BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204317.2.1
(607 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA li... 88 4e-016
gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA li... 88 4e-016
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 88 4e-016
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 88 4e-016
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 88 4e-016
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 84 6e-015
gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. v... 76 1e-012
gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Libr... 70 9e-011
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 70 9e-011
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 70 9e-011
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 70 9e-011
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 70 9e-011
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 70 9e-011
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 70 9e-011
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 70 9e-011
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 70 9e-011
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 70 9e-011
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 70 9e-011
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 70 9e-011
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 70 9e-011
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 70 9e-011
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 70 9e-011
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 70 9e-011
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 70 9e-011
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 70 9e-011
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 70 9e-011
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 70 9e-011
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 70 9e-011
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 70 9e-011
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 70 9e-011
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 70 9e-011
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 70 9e-011
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 70 9e-011
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 70 9e-011
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 70 9e-011
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 64 6e-009
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 64 6e-009
gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA li... 64 6e-009
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 64 6e-009
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 62 2e-008
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 62 2e-008
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 60 9e-008
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 60 9e-008
gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA li... 58 3e-007
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 58 3e-007
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 56 1e-006
gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA li... 56 1e-006
gb|BQ755335.1|BQ755335 EBed07_SQ002_G10_R endosperm, 28 DPA... 56 1e-006
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 56 1e-006
gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots... 54 5e-006
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 54 5e-006
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 54 5e-006
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 52 2e-005
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 52 2e-005
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 52 2e-005
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 52 2e-005
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 52 2e-005
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 52 2e-005
gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no... 52 2e-005
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 52 2e-005
gb|AV921085.1|AV921085 AV921085 K. Sato unpublished cDNA li... 50 9e-005
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 48 3e-004
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 48 3e-004
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 48 3e-004
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 48 3e-004
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 48 3e-004
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 48 3e-004
gb|BJ466129.1|BJ466129 BJ466129 K. Sato unpublished cDNA li... 48 3e-004
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 48 3e-004
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 48 3e-004
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 48 3e-004
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 48 3e-004
gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. v... 48 3e-004
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 48 3e-004
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 48 3e-004
gb|CA027495.1|CA027495 HZ59B20r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 48 3e-004
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 46 0.001
gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA li... 46 0.001
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 46 0.001
gb|BE601859.2|BE601859 HVSMEh0099M17f Hordeum vulgare 5-45 ... 44 0.005
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 44 0.005
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 44 0.005
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 44 0.005
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 44 0.005
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 44 0.005
gb|AV919354.1|AV919354 AV919354 K. Sato unpublished cDNA li... 44 0.005
gb|AJ462184.1|AJ462184 AJ462184 S00002 Hordeum vulgare subs... 44 0.005
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 44 0.005
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 44 0.005
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 44 0.005
gb|BQ663387.1|BQ663387 HU02G21u HU Hordeum vulgare subsp. v... 44 0.005
gb|BM441741.2|BM441741 EBed07_SQ001_G19_R endosperm, 28 DPA... 44 0.005
gb|BM441944.2|BM441944 EBed07_SQ001_P23_R endosperm, 28 DPA... 44 0.005
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 44 0.005
gb|BU989213.1|BU989213 HF21B21r HF Hordeum vulgare subsp. v... 44 0.005
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 44 0.005
gb|CA010249.1|CA010249 HT11B14u HT Hordeum vulgare subsp. v... 44 0.005
gb|BJ468562.1|BJ468562 BJ468562 K. Sato unpublished cDNA li... 42 0.021
gb|BQ756549.1|BQ756549 EBem09_SQ003_A16_R embryo, 1 Day ger... 42 0.021
gb|BG417890.1|BG417890 HVSMEk0019O06f Hordeum vulgare testa... 40 0.082
gb|BQ758950.1|BQ758950 EBma07_SQ003_G09_R maternal, 21 DPA,... 40 0.082
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 38 0.32
gb|BI955849.1|BI955849 HVSMEm0024M10f Hordeum vulgare green... 38 0.32
gb|BM441924.2|BM441924 EBed07_SQ001_O24_R endosperm, 28 DPA... 38 0.32
>gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 5', mRNA sequence
Length = 547
Score = 87.7 bits (44), Expect = 4e-016
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 240 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 181
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 180 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 121
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||| || || ||| |||||| ||||||||||| |||||||||||||| ||||
Sbjct: 120 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctcggcgaggtag 65
>gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 3', mRNA sequence
Length = 581
Score = 87.7 bits (44), Expect = 4e-016
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 358 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 417
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 418 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 477
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||| || || ||| |||||| ||||||||||| |||||||||||||| ||||
Sbjct: 478 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctcggcgaggtag 533
>gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_E17 5', mRNA sequence
Length = 436
Score = 87.7 bits (44), Expect = 4e-016
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 244 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 185
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 184 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 125
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||| || || ||| |||||| ||||||||||| |||||||||||||| ||||
Sbjct: 124 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctcggcgaggtag 69
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 87.7 bits (44), Expect = 4e-016
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 68 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 127
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 128 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 187
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||| || || ||| |||||| ||||||||||| |||||||||||||| ||||
Sbjct: 188 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctcggcgaggtag 243
>gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL114f9 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 714
Score = 87.7 bits (44), Expect = 4e-016
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 276 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 217
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 216 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 157
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||| || || ||| |||||| ||||||||||| |||||||||||||| ||||
Sbjct: 156 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctcggcgaggtag 101
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 83.8 bits (42), Expect = 6e-015
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
||||||||||||| |||| ||||||| ||| ||||| ||| | ||||||||||||||
Sbjct: 577 tgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgt 518
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | |||||||||||||| || || ||| |||||| ||||||||||| |||||
Sbjct: 517 cgaggagggaccaggcgaagtagccgaccacgttcgcgccgtcgtcgatcgccttcttca 458
Query: 366 gctcggcgacgtag 379
||||||||| ||||
Sbjct: 457 gctcggcgaggtag 444
>gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62G02
5-PRIME, mRNA sequence
Length = 552
Score = 75.8 bits (38), Expect = 1e-012
Identities = 134/166 (80%)
Strand = Plus / Minus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 166 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 107
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 106 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 47
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctc 369
|||| || || ||| |||||| ||||||||||| |||||||||
Sbjct: 46 agtagccgaccacgttcgcgccgtcgtcgatcgccttcttcagctc 1
>gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D01, mRNA sequence
Length = 1300
Score = 69.9 bits (35), Expect = 9e-011
Identities = 125/155 (80%)
Strand = Plus / Minus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 206 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 147
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 146 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 87
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgcc 358
|||| || || ||| |||||| |||||||||||
Sbjct: 86 agtagccgaccacgttcgcgccgtcgtcgatcgcc 52
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 393 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 334
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 333 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 274
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 273 gctcgctgaggtagctccggtag 251
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggca 572
|||||||||||||||| || |||||| |||| ||||||||||
Sbjct: 108 acgatgtagagccagttcgaattcgcctttggcccaatcggca 66
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 469 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 410
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 409 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 350
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 349 gctcgctgaggtagctccggtag 327
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 185 acgatgtagagccagttcgaattcgcctttggtccaatcggc 144
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 327 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 268
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 267 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 208
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 207 gctcgctgaggtagctccggtag 185
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 227 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 286
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 287 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 346
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 347 gctcgctgaggtagctccggtag 369
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 511 acgatgtagagccagttcgaattcgcctttggtccaatcggc 552
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 196 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 255
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 256 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 315
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 316 gctcgctgaggtagctccggtag 338
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 480 acgatgtagagccagttcgaattcgcctttggtccaatcggc 521
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 222 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 281
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 282 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 341
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 342 gctcgctgaggtagctccggtag 364
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 506 acgatgtagagccagttcgaattcgcctttggtccaatcggc 547
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 216 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 275
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 276 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 335
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 336 gctcgctgaggtagctccggtag 358
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 500 acgatgtagagccagttcgaattcgcctttggtccaatcggc 541
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 222 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 281
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 282 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 341
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 342 gctcgctgaggtagctccggtag 364
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 506 acgatgtagagccagttcgaattcgcctttggtccaatcggc 547
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 208 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 267
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 268 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 327
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 328 gctcgctgaggtagctccggtag 350
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 492 acgatgtagagccagttcgaattcgcctttggtccaatcggc 533
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 214 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 273
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 274 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 333
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 334 gctcgctgaggtagctccggtag 356
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 498 acgatgtagagccagttcgaattcgcctttggtccaatcggc 539
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 217 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 276
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 277 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 336
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 337 gctcgctgaggtagctccggtag 359
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 501 acgatgtagagccagttcgaattcgcctttggtccaatcggc 542
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 195 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 254
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 255 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 314
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 315 gctcgctgaggtagctccggtag 337
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 479 acgatgtagagccagttcgaattcgcctttggtccaatcggc 520
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 217 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 276
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 277 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 336
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 337 gctcgctgaggtagctccggtag 359
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 501 acgatgtagagccagttcgaattcgcctttggtccaatcggc 542
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 223 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 282
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 283 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 342
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 343 gctcgctgaggtagctccggtag 365
>gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 3', mRNA sequence
Length = 503
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 217 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 276
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 277 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 336
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 337 gctcgctgaggtagctccggtag 359
>gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085B05F1, mRNA sequence
Length = 343
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 235 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 176
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 175 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 116
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 115 gctcgctgaggtagctccggtag 93
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 196 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 255
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 256 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 315
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 316 gctcgctgaggtagctccggtag 338
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 480 acgatgtagagccagttcgaattcgcctttggtccaatcggc 521
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 191 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 250
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 251 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 310
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 311 gctcgctgaggtagctccggtag 333
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 475 acgatgtagagccagttcgaattcgcctttggtccaatcggc 516
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 213 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 272
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 273 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 332
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 333 gctcgctgaggtagctccggtag 355
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 497 acgatgtagagccagttcgaattcgcctttggtccaatcggc 538
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 196 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 255
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 256 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 315
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 316 gctcgctgaggtagctccggtag 338
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 480 acgatgtagagccagttcgaattcgcctttggtccaatcggc 521
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 196 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 255
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 256 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 315
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 316 gctcgctgaggtagctccggtag 338
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 480 acgatgtagagccagttcgaattcgcctttggtccaatcggc 521
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 576 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 517
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 516 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 457
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 456 gctcgctgaggtagctccggtag 434
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 292 acgatgtagagccagttcgaattcgcctttggcccaatcggc 251
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 350 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 291
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 290 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 231
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 230 gctcgctgaggtagctccggtag 208
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 66 acgatgtagagccagttcgaattcgcctttggtccaatcggc 25
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 550 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 491
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 490 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 431
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 430 gctcgctgaggtagctccggtag 408
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 266 acgatgtagagccagttcgaattcgcctttggcccaatcggc 225
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 369 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 310
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 309 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 250
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 249 gctcgctgaggtagctccggtag 227
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 85 acgatgtagagccagttcgaattcgcctttggcccaatcggc 44
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 217 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 276
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 277 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 336
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 337 gctcgctgaggtagctccggtag 359
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 501 acgatgtagagccagttcgaattcgcctttggcccaatcggc 542
>gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06M21
3-PRIME, mRNA sequence
Length = 403
Score = 69.9 bits (35), Expect = 9e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 241 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 300
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 301 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 360
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 361 gctcgctgaggtagctccggtag 383
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 63.9 bits (32), Expect = 6e-009
Identities = 115/143 (80%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| | ||| ||| || | ||||||| |||||||
Sbjct: 703 tgaagtcgacgtagacgatgccgaacttgnacgagtagccggacatccactcaaagttgt 644
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 643 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 584
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 583 gctcgctgaggtagctccggtag 561
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 419 acgatgtagagccagttcgaattcgcctttggcccaatcggc 378
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 63.9 bits (32), Expect = 6e-009
Identities = 115/143 (80%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 463 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 404
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | | ||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 403 cgaggagagnccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 344
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 343 gctcgctgaggtagctccggtag 321
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 179 acgatgtagagccagttcgaattcgcctttggtccaatcggc 138
>gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 3', mRNA sequence
Length = 581
Score = 63.9 bits (32), Expect = 6e-009
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 204 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 263
|||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| ||||
Sbjct: 431 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 490
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||| ||| ||||| ||| | |||||||||||||||||| | ||||||||||
Sbjct: 491 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcgaggagggaccaggcga 550
Query: 324 agta 327
||||
Sbjct: 551 agta 554
>gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_D19 5', mRNA sequence
Length = 480
Score = 63.9 bits (32), Expect = 6e-009
Identities = 115/143 (80%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 472 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 413
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 412 ngaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 353
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 352 gctcgctgaggtagctccggtag 330
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| ||||||||||||||
Sbjct: 187 acgatgtagagccagttcgaattcgcctttggtccaatcggc 146
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 61.9 bits (31), Expect = 2e-008
Identities = 115/143 (80%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
||||||||||||| |||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 237 tgaagtcgacgtaaacgatgccgaacttggacgagtagccggacatccactcaaagttgt 296
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 297 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 356
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 357 gctcgctgaggtagctccggtag 379
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcgg 570
|||||||||||||||| || |||||| |||| ||||||||
Sbjct: 521 acgatgtagagccagttcgaattcgcctttggcccaatcgg 561
>gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H06 5', mRNA sequence
Length = 433
Score = 61.9 bits (31), Expect = 2e-008
Identities = 115/143 (80%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 193 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 134
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| | | |||||
Sbjct: 133 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatgggcttcttca 74
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 73 gctcgctgaggtagctccggtag 51
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 60.0 bits (30), Expect = 9e-008
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 250 gtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgag 309
||||||||||||||| |||||| ||| ||| | |||| | ||||||||||||||| ||
Sbjct: 284 gtcgacgtagacgagcccgaacttggaggtgaagcccatccgccactcgaagttgtccag 343
Query: 310 caacgaccaggcgaagta 327
|| |||||| ||||||||
Sbjct: 344 cagcgaccacgcgaagta 361
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 60.0 bits (30), Expect = 9e-008
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 250 gtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgag 309
||||||||||||||| |||||| ||| ||| | |||| | ||||||||||||||| ||
Sbjct: 343 gtcgacgtagacgagcccgaacttggaggtgaagcccatccgccactcgaagttgtccag 284
Query: 310 caacgaccaggcgaagta 327
|| |||||| ||||||||
Sbjct: 283 cagcgaccacgcgaagta 266
>gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 3', mRNA sequence
Length = 510
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 222 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 281
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 282 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 341
Query: 366 gctcg 370
|||||
Sbjct: 342 gctcg 346
>gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43f6 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 506
Score = 58.0 bits (29), Expect = 3e-007
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtc 351
|||||||||||||||||| | |||||||||||||| || || ||| |||||| ||||
Sbjct: 334 ccactcgaagttgtcgagaagggaccaggcgaagtagccgaccacgttcgcgccgtcgtc 275
Query: 352 gatcgcc-gccttcagctcggcgacgtag 379
||||||| | ||||||||||||| ||||
Sbjct: 274 gatcgccttctttcagctcggcgaggtag 246
>gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016D19f, mRNA sequence
Length = 887
Score = 56.0 bits (28), Expect = 1e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 300 agttgtcgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccg 359
|||||||||||| |||||| ||||||| || || ||| |||||| |||||||||||
Sbjct: 722 agttgtcgagcagggaccagccgaagtagccgaccacgttcgcgccgtcgtcgatcgcct 663
Query: 360 ccttcagctcggcgacgtag 379
|||||||||||||| ||||
Sbjct: 662 tcttcagctcggcgaggtag 643
>gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e05 3', mRNA sequence
Length = 372
Score = 56.0 bits (28), Expect = 1e-006
Identities = 114/143 (79%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
||||||||||||| |||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 164 tgaagtcgacgtatacgatgccgaacttggacgagtagccggacatccactcaaagttgt 223
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| || ||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 224 cgaggagagaccacgcnaagtagccgagaacgttggcgccaccgtcgatggccttcttca 283
Query: 366 gctcggcgacgtagctccggtag 388
||||| || |||||||||||||
Sbjct: 284 gctcgctgaggtagctccggtag 306
>gb|BQ755335.1|BQ755335 EBed07_SQ002_G10_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_G10 5', mRNA sequence
Length = 449
Score = 56.0 bits (28), Expect = 1e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 500 taggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgccctt 559
||||| || ||||||| || |||||| ||||| ||||| |||||||| ||||| || |
Sbjct: 313 taggtcacagctttgttcattccccacggcacaatgtaaagccagtcggagtttgcacga 254
Query: 560 ggtccaatcggcacaccgtcgcgttcatagac 591
|||||||| |||||||| | |||||||||||
Sbjct: 253 ggtccaataggcacaccatttcgttcatagac 222
>gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A13
3-PRIME, mRNA sequence
Length = 680
Score = 56.0 bits (28), Expect = 1e-006
Identities = 116/144 (80%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||||||||||||||||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 248 tgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgt 307
Query: 306 cgagcaac-gaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttc 364
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| ||||
Sbjct: 308 cgagggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttc 367
Query: 365 agctcggcgacgtagctccggtag 388
|||||| || |||||||||||||
Sbjct: 368 agctcgctgaggtagctccggtag 391
Score = 44.1 bits (22), Expect = 0.005
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 530 acgatgtagagccagtctgagttcgcccttggtccaatcggc 571
|||||||||||||||| || |||||| |||| |||||||||
Sbjct: 533 acgatgtagagccagttcgaattcgcctttggcccaatcggc 574
>gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06E22u 3', mRNA sequence
Length = 393
Score = 54.0 bits (27), Expect = 5e-006
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
||||||||||||| |||| ||||||| ||||| ||| || | ||||||| |||||||
Sbjct: 262 tgaagtcgacgtanacgatgccgaacttggacgagtanccggacatccactcaaagttgt 321
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||| | ||||| |||||||| || | ||||||||| |||||||| ||| |||||
Sbjct: 322 cgaggagagaccacgcgaagtagccgagaacgttggcgccaccgtcgatggccttcttca 381
Query: 366 gctcg 370
|||||
Sbjct: 382 gctcg 386
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,472
Number of Sequences: 312970
Number of extensions: 64472
Number of successful extensions: 19662
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19377
Number of HSP's gapped (non-prelim): 200
length of query: 607
length of database: 175,134,539
effective HSP length: 19
effective length of query: 588
effective length of database: 169,188,109
effective search space: 99482608092
effective search space used: 99482608092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)