/156 (87%)
Strand = Plus / Plus
Query: 278 tcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcggg 337
||||||| ||||||||||| || |||||| |||||||||| || ||||| ||||| || |
Sbjct: 1 tcgaactggccaacgatactcattatggtctggctggtgccgtgatttccggtgaccgtg 60
Query: 338 agcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgc 397
|||| |||||||| ||| |||||||||| || || |||||||||||||| ||||||||||
Sbjct: 61 agcgatgccagagattagctgaggagatcgaagcgggatgcatctgggtgaactgctcgc 120
Query: 398 aaccctgcttctgccaagctccctggggcgggaaca 433
| || ||||||||||||||||| |||||||||||||
Sbjct: 121 agccttgcttctgccaagctccgtggggcgggaaca 156
>gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10B24
3-PRIME, mRNA sequence
Length = 347
Score = 153 bits (77), Expect = 9e-036
Identities = 119/133 (89%)
Strand = Plus / Minus
Query: 405 cttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggaga 464
||||||||||||||| ||||| |||||||||| ||| || ||||| || ||||| |||||
Sbjct: 347 cttctgccaagctccgtggggtgggaacaagcacagcggctttgggcgagagctcggaga 288
Query: 465 agggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagcc 524
||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |||
Sbjct: 287 agggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatgcgcc 228
Query: 525 gtggggatggtac 537
|||||||||||||
Sbjct: 227 gtggggatggtac 215
>gb|BJ463472.1|BJ463472 BJ463472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a22 5', mRNA sequence
Length = 644
Score = 141 bits (71), Expect = 3e-032
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 466 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 525
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 526 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 585
Query: 151 cttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatgga 209
|| ||||| || ||||| |||||||| || || || ||||| |||| ||||||||||||
Sbjct: 586 ctggagaaaggtttcttcattgaacccacaatcatcactgacatcaacacatcaatgga 644
>gb|BU995094.1|BU995094 HM09D03r HM Hordeum vulgare subsp. vulgare cDNA clone HM09D03
5-PRIME, mRNA sequence
Length = 514
Score = 123 bits (62), Expect = 8e-027
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 345 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 404
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgcat 150
|| ||||||| |||| ||||||| || ||||| ||||| ||||| || || ||||
Sbjct: 405 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtgtcaggcccaagcat 464
Query: 151 cttgagaaggggttctttattgaacc 176
|| ||||| || ||||| ||||||||
Sbjct: 465 ctggagaaaggtttcttcattgaacc 490
>gb|BM100769.1|BM100769 EBpi01_SQ001_M01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ001_M01 5', mRNA sequence
Length = 329
Score = 113 bits (57), Expect = 8e-024
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 425 gcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacc 484
|||||||||||||||| || | || || ||||| |||||||||||||||||||||||||
Sbjct: 1 gcgggaacaagcgcagcggctgggggcgagagctcggagaagggggcattgataactacc 60
Query: 485 tgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtac 537
||||| ||||||| || |||||||||| ||||||| ||||||||| ||||||
Sbjct: 61 tgagcatcaagcaggtgacggagtacacatctgatgcgccgtgggggtggtac 113
>gb|BU984384.1|BU984384 HF03M12r HF Hordeum vulgare subsp. vulgare cDNA clone HF03M12
5-PRIME, mRNA sequence
Length = 558
Score = 111 bits (56), Expect = 3e-023
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 463 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttc 522
Query: 91 atatcgaatgccaaaa 106
|| ||||||| ||||
Sbjct: 523 gtagcgaatgctaaaa 538
>gb|BQ766358.1|BQ766358 EBro08_SQ005_C20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C20 5', mRNA sequence
Length = 642
Score = 107 bits (54), Expect = 5e-022
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 537 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagatcaagaagttt 596
Query: 91 atatcgaatgccaaaagccaaggtgctactattctgactggaggtg 136
|| ||||||| |||| ||||||| || ||||| ||||| ||||
Sbjct: 597 gtagcgaatgctaaaactgaaggtgcgaccattctcactgggggtg 642
>gb|BE601982.3|BE601982 HVSMEh0100L22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100L22f, mRNA sequence
Length = 711
Score = 97.6 bits (49), Expect = 5e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 461 gagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatg 520
||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||
Sbjct: 3 gagaagggggcattgataactacctgagcatcaagcaggtgacggagtacacatctgatg 62
Query: 521 agccgtggggatggtac 537
||||||||| ||||||
Sbjct: 63 cgccgtgggggtggtac 79
>gb|BJ465869.1|BJ465869 BJ465869 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27l03 3', mRNA sequence
Length = 477
Score = 97.6 bits (49), Expect = 5e-019
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 461 gagaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatg 520
||||||||||||||||||||||||||||| |||| || || |||||||||| |||||||
Sbjct: 477 gagaagggggcattgataactacctgagcatcaaacaggtgacggagtacacatctgatg 418
Query: 521 agccgtggggatggtac 537
||||||||||||||||
Sbjct: 417 cgccgtggggatggtac 401
>gb|CK125684.1|CK125684 BES1824110a19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A1910 5-PRIME, mRNA sequence
Length = 600
Score = 97.6 bits (49), Expect = 5e-019
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagttc 90
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 442 gagggttgcaggcttgngccagttgttagtgaaggacagtatgagaagatcaagaagttc 501
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,532
Number of Sequences: 312970
Number of extensions: 50532
Number of successful extensions: 12774
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12688
Number of HSP's gapped (non-prelim): 82
length of query: 672
length of database: 175,134,539
effective HSP length: 19
effective length of query: 653
effective length of database: 169,188,109
effective search space: 110479835177
effective search space used: 110479835177
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)