BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 66 2e-009
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 66 2e-009
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 66 2e-009
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 66 2e-009
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 66 2e-009
gb|BQ660177.1|BQ660177 HI01F04w HI Hordeum vulgare subsp. v... 54 8e-006
gb|CB876272.1|CB876272 HX10M17w HX Hordeum vulgare subsp. v... 54 8e-006
gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-a... 52 3e-005
gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. v... 52 3e-005
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 52 3e-005
gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. v... 52 3e-005
gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. v... 52 3e-005
gb|BF254118.2|BF254118 HVSMEf0003B05f Hordeum vulgare seedl... 46 0.002
gb|BF258244.3|BF258244 HVSMEf0015D10f Hordeum vulgare seedl... 46 0.002
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 46 0.002
gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke devel... 42 0.032
gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke devel... 42 0.032
gb|AL507273.1|AL507273 AL507273 Hordeum vulgare Barke devel... 42 0.032
gb|BM099596.2|BM099596 EBes01_SQ003_L06_R embryo sac, 4-6 D... 42 0.032
gb|BU979798.1|BU979798 HA17F17r HA Hordeum vulgare subsp. v... 42 0.032
gb|BU989656.1|BU989656 HF22F12r HF Hordeum vulgare subsp. v... 42 0.032
gb|CK122183.1|CK122183 BES1824101p05 BES1824 Hordeum vulgar... 42 0.032
gb|BQ665571.1|BQ665571 HX04D11u HX Hordeum vulgare subsp. v... 38 0.50
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 644 tcgagtacgccggcaagaacaacaagaccatggctgt 680
|||||||| ||||||||||||||||||||||||||||
Sbjct: 307 tcgagtactccggcaagaacaacaagaccatggctgt 343
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
|||||||||| |||||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 193 tcaaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcc 252
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 253 tgctctgctccga 265
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||| | ||||||||||||||||||||
Sbjct: 19 ccaccaacggcctccgcatcaagtcgtacgagga 52
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 644 tcgagtacgccggcaagaacaacaagaccatggctgt 680
|||||||| ||||||||||||||||||||||||||||
Sbjct: 400 tcgagtactccggcaagaacaacaagaccatggctgt 436
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
|||||||||| |||||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 286 tcaaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcc 345
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 346 tgctctgctccga 358
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||| | ||||||||||||||||||||
Sbjct: 112 ccaccaacggcctccgcatcaagtcgtacgagga 145
Score = 40.1 bits (20), Expect = 0.13
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 250 acctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaag 309
||||| ||||| || || ||||||||| | ||| |||| || | |||||||| ||||||
Sbjct: 9 acctgcggcccaggccacggcatcagtattggcagcctcgggaggtacaaggacgagaag 68
Query: 310 gacgtgagcgac 321
||||||| ||||
Sbjct: 69 gacgtgaccgac 80
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 644 tcgagtacgccggcaagaacaacaagaccatggctgt 680
|||||||| ||||||||||||||||||||||||||||
Sbjct: 203 tcgagtactccggcaagaacaacaagaccatggctgt 239
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
|||||||||| |||||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 89 tcaaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcc 148
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 149 tgctctgctccga 161
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 644 tcgagtacgccggcaagaacaacaagaccatggctgt 680
|||||||| ||||||||||||||||||||||||||||
Sbjct: 282 tcgagtactccggcaagaacaacaagaccatggctgt 318
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
|||||||||| |||||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 168 tcaaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcc 227
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 228 tgctctgctccga 240
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 367 cgcatcaagtcgtacgagga 386
||||||||||||||||||||
Sbjct: 8 cgcatcaagtcgtacgagga 27
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 644 tcgagtacgccggcaagaacaacaagaccatggctgt 680
|||||||| ||||||||||||||||||||||||||||
Sbjct: 342 tcgagtactccggcaagaacaacaagaccatggctgt 378
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
|||||||||| |||||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 228 tcaaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcc 287
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 288 tgctctgctccga 300
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||| | ||||||||||||||||||||
Sbjct: 54 ccaccaacggcctccgcatcaagtcgtacgagga 87
>gb|BQ660177.1|BQ660177 HI01F04w HI Hordeum vulgare subsp. vulgare cDNA clone HI01F04
3-PRIME, mRNA sequence
Length = 618
Score = 54.0 bits (27), Expect = 8e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 445 gtggccaaccccatcatcatcgaccag 471
|||||||||||||||||||||||||||
Sbjct: 505 gtggccaaccccatcatcatcgaccag 479
>gb|CB876272.1|CB876272 HX10M17w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M17
3-PRIME, mRNA sequence
Length = 638
Score = 54.0 bits (27), Expect = 8e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 445 gtggccaaccccatcatcatcgaccag 471
|||||||||||||||||||||||||||
Sbjct: 504 gtggccaaccccatcatcatcgaccag 478
>gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015N01f, mRNA sequence
Length = 576
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtac 474
||||||||||||||||||||||||||
Sbjct: 165 ccaaccccatcatcatcgaccagtac 190
>gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D02
5-PRIME, mRNA sequence
Length = 650
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtac 474
||||||||||||||||||||||||||
Sbjct: 489 ccaaccccatcatcatcgaccagtac 514
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 353 ccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||| | ||||||||||||||||||||
Sbjct: 219 ccaccaacggcctccgcatcaagtcgtacgagga 252
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 295 tacaaggatgagaaggacgtgagcgac 321
|||||||| ||||||||||||| ||||
Sbjct: 161 tacaaggacgagaaggacgtgaccgac 187
>gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
5-PRIME, mRNA sequence
Length = 546
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgaccagtac 474
||||||||||||||||||||||||||
Sbjct: 272 ccaaccccatcatcatcgaccagtac 297
>gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
3-PRIME, mRNA sequence
Length = 592
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 449 ccaaccccatcatcatcgaccagtac 474
||||||||||||||||||||||||||
Sbjct: 432 ccaaccccatcatcatcgaccagtac 407
>gb|BF254118.2|BF254118 HVSMEf0003B05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B05f, mRNA sequence
Length = 842
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 445 gtggccaaccccatcatcatcgaccag 471
|||||||||||||||| ||||||||||
Sbjct: 251 gtggccaaccccatcagcatcgaccag 277
>gb|BF258244.3|BF258244 HVSMEf0015D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015D10f, mRNA sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 445 gtggccaaccccatcatcatcgaccag 471
|||||||||||||||| ||||||||||
Sbjct: 381 gtggccaaccccatcagcatcgaccag 407
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatc 213
|||||||||||||||||||| ||||||
Sbjct: 300 ggcaccggcgacgactgcgtgtccatc 326
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 452 accccatcatcatcgaccagt 472
|||||||||||||||||||||
Sbjct: 559 accccatcatcatcgaccagt 579
>gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03A18T 5',
mRNA sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 452 accccatcatcatcgaccagt 472
|||||||||||||||||||||
Sbjct: 199 accccatcatcatcgaccagt 219
>gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C10T 5',
mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 452 accccatcatcatcgaccagt 472
|||||||||||||||||||||
Sbjct: 198 accccatcatcatcgaccagt 218
>gb|AL507273.1|AL507273 AL507273 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J01V 5',
mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 452 accccatcatcatcgaccagt 472
|||||||||||||||||||||
Sbjct: 200 accccatcatcatcgaccagt 220
>gb|BM099596.2|BM099596 EBes01_SQ003_L06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_L06 5', mRNA sequence
Length = 504
Score = 42.1 bits (21), Expect = 0.032
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 cacggacggcgtccatgtcggcggg 153
||||||||||| |||||||||||||
Sbjct: 37 cacggacggcgaccatgtcggcggg 61
>gb|BU979798.1|BU979798 HA17F17r HA Hordeum vulgare subsp. vulgare cDNA clone HA17F17
5-PRIME, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.032
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 cacggacggcgtccatgtcggcggg 153
||||||||||| |||||||||||||
Sbjct: 35 cacggacggcgaccatgtcggcggg 59
>gb|BU989656.1|BU989656 HF22F12r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F12
5-PRIME, mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.032
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 cacggacggcgtccatgtcggcggg 153
||||||||||| |||||||||||||
Sbjct: 15 cacggacggcgaccatgtcggcggg 39
>gb|CK122183.1|CK122183 BES1824101p05 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P051 5-PRIME, mRNA sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.032
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 cacggacggcgtccatgtcggcggg 153
||||||||||| |||||||||||||
Sbjct: 9 cacggacggcgaccatgtcggcggg 33
>gb|BQ665571.1|BQ665571 HX04D11u HX Hordeum vulgare subsp. vulgare cDNA clone HX04D11
3-PRIME, mRNA sequence
Length = 497
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 453 ccccatcatcatcgaccag 471
|||||||||||||||||||
Sbjct: 497 ccccatcatcatcgaccag 479
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,086
Number of Sequences: 312970
Number of extensions: 105086
Number of successful extensions: 30952
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30884
Number of HSP's gapped (non-prelim): 64
length of query: 923
length of database: 175,134,539
effective HSP length: 19
effective length of query: 904
effective length of database: 169,188,109
effective search space: 152946050536
effective search space used: 152946050536
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)