BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203838.2.1
(534 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 101 2e-020
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 90 9e-017
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 84 5e-015
gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. v... 76 1e-012
gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. v... 76 1e-012
gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. v... 74 5e-012
gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA li... 74 5e-012
gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA li... 74 5e-012
gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA li... 74 5e-012
gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. v... 74 5e-012
gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow st... 62 2e-008
gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no... 62 2e-008
gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA li... 62 2e-008
gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. v... 62 2e-008
gb|BJ549631.1|BJ549631 BJ549631 K. Sato unpublished cDNA li... 58 3e-007
gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. v... 56 1e-006
gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no... 54 5e-006
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 52 2e-005
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 7e-005
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 7e-005
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 7e-005
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 7e-005
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 50 7e-005
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 50 7e-005
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 7e-005
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.001
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.001
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.001
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.001
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.001
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.001
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.001
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.001
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.001
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.001
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.001
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.001
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.001
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.001
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.001
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.001
gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots... 44 0.005
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 44 0.005
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 44 0.005
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 44 0.005
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.005
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 42 0.018
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 42 0.018
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 42 0.018
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 42 0.018
gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. v... 42 0.018
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.018
gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day ger... 42 0.018
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 42 0.018
gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. v... 42 0.018
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.072
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.072
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.072
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.072
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.28
gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA li... 38 0.28
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 38 0.28
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 38 0.28
>gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c03 3', mRNA sequence
Length = 641
Score = 101 bits (51), Expect = 2e-020
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||||||||||||||||||||||| ||||| || || ||||||||||||| ||
Sbjct: 236 gagggtgttgccgatgtcgatgacgaagcgataccttacatcagccttggcgaggcggtc 295
Query: 285 catggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgctt 344
||||||| || || | |||| | ||| | |||||||| || |||| ||||||||
Sbjct: 296 catggccgtgttgacatagtcggcacggatgacctcgatgtcggccgtcacgccgtgctt 355
Query: 345 ggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggccag 404
||| |||| ||||| ||||||||| || || || |||| |||||||||||||| |||||
Sbjct: 356 ggccgcgaggtccagcatctcctgggtctcgctcatgccgcccatgcagctccccgccag 415
Query: 405 agtcttg 411
||||||
Sbjct: 416 ggtcttg 422
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 89.7 bits (45), Expect = 9e-017
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 349 gcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggccagagtc 408
|||||||| | |||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct: 341 gcgaagtcgagcatctcctgcgtctcgctgatgctcgccatgcagctcccggccagagtc 282
Query: 409 ttgcc 413
|||||
Sbjct: 281 ttgcc 277
Score = 85.7 bits (43), Expect = 1e-015
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 218 ccgcgttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcga 277
|||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |
Sbjct: 472 ccgccttgatggtgttaccgacgtcgatgacgaagcggtacctgacgtcgcccttggcca 413
Query: 278 ggcgttccatggcct 292
|||| ||||| ||||
Sbjct: 412 ggcgctccattgcct 398
Score = 38.2 bits (19), Expect = 0.28
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 466 agcaggatcatcttgccctgggg 488
||||||||||||||||| |||||
Sbjct: 224 agcaggatcatcttgccgtgggg 202
>gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd27e20, mRNA
sequence
Length = 646
Score = 83.8 bits (42), Expect = 5e-015
Identities = 150/186 (80%)
Strand = Plus / Plus
Query: 226 agggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttcc 285
||||| |||||||||||||||||||| || |||||||| ||| ||||||| || || |||
Sbjct: 197 agggtattgccgatgtcgatgacgaatcgatacctgacatcggccttggcaagtcgctcc 256
Query: 286 atggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgcttg 345
|||||| || || | |||| | | |||| ||||||||||| |||| |||||||
Sbjct: 257 atggccgtgttcacgtactcggcgtcaatcacctcgatgtccgccgtcacgtcgtgcttc 316
Query: 346 gctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggccaga 405
|| || | |||| ||||||||| |||||||| |||| || |||||||||||||||||
Sbjct: 317 gccgccagatccagcatctcctgggtgtccctcatgccgccgatgcagctcccggccagg 376
Query: 406 gtcttg 411
||||||
Sbjct: 377 gtcttg 382
>gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N11
5-PRIME, mRNA sequence
Length = 480
Score = 75.8 bits (38), Expect = 1e-012
Identities = 149/186 (80%)
Strand = Plus / Minus
Query: 226 agggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttcc 285
||||| |||||||||||||||||||| || |||||||| ||| ||||||| || || |||
Sbjct: 257 agggtattgccgatgtcgatgacgaaccgatacctgacatcggccttggcaagtcgctcc 198
Query: 286 atggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgcttg 345
|||||| || || | |||| | | |||| ||||||||||| |||| | |||||
Sbjct: 197 atggccgtgttcacgtactcggcgtcaatcacctcgatgtccgccgtcacgtcatgcttc 138
Query: 346 gctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggccaga 405
|| || | |||| ||||||||| |||||||| |||| || |||||||||||||||||
Sbjct: 137 gccgccagatccagcatctcctgggtgtccctcatgccgccgatgcagctcccggccagg 78
Query: 406 gtcttg 411
||||||
Sbjct: 77 gtcttg 72
>gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N11
3-PRIME, mRNA sequence
Length = 479
Score = 75.8 bits (38), Expect = 1e-012
Identities = 149/186 (80%)
Strand = Plus / Plus
Query: 226 agggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttcc 285
||||| |||||||||||||||||||| || |||||||| ||| ||||||| || || |||
Sbjct: 224 agggtattgccgatgtcgatgacgaaccgatacctgacatcggccttggcaagtcgctcc 283
Query: 286 atggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgcttg 345
|||||| || || | |||| | | |||| ||||||||||| |||| | |||||
Sbjct: 284 atggccgtgttcacgtactcggcgtcaatcacctcgatgtccgccgtcacgtcatgcttc 343
Query: 346 gctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggccaga 405
|| || | |||| ||||||||| |||||||| |||| || |||||||||||||||||
Sbjct: 344 gccgccagatccagcatctcctgggtgtccctcatgccgccgatgcagctcccggccagg 403
Query: 406 gtcttg 411
||||||
Sbjct: 404 gtcttg 409
>gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
3-PRIME, mRNA sequence
Length = 497
Score = 73.8 bits (37), Expect = 5e-012
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 290 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 349
Query: 379 atgctccccatgcagctcccggccagagtcttg 411
|||| || ||||||||||||||||| ||||||
Sbjct: 350 atgccgccgatgcagctcccggccagggtcttg 382
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 196 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 255
Query: 285 cat 287
|||
Sbjct: 256 cat 258
>gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 5', mRNA sequence
Length = 572
Score = 73.8 bits (37), Expect = 5e-012
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 337 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 278
Query: 379 atgctccccatgcagctcccggccagagtcttg 411
|||| || ||||||||||||||||| ||||||
Sbjct: 277 atgccgccgatgcagctcccggccagggtcttg 245
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 431 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 372
Query: 285 cat 287
|||
Sbjct: 371 cat 369
>gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 3', mRNA sequence
Length = 634
Score = 73.8 bits (37), Expect = 5e-012
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 284 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 343
Query: 379 atgctccccatgcagctcccggccagagtcttg 411
|||| || ||||||||||||||||| ||||||
Sbjct: 344 atgccgccgatgcagctcccggccagggtcttg 376
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 190 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 249
Query: 285 cat 287
|||
Sbjct: 250 cat 252
>gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25k20 3', mRNA sequence
Length = 600
Score = 73.8 bits (37), Expect = 5e-012
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 254 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 313
Query: 379 atgctccccatgcagctcccggccagagtcttg 411
|||| || ||||||||||||||||| ||||||
Sbjct: 314 atgccgccgatgcagctcccggccagggtcttg 346
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 160 gagggtgttggcgatgtcgatgacgaatcgatacctgacatcagccttggcaaggcgctc 219
Query: 285 cat 287
|||
Sbjct: 220 cat 222
>gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. vulgare cDNA clone HM11I22
3-PRIME, mRNA sequence
Length = 596
Score = 73.8 bits (37), Expect = 5e-012
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 291 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 350
Query: 379 atgctccccatgcagctcccggccagagtcttg 411
|||| || ||||||||||||||||| ||||||
Sbjct: 351 atgccgccgatgcagctcccggccagggtcttg 383
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 197 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 256
Query: 285 cat 287
|||
Sbjct: 257 cat 259
>gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I10 5', mRNA sequence
Length = 509
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||||| |||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 355 gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 296
Query: 285 cat 287
|||
Sbjct: 295 cat 293
>gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_D08 5', mRNA sequence
Length = 383
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 176 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 117
Query: 285 cat 287
|||
Sbjct: 116 cat 114
Score = 60.0 bits (30), Expect = 8e-008
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 82 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 23
Query: 379 atgctccccatgcagctcccgg 400
|||| || |||||||||||||
Sbjct: 22 atgccgccgatgcagctcccgg 1
>gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 5', mRNA sequence
Length = 627
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||||| |||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 384 gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 325
Query: 285 cat 287
|||
Sbjct: 324 cat 322
>gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. vulgare cDNA clone HM07M03
3-PRIME, mRNA sequence
Length = 552
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgttc 284
|||||||||| |||||||||||||||| || |||||||| || ||||||| ||||| ||
Sbjct: 377 gagggtgttggcgatgtcgatgacgaatcgatacctgacgtcagccttggcaaggcgctc 436
Query: 285 cat 287
|||
Sbjct: 437 cat 439
Score = 60.0 bits (30), Expect = 8e-008
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||||||| || |||| |||||||| || |||| ||||| ||||||||| ||||||||
Sbjct: 471 tcgatgtctgccgtcacgccgtgcttcgccgcgaggtccagcatctcctgggtgtccctc 530
Query: 379 atgctccccatgcagctcccgg 400
|||| || |||||||||||||
Sbjct: 531 atgccgccgatgcagctcccgg 552
>gb|BJ549631.1|BJ549631 BJ549631 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 3', mRNA sequence
Length = 587
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcg 281
|||||||||||| |||||||||||||| || |||||||| || ||||||| |||||
Sbjct: 527 gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcg 583
>gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
5-PRIME, mRNA sequence
Length = 573
Score = 56.0 bits (28), Expect = 1e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 360 catctcctgcgtgtccctgatgctccccatgcagctcccggccagagtcttg 411
||||||||| |||||||| |||| || ||||||||||||||||| ||||||
Sbjct: 572 catctcctgggtgtccctcatgccgccgatgcagctcccggccagggtcttg 521
>gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D17 5', mRNA sequence
Length = 441
Score = 54.0 bits (27), Expect = 5e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 225 gagggtgttgccgatgtcgatgacgaagcggtacctgac 263
|||||||||||| |||||||||||||| || ||||||||
Sbjct: 345 gagggtgttgccaatgtcgatgacgaatcgatacctgac 307
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 52.0 bits (26), Expect = 2e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 509 cgtacctgcccgggcggccgctcgaa 534
||||||||||||||||||||||||||
Sbjct: 340 cgtacctgcccgggcggccgctcgaa 365
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgctcgaa 438
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01P08u 3', mRNA sequence
Length = 248
Score = 44.1 bits (22), Expect = 0.005
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 236 cgatgtcgatgacgaagcggtacct 260
||| |||||||||||||||||||||
Sbjct: 174 cgangtcgatgacgaagcggtacct 198
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 236 cgatgtcgatgacgaagcggta 257
||||||||||||||||||||||
Sbjct: 224 cgatgtcgatgacgaagcggta 203
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 236 cgatgtcgatgacgaagcggta 257
||||||||||||||||||||||
Sbjct: 447 cgatgtcgatgacgaagcggta 426
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 236 cgatgtcgatgacgaagcggta 257
||||||||||||||||||||||
Sbjct: 108 cgatgtcgatgacgaagcggta 129
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 512 acctgcccgggcggccgctcga 533
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 240 gtcgatgacgaagcggtacct 260
|||||||||||||||||||||
Sbjct: 246 gtcgatgacgaagcggtacct 226
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 240 gtcgatgacgaagcggtacct 260
|||||||||||||||||||||
Sbjct: 372 gtcgatgacgaagcggtacct 392
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 240 gtcgatgacgaagcggtacct 260
|||||||||||||||||||||
Sbjct: 490 gtcgatgacgaagcggtacct 470
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 240 gtcgatgacgaagcggtacct 260
|||||||||||||||||||||
Sbjct: 294 gtcgatgacgaagcggtacct 314
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,650
Number of Sequences: 312970
Number of extensions: 51650
Number of successful extensions: 12557
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12466
Number of HSP's gapped (non-prelim): 91
length of query: 534
length of database: 175,134,539
effective HSP length: 19
effective length of query: 515
effective length of database: 169,188,109
effective search space: 87131876135
effective search space used: 87131876135
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)