BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3128444.2.1
(857 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. v... 107 6e-022
gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. v... 107 6e-022
gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke devel... 78 5e-013
gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Le... 48 5e-004
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 48 5e-004
gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedl... 48 5e-004
gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachi... 48 5e-004
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 48 5e-004
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 48 5e-004
gb|CV061693.1|CV061693 BNEL70h1 Barley EST endosperm librar... 42 0.030
gb|CV062517.1|CV062517 BNEL7H5 Barley EST endosperm library... 42 0.030
gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Libr... 40 0.12
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 40 0.12
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 40 0.12
gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots... 40 0.12
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 40 0.12
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 40 0.12
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 40 0.12
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 40 0.12
gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA li... 40 0.12
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 40 0.12
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 40 0.12
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 40 0.12
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 40 0.12
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 40 0.12
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 40 0.12
gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA li... 40 0.12
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 40 0.12
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 40 0.12
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 40 0.12
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 40 0.12
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 40 0.12
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 40 0.12
gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA li... 40 0.12
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 40 0.12
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 40 0.12
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 40 0.12
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 40 0.12
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 40 0.12
gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA li... 40 0.12
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 40 0.12
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 40 0.12
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 40 0.12
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 40 0.12
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 40 0.12
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 40 0.12
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 40 0.12
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 40 0.12
gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no... 40 0.12
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 40 0.12
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 40 0.12
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 40 0.12
gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. v... 40 0.12
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 40 0.12
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 40 0.12
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 40 0.12
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 40 0.12
gb|AL508271.1|AL508271 AL508271 Hordeum vulgare Barke devel... 38 0.46
gb|BG300452.1|BG300452 HVSMEb0017B19f Hordeum vulgare seedl... 38 0.46
gb|AV920504.1|AV920504 AV920504 K. Sato unpublished cDNA li... 38 0.46
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 38 0.46
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 38 0.46
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 38 0.46
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 38 0.46
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 38 0.46
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 38 0.46
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 38 0.46
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 38 0.46
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 38 0.46
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 38 0.46
gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. v... 38 0.46
>gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09P08
5-PRIME, mRNA sequence
Length = 654
Score = 107 bits (54), Expect = 6e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 523 gatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggctac 582
||||| ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| | |
Sbjct: 26 gatgttcgtggatactttgcatggtcattcctggataactttgagtgggcgatgggattc 85
Query: 583 accaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcaccccaag 642
||||||||||| || || ||||| || ||||||||| | ||||||||| | ||||| ||
Sbjct: 86 accaagaggtttgggattgtctatgttgattacaagaatgggctctcccgacaccctaaa 145
Query: 643 gcatcggccctctggttctcgcgcctcctcaagggcgaggct 684
||||| ||| | |||||||| ||| |||| || |||||||||
Sbjct: 146 gcatcagccatgtggttctcccgcttcctgaatggcgaggct 187
>gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB07P08
5-PRIME, mRNA sequence
Length = 454
Score = 107 bits (54), Expect = 6e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 523 gatgtccgtgggtacttcgcgtggtcattcctggacaacttcgagtgggctatgggctac 582
||||| ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| | |
Sbjct: 26 gatgttcgtggatactttgcatggtcattcctggataactttgagtgggcgatgggattc 85
Query: 583 accaagaggttcggcatagtctacgtcgattacaaggacgggctctccaggcaccccaag 642
||||||||||| || || ||||| || ||||||||| | ||||||||| | ||||| ||
Sbjct: 86 accaagaggtttgggattgtctatgttgattacaagaatgggctctcccgacaccctaaa 145
Query: 643 gcatcggccctctggttctcgcgcctcctcaagggcgaggct 684
||||| ||| | |||||||| ||| |||| || |||||||||
Sbjct: 146 gcatcagccatgtggttctcccgcttcctgaatggcgaggct 187
>gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L11u 3',
mRNA sequence
Length = 620
Score = 77.8 bits (39), Expect = 5e-013
Identities = 117/142 (82%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 544 tggtcattcct-ggacaacttcgagtgggctatgggctacaccaagaggttcggcatagt 602
||||||||||| ||| ||||| |||| ||| ||||| | |||||||||||| || || ||
Sbjct: 505 tggtcattccttggataactttgagtnggcgatgggattcaccaagaggtttgggattgt 446
Query: 603 ctacgtcgattacaaggacgggctctccaggcaccccaaggcatcggccctctggttctc 662
||| || ||||||||| | ||||||||| | ||||| || ||||| ||| | ||||||||
Sbjct: 445 ctatgttgattacaagaatgggctctcccgacaccctaaagcatcagccatgtggttctc 386
Query: 663 gcgcctcctcaagggcgaggct 684
||| |||| || |||||||||
Sbjct: 385 ccgcttcctgaatggcgaggct 364
>gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 531
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 gattttattggactaaatcattat 189
||||||||||||||||||||||||
Sbjct: 93 gattttattggactaaatcattat 116
>gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007M14f, mRNA sequence
Length = 725
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 gattttattggactaaatcattat 189
||||||||||||||||||||||||
Sbjct: 73 gattttattggactaaatcattat 96
>gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007A10f, mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 gattttattggactaaatcattat 189
||||||||||||||||||||||||
Sbjct: 78 gattttattggactaaatcattat 101
>gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013O15f, mRNA sequence
Length = 648
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 gattttattggactaaatcattat 189
||||||||||||||||||||||||
Sbjct: 210 gattttattggactaaatcattat 233
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| | ||||||||||||||||||
Sbjct: 361 tacttcgcgtggtcgctgctggacaacttcgagtgg 326
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| | ||||||||||||||||||
Sbjct: 266 tacttcgcgtggtcgctgctggacaacttcgagtgg 301
>gb|CV061693.1|CV061693 BNEL70h1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL70h1 5' similar to H.vulgare,
mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.030
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 735 ggcaagtacagaaacattacacaca 759
|||||||| ||||||||||||||||
Sbjct: 159 ggcaagtagagaaacattacacaca 183
>gb|CV062517.1|CV062517 BNEL7H5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL7H5 5' similar to H.vulgare, mRNA
sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.030
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 735 ggcaagtacagaaacattacacaca 759
|||||||| ||||||||||||||||
Sbjct: 135 ggcaagtagagaaacattacacaca 159
>gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D01, mRNA sequence
Length = 1300
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 83 tacttcgcctggtccctcctcgacaacttcgagtgg 118
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 312 tacttcgcgtggtctctcctcgacaactttgagtgg 347
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 622 tacttcgcgtggtctctcctcgacaactttgagtgg 657
>gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06E22u 3', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 343 tacttcgcgtggtctctcctcgacaactttgagtgg 308
>gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01P16u 3',
mRNA sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 308 tacttcgcgtggtctctcctcgacaactttgagtgg 273
>gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009H02f, mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 331 tacttcgcgtggtctctcctcgacaactttgagtgg 296
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 388 tacttcgcgtggtctctcctcgacaactttgagtgg 423
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 246 tacttcgcgtggtctctcctcgacaactttgagtgg 281
>gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 5', mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 117 tacttcgcctggtccctcctcgacaacttcgagtgg 152
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 308 tacttcgcgtggtctctcctcgacaactttgagtgg 273
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 277 tacttcgcgtggtctctcctcgacaactttgagtgg 242
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 303 tacttcgcgtggtctctcctcgacaactttgagtgg 268
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 297 tacttcgcgtggtctctcctcgacaactttgagtgg 262
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 303 tacttcgcgtggtctctcctcgacaactttgagtgg 268
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 289 tacttcgcgtggtctctcctcgacaactttgagtgg 254
>gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 3', mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 303 tacttcgcgtggtctctcctcgacaactttgagtgg 268
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 295 tacttcgcgtggtctctcctcgacaactttgagtgg 260
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 298 tacttcgcgtggtctctcctcgacaactttgagtgg 263
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 276 tacttcgcgtggtctctcctcgacaactttgagtgg 241
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 298 tacttcgcgtggtctctcctcgacaactttgagtgg 263
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 304 tacttcgcgtggtctctcctcgacaactttgagtgg 269
>gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 3', mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 298 tacttcgcgtggtctctcctcgacaactttgagtgg 263
>gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 3', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 481 tacttcgcctggtccctcctcgacaacttcgagtgg 446
>gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O07 5', mRNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 234 tacttcgcgtggtctctcctcgacaactttgagtgg 269
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 237 tacttcgcgtggtctctcctcgacaactttgagtgg 272
>gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085B05F1, mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 154 tacttcgcgtggtctctcctcgacaactttgagtgg 189
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 496 tacttcgcctggtccctcctcgacaacttcgagtgg 531
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 277 tacttcgcgtggtctctcctcgacaactttgagtgg 242
>gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 3', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 554 tacttcgcctggtccctcctcgacaacttcgagtgg 519
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 272 tacttcgcgtggtctctcctcgacaactttgagtgg 237
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 294 tacttcgcgtggtctctcctcgacaactttgagtgg 259
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 277 tacttcgcgtggtctctcctcgacaactttgagtgg 242
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 277 tacttcgcgtggtctctcctcgacaactttgagtgg 242
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 495 tacttcgcgtggtctctcctcgacaactttgagtgg 530
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 318 tacttcgcgtggtctctcctcgacaactttgagtgg 283
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 269 tacttcgcgtggtctctcctcgacaactttgagtgg 304
>gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_E17 5', mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||| ||||| |||| |||||||||||||||
Sbjct: 121 tacttcgcctggtccctcctcgacaacttcgagtgg 156
>gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_B14 5', mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 19 tacttcgcgtggtctctcctcgacaactttgagtgg 54
>gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H06 5', mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgg 570
|||||||||||||| |||| |||||||| ||||||
Sbjct: 112 tacttcgcgtggtctctcctcgacaactttgagtgg 147
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,336
Number of Sequences: 312970
Number of extensions: 68336
Number of successful extensions: 17911
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17755
Number of HSP's gapped (non-prelim): 156
length of query: 857
length of database: 175,134,539
effective HSP length: 19
effective length of query: 838
effective length of database: 169,188,109
effective search space: 141779635342
effective search space used: 141779635342
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)