BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow st... 319 1e-085
gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. v... 167 1e-039
gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. v... 161 7e-038
gb|AW983378.3|AW983378 HVSMEg0010G22f Hordeum vulgare pre-a... 147 1e-033
gb|BQ764302.1|BQ764302 EBan01_SQ005_P07_R anther, yellow st... 111 6e-023
gb|BM442148.2|BM442148 EBan01_SQ002_F15_R anther, yellow st... 105 4e-021
gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachi... 64 1e-008
gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachi... 62 5e-008
gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA li... 60 2e-007
gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. v... 60 2e-007
gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. v... 54 1e-005
gb|BF259547.3|BF259547 HVSMEf0019J23f Hordeum vulgare seedl... 44 0.011
gb|BI959049.1|BI959049 HVSMEn0017O16f Hordeum vulgare rachi... 42 0.044
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 40 0.18
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 40 0.18
dbj|AB019525.1| Hordeum vulgare hvnas7 mRNA for nicotianami... 40 0.18
dbj|AB011264.1| Hordeum vulgare hvnas3 mRNA for nicochianam... 40 0.18
dbj|AB011265.1| Hordeum vulgare hvnas2 mRNA for nicochianam... 40 0.18
dbj|AB011266.1| Hordeum vulgare hvnas4 mRNA for nicotianami... 40 0.18
>gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C23 5', mRNA sequence
Length = 356
Score = 319 bits (161), Expect = 1e-085
Identities = 239/265 (90%)
Strand = Plus / Plus
Query: 660 aggaccagatcatgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcaga 719
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9 aggaccagatcatgcaggtcaccgtcgccttcaaccacttcgggagaggcctcgtgcaga 68
Query: 720 ggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcactggc 779
| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 69 gaatgccaaggtgccgatggggattcttccacgtggtgaacaacgactacacccactggc 128
Query: 780 tcatgtacgccatcggcggcagcaaggcccccaccatcatcagccagggcaaccgctaca 839
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 129 tcatgtacgccatcggcggcagcaagaacccgaccatcatcagccaggggaaccgctaca 188
Query: 840 tcgcgccgcccaaccttgccgcgaagcaggtcaccaagcagcatgacacgccggagtccg 899
| |||||||| ||||| || ||||||| | ||||||||| || | | || ||||| | |
Sbjct: 189 ttgcgccgccgaacctggcggcgaagctgatcaccaagcggctgggcgcgtcggaggcgg 248
Query: 900 tgtggaagaactgggtgtggcactc 924
||||||||||||||||||||||||
Sbjct: 249 agtggaagaactgggtgtggcactc 273
>gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
5-PRIME, mRNA sequence
Length = 585
Score = 167 bits (84), Expect = 1e-039
Identities = 153/176 (86%)
Strand = Plus / Plus
Query: 671 atgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccaagg 730
|||||| ||||||||||||||||||||||||||| |||||||||||| | ||||| |
Sbjct: 310 atgcaggtcaccgtcgccttcaaccacttcggcaagggcctcgtgcagcgcatgccgcgc 369
Query: 731 tgccgctggggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgcc 790
||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct: 370 tgccgcttcggcttcttccacgtcgtgaacaacgactacacgcactggaagatgtacgcc 429
Query: 791 atcggcggcagcaaggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
|||||||||| | | ||||||||||||||||||||| ||||| | |||||||||
Sbjct: 430 atcggcggcaaccgcgaccccaccatcatcagccagggaaaccggttcatcgcgcc 485
Score = 63.9 bits (32), Expect = 1e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 551 gacggcctcatcgacgtcatcgccaagtccactggcgtcaccatctccaactgccacctc 610
|||||||||||||||||| || | ||||| | | ||||| |||||||| ||||| ||
Sbjct: 187 gacggcctcatcgacgtcgtcagcggctccaccgccatcaccgtctccaacagccacttc 246
Query: 611 accaaccacaacgacgtcatgctcttcagctccagc 646
||||||||| || |||||||||||||| || |||||
Sbjct: 247 accaaccacgaccacgtcatgctcttcggcgccagc 282
>gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F03
5-PRIME, mRNA sequence
Length = 509
Score = 161 bits (81), Expect = 7e-038
Identities = 147/169 (86%)
Strand = Plus / Plus
Query: 678 tcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgct 737
||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||
Sbjct: 13 tcaccgtcgccttcaaccacttcggcaagggcctcgtgcagcgcatgccgcgctgccgct 72
Query: 738 ggggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcg 797
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 73 tcggcttcttccacgtcgtgaacaacgactacacgcactggaagatgtacgccatcggcg 132
Query: 798 gcagcaaggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
||| | | ||||||||||||||||||||| ||||| | |||||||||
Sbjct: 133 gcaaccgcgaccccaccatcatcagccagggaaaccggttcatcgcgcc 181
>gb|AW983378.3|AW983378 HVSMEg0010G22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010G22f, mRNA sequence
Length = 809
Score = 147 bits (74), Expect = 1e-033
Identities = 200/242 (82%)
Strand = Plus / Plus
Query: 28 ggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaa 87
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 277 ggcgacgaacccgatcgaccggtgctggcgctgccgcaaggactgggcgacggaccggca 336
Query: 88 gcgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaa 147
||| ||||| || ||||||||||| ||||| ||| |||||||||| || ||||||
Sbjct: 337 gcggctggcccgctgcgccaagggcttcggccgcggggccaccggcggcctccacggcaa 396
Query: 148 gttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgct 207
| ||||| | ||||||||| | |||||| ||| | |||||||| |||||||||||
Sbjct: 397 gatctacatcgtgacggacccaagcgacgaagacttcaccaacccgcgtcccggcacgct 456
Query: 208 ccggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcat 267
|||||||||||| |||| | ||||| ||||||||| |||||||| | |||||||||
Sbjct: 457 ccggtggggcgtggtccaactggagcccttgtggatcatcttcgccagggacatgatcat 516
Query: 268 ca 269
||
Sbjct: 517 ca 518
>gb|BQ764302.1|BQ764302 EBan01_SQ005_P07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_P07 5', mRNA sequence
Length = 450
Score = 111 bits (56), Expect = 6e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 28 ggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaa 87
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 278 ggcgacgaacccgatcgaccggtgctggcgctgccgcaaggactgggcgacggaccggca 337
Query: 88 gcgcctggcgcggtgcgccaaggg 111
||| ||||| || |||||||||||
Sbjct: 338 gcggctggcccgctgcgccaaggg 361
>gb|BM442148.2|BM442148 EBan01_SQ002_F15_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_F15 5', mRNA sequence
Length = 319
Score = 105 bits (53), Expect = 4e-021
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 28 ggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaa 87
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 239 ggcgacgaacccgatcgaccggtgctggcgctgccgcaaggactgggcgacggaccggca 298
Query: 88 gcgcctggcgcggtgcgccaa 108
||| ||||| || ||||||||
Sbjct: 299 gcggctggcccgctgcgccaa 319
>gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025E05f, mRNA sequence
Length = 663
Score = 63.9 bits (32), Expect = 1e-008
Identities = 140/176 (79%)
Strand = Plus / Plus
Query: 671 atgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccaagg 730
|||||| ||||| | || |||||||| ||||| ||| ||| | |||||||||||||||
Sbjct: 199 atgcaggtcaccatagctttcaaccatttcggggaagggctcatccagaggatgccaagg 258
Query: 731 tgccgctggggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgcc 790
||| | || | |||||| ||||| ||||| |||||||| |||||| |||||||||
Sbjct: 259 tgcaggcatggttacttccatgtggtgaacaatgactacactcactgggagatgtacgcc 318
Query: 791 atcggcggcagcaaggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
||||| || ||| | || ||||||| ||||||||| ||||||||| |||||||
Sbjct: 319 atcggaggaagcgccgagccgaccatcaacagccaggggaaccgctacctcgcgcc 374
Score = 50.1 bits (25), Expect = 2e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 499 cttcggctccaccaacgtgtggctggaccacctctccctctccaactgccaggacggcct 558
||||||| ||| | |||| ||| | |||||| |||||||||||||||| ||||||||
Sbjct: 27 cttcggcgccagccacgtctgggtcgaccactgctccctctccaactgcgccgacggcct 86
Query: 559 catcgacgtcatc 571
|||||||| ||||
Sbjct: 87 catcgacgccatc 99
>gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018A17f, mRNA sequence
Length = 632
Score = 61.9 bits (31), Expect = 5e-008
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 454 ccacttcggctggcgcaccgtctccgacggcgacggcatcaccgtcttcggctccaccaa 513
||||| ||| ||||||||| || |||||||||||| | || | |||||||| ||| | |
Sbjct: 428 ccactacgggtggcgcaccatcgccgacggcgacgccgtctncatcttcggcgccagcca 487
Query: 514 cgtgtggctggaccacctctccctctccaactgccaggacggcctcatcgacgtcatc 571
||| ||| | |||||| |||||||||||||||| ||||| |||||||||| ||||
Sbjct: 488 cgtctgggtcgaccactgctccctctccaactgcgccgacgggctcatcgacgccatc 545
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 cgtcatccagatcgagccgctgtggatcaccttc 250
|||||||||| ||||||||||||||||| ||||
Sbjct: 197 cgtcatccaggacgagccgctgtggatcatcttc 230
Score = 42.1 bits (21), Expect = 0.044
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 362 cagttcgtcaacaacgtcatcatccacaacatccacatcaacgac 406
|||| ||||| |||||||||||||||| | |||||||| |||||
Sbjct: 342 cagtacgtcaccaacgtcatcatccacggcctccacatccacgac 386
Score = 40.1 bits (20), Expect = 0.18
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 301 caagaccattgacggccgcggcgtgcaggtgcgcatcaccaacggcgc 348
||||||||| ||||||||||||| | |||| |||| ||||||||||
Sbjct: 281 caagaccatcgacggccgcggcgccaacgtgcacatcgccaacggcgc 328
>gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14d11 5', mRNA sequence
Length = 554
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||| ||||| ||||| |||||||| |||||| |||||||||||||| || |||
Sbjct: 44 cttccatgtggtgaacaatgactacactcactgggagatgtacgccatcggaggaagcgc 103
Query: 805 ggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
| || ||||||| ||||||||| ||||||||| |||||||
Sbjct: 104 cgagccgaccatcaacagccaggggaaccgctacctcgcgcc 145
>gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. vulgare cDNA clone HS05C08
5-PRIME, mRNA sequence
Length = 521
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
|||||| ||||| ||||| |||||||| |||||| |||||||||||||| || |||
Sbjct: 30 cttccatgtggtgaacaatgactacactcactgggagatgtacgccatcggaggaagcgc 89
Query: 805 ggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
| || ||||||| ||||||||| ||||||||| |||||||
Sbjct: 90 cgagccgaccatcaacagccaggggaaccgctacctcgcgcc 131
>gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
3-PRIME, mRNA sequence
Length = 490
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 788 gccatcggcggcagcaaggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
||||||||||||| | | ||||||||||||||||||||| ||||| | |||||||||
Sbjct: 490 gccatcggcggcaaccccgaccccaccatcatcagccagggaaaccggttcatcgcgcc 432
>gb|BF259547.3|BF259547 HVSMEf0019J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019J23f, mRNA sequence
Length = 714
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 171 ccgacgacgacgtggtgaacccgcgc 196
|||||||||||||||||||| |||||
Sbjct: 274 ccgacgacgacgtggtgaactcgcgc 299
>gb|BI959049.1|BI959049 HVSMEn0017O16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017O16f, mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.044
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 362 cagttcgtcaacaacgtcatcatccacaacatccacatcaacgac 406
|||| ||||| |||||||||||||||| | |||||||| |||||
Sbjct: 63 cagtacgtcaccaacgtcatcatccacggcctccacatccacgac 107
>gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H06_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 907
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110H09_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 917
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H05_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 864
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F06_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 911
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109E06_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 916
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H02_T3.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 927
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C11_SK.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 865
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108A03_SK.ab1 similar to DNA-(apurinic or
apyrimidinic site) lyase,Cystathionine
beta-lyase,cystathionine beta-synthase,Nitric-oxide
synthase,Cysteine lyase,Cysteine synthase,Cystathionine
beta-synthase,, mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC106B05_T3.ab1 similar to (AC007369) Sugar transporter
[Arabidopsis thaliana], mRNA sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgac 22
||||||||||||||||||||
Sbjct: 13 gaattcgcggccgcgtcgac 32
>dbj|AB019525.1| Hordeum vulgare hvnas7 mRNA for nicotianamine synthase 7, complete
cds
Length = 1332
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 ccgacgacgacgtggtgaac 190
||||||||||||||||||||
Sbjct: 877 ccgacgacgacgtggtgaac 896
>dbj|AB011264.1| Hordeum vulgare hvnas3 mRNA for nicochianamine synthase 3, complete
cds
Length = 1293
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 ccgacgacgacgtggtgaac 190
||||||||||||||||||||
Sbjct: 835 ccgacgacgacgtggtgaac 854
>dbj|AB011265.1| Hordeum vulgare hvnas2 mRNA for nicochianamine synthase 2, complete
cds
Length = 1324
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 ccgacgacgacgtggtgaac 190
||||||||||||||||||||
Sbjct: 836 ccgacgacgacgtggtgaac 855
>dbj|AB011266.1| Hordeum vulgare hvnas4 mRNA for nicotianamine Synthase 4, complete
cds
Length = 1195
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 ccgacgacgacgtggtgaac 190
||||||||||||||||||||
Sbjct: 856 ccgacgacgacgtggtgaac 875
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,815
Number of Sequences: 312970
Number of extensions: 224815
Number of successful extensions: 69267
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69219
Number of HSP's gapped (non-prelim): 45
length of query: 1273
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1254
effective length of database: 169,188,109
effective search space: 212161888686
effective search space used: 212161888686
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)