BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421990.1|BE421990 HWM018cC.09r ITEC HWM Barley Leaf Li... 42 0.032
gb|AL500951.1|AL500951 AL500951 Hordeum vulgare Barke roots... 42 0.032
gb|AL507307.1|AL507307 AL507307 Hordeum vulgare Barke devel... 42 0.032
gb|AL510285.1|AL510285 AL510285 Hordeum vulgare Barke devel... 42 0.032
gb|AL510309.1|AL510309 AL510309 Hordeum vulgare Barke devel... 42 0.032
gb|AL511044.1|AL511044 AL511044 Hordeum vulgare Barke devel... 42 0.032
gb|AL511217.1|AL511217 AL511217 Hordeum vulgare Barke devel... 42 0.032
gb|AL512258.1|AL512258 AL512258 Hordeum vulgare Barke devel... 42 0.032
gb|BF625849.1|BF625849 HVSMEa0013N12f Hordeum vulgare seedl... 42 0.032
gb|BE195509.2|BE195509 HVSMEh0089E04f Hordeum vulgare 5-45 ... 42 0.032
gb|BE602293.2|BE602293 HVSMEh0098F22f Hordeum vulgare 5-45 ... 42 0.032
gb|BF066110.2|BF066110 HV_CEb0014N24f Hordeum vulgare seedl... 42 0.032
gb|BG416043.2|BG416043 HVSMEk0009J01f Hordeum vulgare testa... 42 0.032
gb|BE214467.3|BE214467 HV_CEb0003I16f Hordeum vulgare seedl... 42 0.032
gb|BM101441.1|BM101441 EBpi01_SQ003_N19_R pistil, 1 DPA, no... 42 0.032
gb|AV914568.1|AV914568 AV914568 K. Sato unpublished cDNA li... 42 0.032
gb|AV915596.1|AV915596 AV915596 K. Sato unpublished cDNA li... 42 0.032
gb|AV919649.1|AV919649 AV919649 K. Sato unpublished cDNA li... 42 0.032
gb|AV919851.1|AV919851 AV919851 K. Sato unpublished cDNA li... 42 0.032
gb|AV920247.1|AV920247 AV920247 K. Sato unpublished cDNA li... 42 0.032
gb|AV920702.1|AV920702 AV920702 K. Sato unpublished cDNA li... 42 0.032
gb|AV927533.1|AV927533 AV927533 K. Sato unpublished cDNA li... 42 0.032
gb|AV927654.1|AV927654 AV927654 K. Sato unpublished cDNA li... 42 0.032
gb|AV933508.1|AV933508 AV933508 K. Sato unpublished cDNA li... 42 0.032
gb|AV935956.1|AV935956 AV935956 K. Sato unpublished cDNA li... 42 0.032
gb|AJ432039.1|AJ432039 AJ432039 S00002 Hordeum vulgare subs... 42 0.032
gb|BJ448367.1|BJ448367 BJ448367 K. Sato unpublished cDNA li... 42 0.032
gb|BJ451776.1|BJ451776 BJ451776 K. Sato unpublished cDNA li... 42 0.032
gb|BJ456085.1|BJ456085 BJ456085 K. Sato unpublished cDNA li... 42 0.032
gb|BJ459272.1|BJ459272 BJ459272 K. Sato unpublished cDNA li... 42 0.032
gb|BJ466442.1|BJ466442 BJ466442 K. Sato unpublished cDNA li... 42 0.032
gb|BJ466944.1|BJ466944 BJ466944 K. Sato unpublished cDNA li... 42 0.032
gb|BJ466984.1|BJ466984 BJ466984 K. Sato unpublished cDNA li... 42 0.032
gb|BJ468528.1|BJ468528 BJ468528 K. Sato unpublished cDNA li... 42 0.032
gb|BJ469093.1|BJ469093 BJ469093 K. Sato unpublished cDNA li... 42 0.032
gb|BJ472492.1|BJ472492 BJ472492 K. Sato unpublished cDNA li... 42 0.032
gb|BJ474038.1|BJ474038 BJ474038 K. Sato unpublished cDNA li... 42 0.032
gb|BJ474309.1|BJ474309 BJ474309 K. Sato unpublished cDNA li... 42 0.032
gb|BQ467359.1|BQ467359 HS03I06r HS Hordeum vulgare subsp. v... 42 0.032
gb|BQ470646.1|BQ470646 HX03J16r HX Hordeum vulgare subsp. v... 42 0.032
gb|BQ657075.1|BQ657075 HA09M19u HA Hordeum vulgare subsp. v... 42 0.032
gb|BQ657755.1|BQ657755 HA07B16u HA Hordeum vulgare subsp. v... 42 0.032
gb|BQ660581.1|BQ660581 HI04F01u HI Hordeum vulgare subsp. v... 42 0.032
gb|BQ664415.1|BQ664415 HV03D10u HV Hordeum vulgare subsp. v... 42 0.032
gb|BM096505.2|BM096505 EBma03_SQ001_O14_R maternal, 8 DPA, ... 42 0.032
gb|BM373250.2|BM373250 EBma04_SQ003_L09_R maternal, 10 DPA,... 42 0.032
gb|BM100724.2|BM100724 EBpi01_SQ001_D03_R pistil, 1 DPA, no... 42 0.032
gb|BM099074.2|BM099074 EBpi05_SQ002_N24_R pistil, 8 DPA, no... 42 0.032
gb|BM371087.2|BM371087 EBro04_SQ003_H04_R root, 3 week, sal... 42 0.032
gb|BM370407.2|BM370407 EBro08_SQ004_C03_R root, 3 week, dro... 42 0.032
gb|BQ758259.1|BQ758259 EBma03_SQ001_O15_R maternal, 8 DPA, ... 42 0.032
gb|BQ759479.1|BQ759479 EBpi01_SQ004_K15_R pistil, 1 DPA, no... 42 0.032
gb|BU975386.1|BU975386 HB31F06r BC Hordeum vulgare subsp. v... 42 0.032
gb|BU982860.1|BU982860 HA27N07r HA Hordeum vulgare subsp. v... 42 0.032
gb|BU983552.1|BU983552 HA30C02r HA Hordeum vulgare subsp. v... 42 0.032
gb|BU994256.1|BU994256 HM06G10r HM Hordeum vulgare subsp. v... 42 0.032
gb|CA010314.1|CA010314 HT10K18u HT Hordeum vulgare subsp. v... 42 0.032
gb|CA014198.1|CA014198 HT10K18r HT Hordeum vulgare subsp. v... 42 0.032
gb|CA022053.1|CA022053 HZ42A11r HZ Hordeum vulgare subsp. v... 42 0.032
gb|CA027037.1|CA027037 HZ57L11r HZ Hordeum vulgare subsp. v... 42 0.032
gb|CB859800.1|CB859800 HI11K07w HI Hordeum vulgare subsp. v... 42 0.032
gb|CB877447.1|CB877447 HP04P06T HP Hordeum vulgare subsp. v... 42 0.032
gb|CB880391.1|CB880391 HM06G10w HM Hordeum vulgare subsp. v... 42 0.032
gb|CV064181.1|CV064181 BNEL99a1 Barley EST endosperm librar... 42 0.032
gb|CK124720.1|CK124720 BES1824110c11 BES1824 Hordeum vulgar... 42 0.032
>gb|BE421990.1|BE421990 HWM018cC.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM018cC.09, mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 260 gcaggctcgtcatcctcgtcg 240
>gb|AL500951.1|AL500951 AL500951 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02I02u 3', mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 307 gcaggctcgtcatcctcgtcg 327
>gb|AL507307.1|AL507307 AL507307 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01M18V 5',
mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 289 gcaggctcgtcatcctcgtcg 309
>gb|AL510285.1|AL510285 AL510285 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04H13u 3',
mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 290 gcaggctcgtcatcctcgtcg 310
>gb|AL510309.1|AL510309 AL510309 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04I16u 3',
mRNA sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 395 gcaggctcgtcatcctcgtcg 415
>gb|AL511044.1|AL511044 AL511044 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06M22u 3',
mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 395 gcaggctcgtcatcctcgtcg 415
>gb|AL511217.1|AL511217 AL511217 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07F22u 3',
mRNA sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 317 gcaggctcgtcatcctcgtcg 337
>gb|AL512258.1|AL512258 AL512258 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10P05u 3',
mRNA sequence
Length = 391
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 316 gcaggctcgtcatcctcgtcg 336
>gb|BF625849.1|BF625849 HVSMEa0013N12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013N12f, mRNA sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 291 gcaggctcgtcatcctcgtcg 311
>gb|BE195509.2|BE195509 HVSMEh0089E04f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089E04f, mRNA sequence
Length = 915
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 436 gcaggctcgtcatcctcgtcg 416
>gb|BE602293.2|BE602293 HVSMEh0098F22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098F22f, mRNA sequence
Length = 565
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 554 gcaggctcgtcatcctcgtcg 534
>gb|BF066110.2|BF066110 HV_CEb0014N24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014N24f, mRNA sequence
Length = 930
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 462 gcaggctcgtcatcctcgtcg 442
>gb|BG416043.2|BG416043 HVSMEk0009J01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009J01f, mRNA sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 92 gcaggctcgtcatcctcgtcg 72
>gb|BE214467.3|BE214467 HV_CEb0003I16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003I16f, mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 300 gcaggctcgtcatcctcgtcg 280
>gb|BM101441.1|BM101441 EBpi01_SQ003_N19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_N19 5', mRNA sequence
Length = 402
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 51 gcaggctcgtcatcctcgtcg 31
>gb|AV914568.1|AV914568 AV914568 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p22 5', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 210 gcaggctcgtcatcctcgtcg 190
>gb|AV915596.1|AV915596 AV915596 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15d22 5', mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 315 gcaggctcgtcatcctcgtcg 295
>gb|AV919649.1|AV919649 AV919649 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p22 3', mRNA sequence
Length = 517
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 255 gcaggctcgtcatcctcgtcg 275
>gb|AV919851.1|AV919851 AV919851 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7o14 3', mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 309 gcaggctcgtcatcctcgtcg 329
>gb|AV920247.1|AV920247 AV920247 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9o23 3', mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 263 gcaggctcgtcatcctcgtcg 283
>gb|AV920702.1|AV920702 AV920702 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15d22 3', mRNA sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 311 gcaggctcgtcatcctcgtcg 331
>gb|AV927533.1|AV927533 AV927533 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2h13 3', mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 263 gcaggctcgtcatcctcgtcg 283
>gb|AV927654.1|AV927654 AV927654 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3a19 3', mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 191 gcaggctcgtcatcctcgtcg 211
>gb|AV933508.1|AV933508 AV933508 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7d14 5', mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 503 gcaggctcgtcatcctcgtcg 483
>gb|AV935956.1|AV935956 AV935956 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7d14 3', mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 333 gcaggctcgtcatcctcgtcg 353
>gb|AJ432039.1|AJ432039 AJ432039 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200011A07F1, mRNA sequence
Length = 334
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 55 gcaggctcgtcatcctcgtcg 35
>gb|BJ448367.1|BJ448367 BJ448367 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19l01 5', mRNA sequence
Length = 453
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 274 gcaggctcgtcatcctcgtcg 254
>gb|BJ451776.1|BJ451776 BJ451776 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36g04 5', mRNA sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 214 gcaggctcgtcatcctcgtcg 194
>gb|BJ456085.1|BJ456085 BJ456085 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19l01 3', mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 248 gcaggctcgtcatcctcgtcg 268
>gb|BJ459272.1|BJ459272 BJ459272 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36g04 3', mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 248 gcaggctcgtcatcctcgtcg 268
>gb|BJ466442.1|BJ466442 BJ466442 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32c07 3', mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 307 gcaggctcgtcatcctcgtcg 327
>gb|BJ466944.1|BJ466944 BJ466944 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35c11 3', mRNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 313 gcaggctcgtcatcctcgtcg 333
>gb|BJ466984.1|BJ466984 BJ466984 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35g03 3', mRNA sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 250 gcaggctcgtcatcctcgtcg 270
>gb|BJ468528.1|BJ468528 BJ468528 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d11 3', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 335 gcaggctcgtcatcctcgtcg 355
>gb|BJ469093.1|BJ469093 BJ469093 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13b12 5', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 490 gcaggctcgtcatcctcgtcg 470
>gb|BJ472492.1|BJ472492 BJ472492 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34n19 5', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 491 gcaggctcgtcatcctcgtcg 471
>gb|BJ474038.1|BJ474038 BJ474038 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18g23 3', mRNA sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 249 gcaggctcgtcatcctcgtcg 269
>gb|BJ474309.1|BJ474309 BJ474309 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13b12 3', mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 311 gcaggctcgtcatcctcgtcg 331
>gb|BQ467359.1|BQ467359 HS03I06r HS Hordeum vulgare subsp. vulgare cDNA clone HS03I06
5-PRIME, mRNA sequence
Length = 565
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 348 gcaggctcgtcatcctcgtcg 368
>gb|BQ470646.1|BQ470646 HX03J16r HX Hordeum vulgare subsp. vulgare cDNA clone HX03J16
5-PRIME, mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 443 gcaggctcgtcatcctcgtcg 423
>gb|BQ657075.1|BQ657075 HA09M19u HA Hordeum vulgare subsp. vulgare cDNA clone HA09M19
3-PRIME, mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 286 gcaggctcgtcatcctcgtcg 306
>gb|BQ657755.1|BQ657755 HA07B16u HA Hordeum vulgare subsp. vulgare cDNA clone HA07B16
3-PRIME, mRNA sequence
Length = 479
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 270 gcaggctcgtcatcctcgtcg 290
>gb|BQ660581.1|BQ660581 HI04F01u HI Hordeum vulgare subsp. vulgare cDNA clone HI04F01
3-PRIME, mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 286 gcaggctcgtcatcctcgtcg 306
>gb|BQ664415.1|BQ664415 HV03D10u HV Hordeum vulgare subsp. vulgare cDNA clone HV03D10
3-PRIME, mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 286 gcaggctcgtcatcctcgtcg 306
>gb|BM096505.2|BM096505 EBma03_SQ001_O14_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_O14 5', mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 190 gcaggctcgtcatcctcgtcg 170
>gb|BM373250.2|BM373250 EBma04_SQ003_L09_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_L09 5', mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 487 gcaggctcgtcatcctcgtcg 467
>gb|BM100724.2|BM100724 EBpi01_SQ001_D03_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ001_D03 5', mRNA sequence
Length = 457
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 177 gcaggctcgtcatcctcgtcg 157
>gb|BM099074.2|BM099074 EBpi05_SQ002_N24_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_N24 5', mRNA sequence
Length = 330
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 221 gcaggctcgtcatcctcgtcg 201
>gb|BM371087.2|BM371087 EBro04_SQ003_H04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_H04 5', mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 256 gcaggctcgtcatcctcgtcg 236
>gb|BM370407.2|BM370407 EBro08_SQ004_C03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_C03 5', mRNA sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtcg 354
|||||||||||||||||||||
Sbjct: 462 gcaggctcgtcatcctcgtcg 442
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,034
Number of Sequences: 312970
Number of extensions: 94034
Number of successful extensions: 27399
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27334
Number of HSP's gapped (non-prelim): 65
length of query: 938
length of database: 175,134,539
effective HSP length: 19
effective length of query: 919
effective length of database: 169,188,109
effective search space: 155483872171
effective search space used: 155483872171
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)