BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3203826.2.1
         (594 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV058907.1|CV058907  BNEL42c7 Barley EST endosperm librar...    46   0.001

>gb|CV058907.1|CV058907 BNEL42c7 Barley EST endosperm library Hordeum vulgare subsp.
           vulgare cDNA clone BNEL42c7 5' similar to beta-expansin,
           mRNA sequence
          Length = 502

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 359 tcaccgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcat 418
           |||||||||| ||||||| | |||||||||| || |  ||||| || | |||||||||||
Sbjct: 231 tcaccgccacgccgcctggctggtacgccacgccggggttccacccggtaggtatggcat 172

              
Query: 419 tgc 421
           |||
Sbjct: 171 tgc 169



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,166
Number of Sequences: 312970
Number of extensions: 58166
Number of successful extensions: 16042
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16039
Number of HSP's gapped (non-prelim): 3
length of query: 594
length of database: 175,134,539
effective HSP length: 19
effective length of query: 575
effective length of database: 169,188,109
effective search space: 97283162675
effective search space used: 97283162675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)