BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM100095.2|BM100095 EBma01_SQ001_C23_R maternal, 4 DPA, ... 293 3e-078
gb|BQ763635.1|BQ763635 EBro03_SQ005_B06_R root, 3 week, wat... 293 3e-078
gb|CA013018.1|CA013018 HT07C12r HT Hordeum vulgare subsp. v... 293 3e-078
gb|AF023472.1|AF023472 Hordeum vulgare peptide transporter ... 293 3e-078
gb|AJ435519.1|AJ435519 AJ435519 S00002 Hordeum vulgare subs... 274 3e-072
gb|BF259472.2|BF259472 HVSMEf0019D07f Hordeum vulgare seedl... 214 3e-054
gb|AJ434419.1|AJ434419 AJ434419 S00002 Hordeum vulgare subs... 135 2e-030
gb|AJ461417.1|AJ461417 AJ461417 S00002 Hordeum vulgare subs... 135 2e-030
gb|CA000231.1|CA000231 HS09G01u HS Hordeum vulgare subsp. v... 135 2e-030
gb|AJ461416.1|AJ461416 AJ461416 S00002 Hordeum vulgare subs... 133 7e-030
gb|CA011015.1|CA011015 HT07C12u HT Hordeum vulgare subsp. v... 129 1e-028
gb|BU969481.1|BU969481 HB11K10r BC Hordeum vulgare subsp. v... 119 1e-025
gb|AV925465.1|AV925465 AV925465 K. Sato unpublished cDNA li... 101 3e-020
gb|AV930611.1|AV930611 AV930611 K. Sato unpublished cDNA li... 101 3e-020
gb|AV931970.1|AV931970 AV931970 K. Sato unpublished cDNA li... 101 3e-020
gb|BU999355.1|BU999355 HI14D24r HI Hordeum vulgare subsp. v... 84 6e-015
gb|BI956939.1|BI956939 HVSMEn0006D18f Hordeum vulgare rachi... 70 9e-011
gb|BE519768.1|BE519768 HV_CEb0021C13f Hordeum vulgare seedl... 70 9e-011
gb|BQ760868.1|BQ760868 EBro03_SQ003_L06_R root, 3 week, wat... 70 9e-011
gb|BE421953.1|BE421953 HWM017cB.07r ITEC HWM Barley Leaf Li... 62 2e-008
gb|BQ754044.1|BQ754044 EBca01_SQ002_K11_R carpel, pre-anthe... 62 2e-008
gb|CA010903.1|CA010903 HT07P15u HT Hordeum vulgare subsp. v... 62 2e-008
gb|BF258452.2|BF258452 HVSMEf0015M05f Hordeum vulgare seedl... 60 9e-008
gb|AJ462128.1|AJ462128 AJ462128 S00002 Hordeum vulgare subs... 60 9e-008
gb|BJ450133.1|BJ450133 BJ450133 K. Sato unpublished cDNA li... 60 9e-008
gb|BJ457560.1|BJ457560 BJ457560 K. Sato unpublished cDNA li... 60 9e-008
gb|CA000110.1|CA000110 HS16A10u HS Hordeum vulgare subsp. v... 60 9e-008
gb|AJ428921.1|AJ428921 AJ428921 Hordeum vulgare subsp. vulg... 56 1e-006
gb|AV933372.1|AV933372 AV933372 K. Sato unpublished cDNA li... 52 2e-005
gb|AV935814.1|AV935814 AV935814 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ543852.1|BJ543852 BJ543852 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ545418.1|BJ545418 BJ545418 K. Sato unpublished cDNA li... 52 2e-005
gb|BI777318.2|BI777318 EBro03_SQ002_N19_R root, 3 week, wat... 50 9e-005
gb|BQ760660.1|BQ760660 EBro03_SQ003_B22_R root, 3 week, wat... 50 9e-005
gb|BQ764115.1|BQ764115 EBro03_SQ006_G07_R root, 3 week, wat... 50 9e-005
gb|BQ764118.1|BQ764118 EBro03_SQ006_G10_R root, 3 week, wat... 50 9e-005
gb|BU975381.1|BU975381 HB30P24r BC Hordeum vulgare subsp. v... 50 9e-005
gb|CB879317.1|CB879317 HP11L18T HP Hordeum vulgare subsp. v... 50 9e-005
gb|AV920814.1|AV920814 AV920814 K. Sato unpublished cDNA li... 48 3e-004
gb|AL509442.1|AL509442 AL509442 Hordeum vulgare Barke devel... 46 0.001
gb|BF628254.2|BF628254 HVSMEb0003I17f Hordeum vulgare seedl... 46 0.001
gb|BF258602.2|BF258602 HVSMEf0016C23f Hordeum vulgare seedl... 46 0.001
gb|BF258688.2|BF258688 HVSMEf0016G17f Hordeum vulgare seedl... 46 0.001
gb|BF255295.3|BF255295 HVSMEf0006H16f Hordeum vulgare seedl... 46 0.001
gb|BG369361.2|BG369361 HVSMEi0024B17f Hordeum vulgare 20 DA... 46 0.001
gb|BQ463889.1|BQ463889 HG01L19r HG Hordeum vulgare subsp. v... 46 0.001
gb|BQ464818.1|BQ464818 HU01K17T HU Hordeum vulgare subsp. v... 46 0.001
gb|BU989960.1|BU989960 HF23G11r HF Hordeum vulgare subsp. v... 46 0.001
gb|BU994391.1|BU994391 HM06O15r HM Hordeum vulgare subsp. v... 46 0.001
gb|AL511639.1|AL511639 AL511639 Hordeum vulgare Barke devel... 44 0.005
gb|BE216021.1|BE216021 HV_CEb0009C09f Hordeum vulgare seedl... 44 0.005
gb|BE454147.3|BE454147 HVSMEh0093A04f Hordeum vulgare 5-45 ... 44 0.005
gb|BE216517.3|BE216517 HV_CEb0010L08f Hordeum vulgare seedl... 44 0.005
gb|AL501396.1|AL501396 AL501396 Hordeum vulgare Barke roots... 42 0.021
gb|AV915560.1|AV915560 AV915560 K. Sato unpublished cDNA li... 42 0.021
gb|BU999905.1|BU999905 HS16N14u HS Hordeum vulgare subsp. v... 42 0.021
gb|BU999983.1|BU999983 HS16H01u HS Hordeum vulgare subsp. v... 42 0.021
gb|CB877683.1|CB877683 HP05N03T HP Hordeum vulgare subsp. v... 42 0.021
gb|AL504116.1|AL504116 AL504116 Hordeum vulgare Barke roots... 40 0.082
gb|BI956536.1|BI956536 HVSMEn0003P23f Hordeum vulgare rachi... 40 0.082
gb|AV920658.1|AV920658 AV920658 K. Sato unpublished cDNA li... 40 0.082
gb|AJ435335.1|AJ435335 AJ435335 S00002 Hordeum vulgare subs... 40 0.082
gb|BJ458380.1|BJ458380 BJ458380 K. Sato unpublished cDNA li... 40 0.082
gb|BQ765788.1|BQ765788 EBro03_SQ008_M04_R root, 3 week, wat... 40 0.082
gb|BU998913.1|BU998913 HI12I20r HI Hordeum vulgare subsp. v... 40 0.082
gb|CB860073.1|CB860073 HI12I20w HI Hordeum vulgare subsp. v... 40 0.082
emb|AJ495773.1|HVU495773 Hordeum vulgare partial mRNA for p... 40 0.082
gb|AL510138.1|AL510138 AL510138 Hordeum vulgare Barke devel... 38 0.32
gb|BF259400.3|BF259400 HVSMEf0019A04f Hordeum vulgare seedl... 38 0.32
gb|BQ462946.1|BQ462946 HI02I08r HI Hordeum vulgare subsp. v... 38 0.32
gb|BQ659812.1|BQ659812 HF01M18w HF Hordeum vulgare subsp. v... 38 0.32
gb|BQ755329.1|BQ755329 EBed07_SQ002_F10_R endosperm, 28 DPA... 38 0.32
gb|BQ758892.1|BQ758892 EBma07_SQ003_K02_R maternal, 21 DPA,... 38 0.32
gb|BU980018.1|BU980018 HA18D16r HA Hordeum vulgare subsp. v... 38 0.32
gb|BU993945.1|BU993945 HM05A23r HM Hordeum vulgare subsp. v... 38 0.32
gb|CB878206.1|CB878206 HP07L08T HP Hordeum vulgare subsp. v... 38 0.32
gb|CB880557.1|CB880557 HM06O15w HM Hordeum vulgare subsp. v... 38 0.32
>gb|BM100095.2|BM100095 EBma01_SQ001_C23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_C23 5', mRNA sequence
Length = 412
Score = 293 bits (148), Expect = 3e-078
Identities = 196/212 (92%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| |||||| |||||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 96 ccatcgcgcagcacgggctgtacggggagaaggacgtggtgcccatctccatcttctggc 155
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 156 aggtgccgcagtacttcatcatcggctgcgccgaggtgttcaccttcgtggggcagctcg 215
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 216 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctcgctca 275
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
||||||| |||||||| |||||||||||||||
Sbjct: 276 ccaccgtggcgctcgggaactacctcagcacg 307
Score = 77.8 bits (39), Expect = 4e-013
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgc 321
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 356 gggtggatcccggacaacctcaacgtccgccacctcgactacttcttctggctgc 410
>gb|BQ763635.1|BQ763635 EBro03_SQ005_B06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B06 5', mRNA sequence
Length = 704
Score = 293 bits (148), Expect = 3e-078
Identities = 196/212 (92%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| |||||| |||||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 48 ccatcgcgcagcacgggctgtacggggagaaggacgtggtgcccatctccatcttctggc 107
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 108 aggtgccgcagtacttcatcatcggctgcgccgaggtgttcaccttcgtggggcagctcg 167
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 168 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctcgctca 227
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
||||||| |||||||| |||||||||||||||
Sbjct: 228 ccaccgtggcgctcgggaactacctcagcacg 259
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 gggtggatcccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 367
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| |||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 368 gcactcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 427
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 428 aagaccgccgaagatt 443
>gb|CA013018.1|CA013018 HT07C12r HT Hordeum vulgare subsp. vulgare cDNA clone HT07C12
5-PRIME, mRNA sequence
Length = 623
Score = 293 bits (148), Expect = 3e-078
Identities = 196/212 (92%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| |||||| |||||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 183 ccatcgcgcagcacgggctgtacggggagaaggacgtggtgcccatctccatcttctggc 242
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 243 aggtgccgcagtacttcatcatcggctgcgccgaggtgttcaccttcgtggggcagctcg 302
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 303 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctcgctca 362
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
||||||| |||||||| |||||||||||||||
Sbjct: 363 ccaccgtggcgctcgggaactacctcagcacg 394
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 gggtggatcccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 502
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| |||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 503 gcactcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 562
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 563 aagaccgccgaagatt 578
>gb|AF023472.1|AF023472 Hordeum vulgare peptide transporter (ptr1) mRNA, complete cds
Length = 2260
Score = 293 bits (148), Expect = 3e-078
Identities = 196/212 (92%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| |||||| |||||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 1585 ccatcgcgcagcacgggctgtacggggagaaggacgtggtgcccatctccatcttctggc 1644
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 1645 aggtgccgcagtacttcatcatcggctgcgccgaggtgttcaccttcgtggggcagctcg 1704
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1705 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctctcgctca 1764
Query: 187 ccaccgtcgcgctcggcaactacctcagcacg 218
||||||| |||||||| |||||||||||||||
Sbjct: 1765 ccaccgtggcgctcgggaactacctcagcacg 1796
Score = 139 bits (70), Expect = 1e-031
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1845 gggtggatcccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 1904
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 1905 gcgctcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 1964
Query: 387 aagacggccg 396
||||| ||||
Sbjct: 1965 aagaccgccg 1974
>gb|AJ435519.1|AJ435519 AJ435519 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200061H10F1, mRNA sequence
Length = 555
Score = 274 bits (138), Expect = 3e-072
Identities = 165/174 (94%)
Strand = Plus / Plus
Query: 45 gtgcccatctccatctgctggcagataccgcagtacttcatcatcgggtgcgcggaggtg 104
|||||||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||
Sbjct: 8 gtgcccatctccatcttctggcaggtgccgcagtacttcatcatcggctgcgccgaggtg 67
Query: 105 ttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatgaggagc 164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttcaccttcgtggggcagctcgagttcttctacgaccaggcgcccgacgccatgaggagc 127
Query: 165 atgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagcacg 218
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 128 atgtgctccgcgctctcgctcaccaccgtggcgctcgggaactacctcagcacg 181
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 230 gggtggatcccggacaacctcaacgtcggtcacctcgactacttcttctggctgctcgcc 289
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 290 gcgctcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 349
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 350 aagaccgccgaagatt 365
>gb|BF259472.2|BF259472 HVSMEf0019D07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D07f, mRNA sequence
Length = 757
Score = 214 bits (108), Expect = 3e-054
Identities = 183/208 (87%)
Strand = Plus / Plus
Query: 7 ccatcgcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggc 66
||||||||| ||||| |||||||| ||| | ||| | |||||||||||||||| |||||
Sbjct: 286 ccatcgcgcaacacgggctgtacggggagaaggacgtggtgcccatctccatcttctggc 345
Query: 67 agataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctgg 126
|| | |||||||||||||||||| | ||| | ||||||||||||||| ||||||||| |
Sbjct: 346 aggtgccgcagtacttcatcatcagctgcaccgaggtgttcaccttctcggggcagctag 405
Query: 127 agttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctca 186
||| ||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 406 agtacttatacgaccaggcgcccgacgccatgaggagcatgtgctgcgagctctcgctca 465
Query: 187 ccaccgtcgcgctcggcaactacctcag 214
||||||| |||||||| |||||||||||
Sbjct: 466 ccaccgtggcgctcgggaactacctcag 493
Score = 65.9 bits (33), Expect = 1e-009
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
||||||||||||| |||||||| ||| ||| ||||||||||||| |||||| ||| |
Sbjct: 546 gggtggatcccgggcgacctcaacgtcggtcacttcgactacttcttttggctggtcgac 605
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||| ||| |||||||| | |||||| |||| ||||||||||||| ||||||
Sbjct: 606 gagctcaacctcgtcaacttctgcgtctacctgctcatggccagctggtacacctacaag 665
Query: 387 aagac 391
|||||
Sbjct: 666 aagac 670
>gb|AJ434419.1|AJ434419 AJ434419 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200074E09F1, mRNA sequence
Length = 376
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 6 gggtggatcccggacaacctcaacgtcggtcacctcgactacttcttctggctgctcgcc 65
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 66 gcgctcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 125
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 126 aagaccgccgaagatt 141
>gb|AJ461417.1|AJ461417 AJ461417 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G06F1, mRNA sequence
Length = 240
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 5 gggtggatcccggacaacctcaacgtcggtcacctcgactacttcttctggctgctcgcc 64
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| ||||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 65 gcgctcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 124
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 125 aagaccgccgaagatt 140
>gb|CA000231.1|CA000231 HS09G01u HS Hordeum vulgare subsp. vulgare cDNA clone HS09G01
3-PRIME, mRNA sequence
Length = 456
Score = 135 bits (68), Expect = 2e-030
Identities = 119/136 (87%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 gggtggatcccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 312
Query: 327 gtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaag 386
| |||||||| |||||||| | |||||| |||||||||||||||||| ||||||
Sbjct: 311 gcactcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaag 252
Query: 387 aagacggccgatgatt 402
||||| ||||| ||||
Sbjct: 251 aagaccgccgaagatt 236
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 182 gctcaccaccgtcgcgctcggcaactacctcagcacg 218
|||||||||||| |||||||| |||||||||||||||
Sbjct: 456 gctcaccaccgtggcgctcgggaactacctcagcacg 420
>gb|AJ461416.1|AJ461416 AJ461416 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200030H10F1, mRNA sequence
Length = 240
Score = 133 bits (67), Expect = 7e-030
Identities = 118/135 (87%)
Strand = Plus / Plus
Query: 268 ggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1 ggtggatcccggacaacctcaacgtcggtcacctcgactacttcttctggctgctcgccg 60
Query: 328 tgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaaga 387
||||||||| |||||||| | |||||| |||||||||||||||||| |||||||
Sbjct: 61 cgctcagcctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaaga 120
Query: 388 agacggccgatgatt 402
|||| ||||| ||||
Sbjct: 121 agaccgccgaagatt 135
>gb|CA011015.1|CA011015 HT07C12u HT Hordeum vulgare subsp. vulgare cDNA clone HT07C12
3-PRIME, mRNA sequence
Length = 529
Score = 129 bits (65), Expect = 1e-028
Identities = 120/137 (87%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgcc 326
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 gggtggatcccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgcc 456
Query: 327 gtgctcagccttctcaacttc-cttgcctacctcgtcatcgccagctggtacaagtacaa 385
| |||||||| |||||||| | | |||||| |||||||||||||||||| |||||
Sbjct: 455 gcactcagcctcgtcaacttcgccggtctacctgctcatcgccagctggtacacctacaa 396
Query: 386 gaagacggccgatgatt 402
|||||| ||||| ||||
Sbjct: 395 gaagaccgccgaagatt 379
>gb|BU969481.1|BU969481 HB11K10r BC Hordeum vulgare subsp. vulgare cDNA clone HB11K10
5-PRIME, mRNA sequence
Length = 440
Score = 119 bits (60), Expect = 1e-025
Identities = 111/128 (86%)
Strand = Plus / Plus
Query: 275 cccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcag 334
|||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11 cccggacaacctcaacgtcggccacctcgactacttcttctggctgctcgccgcactcag 70
Query: 335 ccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaagaagacggc 394
||| |||||||| | |||||| |||||||||||||||||| ||||||||||| ||
Sbjct: 71 cctcgtcaacttcgccgtctacctgctcatcgccagctggtacacctacaagaagaccgc 130
Query: 395 cgatgatt 402
||| ||||
Sbjct: 131 cgaagatt 138
>gb|AV925465.1|AV925465 AV925465 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f11 5', mRNA sequence
Length = 649
Score = 101 bits (51), Expect = 3e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 418 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 477
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| ||||| ||||||| ||||| |||| |||||||| ||||||||||||
Sbjct: 478 tgaggagcctgtgcagcgcgctgcagctcatcaccacggcgctcgggaactacctcagc 536
>gb|AV930611.1|AV930611 AV930611 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f11 3', mRNA sequence
Length = 623
Score = 101 bits (51), Expect = 3e-020
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 526 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 467
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| ||||| ||||||| ||||| |||| |||||||| ||||||||||||
Sbjct: 466 tgaggagcctgtgcagcgcgctgcagctcatcaccacggcgctcgggaactacctcagc 408
Score = 42.1 bits (21), Expect = 0.021
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||| ||
Sbjct: 357 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgcttgc 298
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| |||| |||||
Sbjct: 297 agggctcagctttctgaactt 277
>gb|AV931970.1|AV931970 AV931970 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26p14 3', mRNA sequence
Length = 680
Score = 101 bits (51), Expect = 3e-020
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||||||| | ||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 496 cggaggtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgcca 437
Query: 157 tgaggagcatgtgctccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagc 215
|||||||| ||||| ||||||| ||||| |||| |||||||| ||||||||||||
Sbjct: 436 tgaggagcctgtgcagcgcgctgcagctcatcaccacggcgctcgggaactacctcagc 378
Score = 42.1 bits (21), Expect = 0.021
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||| ||
Sbjct: 327 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgcttgc 268
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| |||| |||||
Sbjct: 267 agggctcagctttctgaactt 247
>gb|BU999355.1|BU999355 HI14D24r HI Hordeum vulgare subsp. vulgare cDNA clone HI14D24
5-PRIME, mRNA sequence
Length = 545
Score = 83.8 bits (42), Expect = 6e-015
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 126 gagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctc 185
|||||||||||||||||| |||| ||||||||||||||| ||||| ||||||| ||||
Sbjct: 11 gagttcttctacgaccagtcgccggacgccatgaggagcctgtgcagcgcgctgcagctc 70
Query: 186 accaccgtcgcgctcggcaactacctcagc 215
| |||| |||||||| ||||||||||||
Sbjct: 71 atcaccacggcgctcgggaactacctcagc 100
Score = 42.1 bits (21), Expect = 0.021
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || ||||| ||| || | |||||| |||||||||||||||| ||
Sbjct: 151 cgggtggatccccgacaacctgaacgaggggcgcctcgataacttcttctggctgcttgc 210
Query: 326 cgtgctcagccttctcaactt 346
| ||||||| |||| |||||
Sbjct: 211 agggctcagctttctgaactt 231
>gb|BI956939.1|BI956939 HVSMEn0006D18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006D18f, mRNA sequence
Length = 518
Score = 69.9 bits (35), Expect = 9e-011
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 147 cgggtggatccccgacgacatcaacgacggccacctggactacttcttctggctgctcgc 206
Query: 326 cgtgctc 332
| |||||
Sbjct: 207 catgctc 213
Score = 65.9 bits (33), Expect = 1e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 124 tggagttcttctacgaccaggcgcccgacgccatgaggagc 164
||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 5 tggagttcttctacgaccaggcgccggacgccatgcggagc 45
>gb|BE519768.1|BE519768 HV_CEb0021C13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021C13f, mRNA sequence
Length = 637
Score = 69.9 bits (35), Expect = 9e-011
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 285 ctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
|||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct: 344 ctcaaccgcggccacctcgactacttctactggctcatcgccgcgctcagc 294
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 96 gcggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgac 152
||||| ||||||||| | || |||| || |||||||||||||||||||| |||||||
Sbjct: 530 gcggacgtgttcaccatggtcgggctgcaggagttcttctacgaccaggtgcccgac 474
>gb|BQ760868.1|BQ760868 EBro03_SQ003_L06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_L06 5', mRNA sequence
Length = 611
Score = 69.9 bits (35), Expect = 9e-011
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 285 ctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
|||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct: 267 ctcaaccgcggccacctcgactacttctactggctcatcgccgcgctcagc 217
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 96 gcggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgac 152
||||| ||||||||| | || |||| || |||||||||||||||||||| |||||||
Sbjct: 453 gcggacgtgttcaccatggtcgggctgcaggagttcttctacgaccaggtgcccgac 397
>gb|BE421953.1|BE421953 HWM017cB.07r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM017cB.07, mRNA sequence
Length = 1278
Score = 61.9 bits (31), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||| ||||||| ||||
Sbjct: 375 aacctcaaccgcgcgcacctcgactacttctactggctcctcgccgggctc 425
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 221 ggagttcttctacgaccaggtccccgacgc 250
>gb|BQ754044.1|BQ754044 EBca01_SQ002_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K11 5', mRNA sequence
Length = 473
Score = 61.9 bits (31), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||| ||||||| ||||
Sbjct: 241 aacctcaaccgcgcgcacctcgactacttctactggctcctcgccgggctc 291
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 87 ggagttcttctacgaccaggtccccgacgc 116
>gb|CA010903.1|CA010903 HT07P15u HT Hordeum vulgare subsp. vulgare cDNA clone HT07P15
3-PRIME, mRNA sequence
Length = 523
Score = 61.9 bits (31), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctc 332
||||||||||||| |||||||||||||||| |||||| ||||||| ||||
Sbjct: 273 aacctcaaccgcgcgcacctcgactacttctactggctcctcgccgggctc 223
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 427 ggagttcttctacgaccaggtccccgacgc 398
>gb|BF258452.2|BF258452 HVSMEf0015M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015M05f, mRNA sequence
Length = 892
Score = 60.0 bits (30), Expect = 9e-008
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 102 gtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatga 159
|||||||||||| | ||| ||| |||||||||||||||||| |||| ||||||||||
Sbjct: 552 gtgttcaccttcatcggggcgctcgagttcttctacgaccagtcgccggacgccatga 609
>gb|AJ462128.1|AJ462128 AJ462128 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052C08F1, mRNA sequence
Length = 360
Score = 60.0 bits (30), Expect = 9e-008
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 189 aacctcaaccgcgcgcaccttgactacttctactggctgctcgccg 234
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgcc 155
|||||||||||||||||||| |||||||||
Sbjct: 35 ggagttcttctacgaccaggtccccgacgcc 65
>gb|BJ450133.1|BJ450133 BJ450133 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28d05 5', mRNA sequence
Length = 676
Score = 60.0 bits (30), Expect = 9e-008
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 440 aacctcaaccgcgcgcaccttgactacttctactggctgctcgccg 485
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgcc 155
|||||||||||||||||||| |||||||||
Sbjct: 286 ggagttcttctacgaccaggtccccgacgcc 316
>gb|BJ457560.1|BJ457560 BJ457560 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28d05 3', mRNA sequence
Length = 664
Score = 60.0 bits (30), Expect = 9e-008
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 242 aacctcaaccgcgcgcaccttgactacttctactggctgctcgccg 197
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccaggcgcccgacgcc 155
|||||||||||||||||||| |||||||||
Sbjct: 396 ggagttcttctacgaccaggtccccgacgcc 366
>gb|CA000110.1|CA000110 HS16A10u HS Hordeum vulgare subsp. vulgare cDNA clone HS16A10
3-PRIME, mRNA sequence
Length = 434
Score = 60.0 bits (30), Expect = 9e-008
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 294 aacctcaaccgcgcgcaccttgactacttctactggctgctcgccg 249
>gb|AJ428921.1|AJ428921 AJ428921 Hordeum vulgare subsp. vulgare primary leaf 7-day old
seedling Hordeum vulgare subsp. vulgare cDNA clone
CE8a-6, mRNA sequence
Length = 229
Score = 56.0 bits (28), Expect = 1e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 119 gcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgc 170
|||||| |||||||||| ||| ||||||||||| |||||| ||||||||||
Sbjct: 175 gcagctagagttcttctttgacgaggcgcccgacaccatgaagagcatgtgc 124
>gb|AV933372.1|AV933372 AV933372 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i20 5', mRNA sequence
Length = 608
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 114 gtggggcagctggagttcttctacgaccaggcgcccga 151
|||||||| ||||||||| | |||||||||||||||||
Sbjct: 67 gtggggcacctggagttcatgtacgaccaggcgcccga 104
>gb|AV935814.1|AV935814 AV935814 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i20 3', mRNA sequence
Length = 609
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 114 gtggggcagctggagttcttctacgaccaggcgcccga 151
|||||||| ||||||||| | |||||||||||||||||
Sbjct: 565 gtggggcacctggagttcatgtacgaccaggcgcccga 528
>gb|BJ543852.1|BJ543852 BJ543852 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15p04 5', mRNA sequence
Length = 596
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 114 gtggggcagctggagttcttctacgaccaggcgcccga 151
|||||||| ||||||||| | |||||||||||||||||
Sbjct: 38 gtggggcacctggagttcatgtacgaccaggcgcccga 75
Score = 40.1 bits (20), Expect = 0.082
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 274 tcccggagaacctcaaccgcggccacctcgactacttcttctgg 317
||||||| ||| ||||||||||| | || |||||||||| ||||
Sbjct: 198 tcccggacaacatcaaccgcggcaagctggactacttctactgg 241
>gb|BJ545418.1|BJ545418 BJ545418 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15p04 3', mRNA sequence
Length = 611
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 114 gtggggcagctggagttcttctacgaccaggcgcccga 151
|||||||| ||||||||| | |||||||||||||||||
Sbjct: 593 gtggggcacctggagttcatgtacgaccaggcgcccga 556
Score = 40.1 bits (20), Expect = 0.082
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 274 tcccggagaacctcaaccgcggccacctcgactacttcttctgg 317
||||||| ||| ||||||||||| | || |||||||||| ||||
Sbjct: 433 tcccggacaacatcaaccgcggcaagctggactacttctactgg 390
>gb|BI777318.2|BI777318 EBro03_SQ002_N19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N19 5', mRNA sequence
Length = 387
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgt 328
||||||||||||| |||||||||||||||
Sbjct: 43 ctcgactacttctactggctgctcgccgt 71
>gb|BQ760660.1|BQ760660 EBro03_SQ003_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_B22 5', mRNA sequence
Length = 497
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgt 328
||||||||||||| |||||||||||||||
Sbjct: 210 ctcgactacttctactggctgctcgccgt 238
>gb|BQ764115.1|BQ764115 EBro03_SQ006_G07_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_G07 5', mRNA sequence
Length = 400
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgt 328
||||||||||||| |||||||||||||||
Sbjct: 105 ctcgactacttctactggctgctcgccgt 133
>gb|BQ764118.1|BQ764118 EBro03_SQ006_G10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_G10 5', mRNA sequence
Length = 717
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgt 328
||||||||||||| |||||||||||||||
Sbjct: 467 ctcgactacttctactggctgctcgccgt 495
>gb|BU975381.1|BU975381 HB30P24r BC Hordeum vulgare subsp. vulgare cDNA clone HB30P24
5-PRIME, mRNA sequence
Length = 583
Score = 50.1 bits (25), Expect = 9e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gggcagctggagttcttctacgaccaggcgcccgacg 153
|||||||||||||||||| ||| |||||||||||||
Sbjct: 16 gggcagctggagttcttcaacgggcaggcgcccgacg 52
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgac 305
||||||||||||| ||||||||| |||||||||||||
Sbjct: 166 gggtggatcccgggtaacctcaactccggccacctcgac 204
>gb|CB879317.1|CB879317 HP11L18T HP Hordeum vulgare subsp. vulgare cDNA clone HP11L18
5-PRIME, mRNA sequence
Length = 610
Score = 50.1 bits (25), Expect = 9e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 130 tcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgct 178
|||||||||||||||| || ||| |||||||||| ||||||| |||||
Sbjct: 117 tcttctacgaccaggctccgcacggcatgaggagcctgtgctctgcgct 165
>gb|AV920814.1|AV920814 AV920814 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15k17 3', mRNA sequence
Length = 679
Score = 48.1 bits (24), Expect = 3e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 288 aaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
||||| ||||| ||||| ||||||| |||||| || ||||||||||||
Sbjct: 108 aaccgaggccatctcgattacttctactggcttctggccgtgctcagc 61
>gb|AL509442.1|AL509442 AL509442 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N08u 3',
mRNA sequence
Length = 444
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttct 312
||||||||||| || ||||||||||||||||
Sbjct: 234 aacctcaaccggggtcacctcgactacttct 204
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccag 143
|||||||||||||||||||
Sbjct: 391 ggagttcttctacgaccag 373
>gb|BF628254.2|BF628254 HVSMEb0003I17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003I17f, mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 473 tcgcgctcggcaactacctcagc 495
>gb|BF258602.2|BF258602 HVSMEf0016C23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016C23f, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 46 tcgcgctcggcaactacctcagc 68
>gb|BF258688.2|BF258688 HVSMEf0016G17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016G17f, mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 223 tcgcgctcggcaactacctcagc 245
>gb|BF255295.3|BF255295 HVSMEf0006H16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006H16f, mRNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 144 tcgcgctcggcaactacctcagc 166
>gb|BG369361.2|BG369361 HVSMEi0024B17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024B17f, mRNA sequence
Length = 458
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgac 305
||||||||||||| ||||||||| |||||||||||||
Sbjct: 92 gggtggatcccgggtaacctcaactccggccacctcgac 130
>gb|BQ463889.1|BQ463889 HG01L19r HG Hordeum vulgare subsp. vulgare cDNA clone HG01L19
5-PRIME, mRNA sequence
Length = 459
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 126 gagttcttctacgaccaggcgcc 148
|||||||||||||||||||||||
Sbjct: 331 gagttcttctacgaccaggcgcc 353
>gb|BQ464818.1|BQ464818 HU01K17T HU Hordeum vulgare subsp. vulgare cDNA clone HU01K17
5-PRIME, mRNA sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgcc 155
|||||||||||||||||||| |||||||||
Sbjct: 467 ggagttcttctacgaccaggtccccgacgcc 497
>gb|BU989960.1|BU989960 HF23G11r HF Hordeum vulgare subsp. vulgare cDNA clone HF23G11
5-PRIME, mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 313 tcgcgctcggcaactacctcagc 335
>gb|BU994391.1|BU994391 HM06O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM06O15
5-PRIME, mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 301 tcgactacttcttctggctgctcgccgtgctcagc 335
|||||||| ||| ||||||||| ||||||||||||
Sbjct: 135 tcgactacctctactggctgctggccgtgctcagc 169
>gb|AL511639.1|AL511639 AL511639 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L15u 3',
mRNA sequence
Length = 575
Score = 44.1 bits (22), Expect = 0.005
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 267 gggtggatcccggagaacctcaaccgcggccacctcgactacttct 312
|||||||||||||| ||||| ||| ||||||||| |||||||||
Sbjct: 223 gggtggatcccggacgacctcgaccaaggccacctcaactacttct 178
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,928
Number of Sequences: 312970
Number of extensions: 77928
Number of successful extensions: 23853
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23710
Number of HSP's gapped (non-prelim): 136
length of query: 607
length of database: 175,134,539
effective HSP length: 19
effective length of query: 588
effective length of database: 169,188,109
effective search space: 99482608092
effective search space used: 99482608092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)