BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469841.1|BJ469841 BJ469841 K. Sato unpublished cDNA li... 236 9e-061
gb|BJ473254.1|BJ473254 BJ473254 K. Sato unpublished cDNA li... 236 9e-061
gb|CA028449.1|CA028449 HZ62A02r HZ Hordeum vulgare subsp. v... 234 4e-060
gb|AV926843.1|AV926843 AV926843 K. Sato unpublished cDNA li... 226 9e-058
gb|BM372123.2|BM372123 EBro03_SQ004_B12_R root, 3 week, wat... 226 9e-058
gb|CA015467.1|CA015467 HT14G12r HT Hordeum vulgare subsp. v... 226 9e-058
gb|AV923902.1|AV923902 AV923902 K. Sato unpublished cDNA li... 214 3e-054
gb|BE215258.1|BE215258 HV_CEb0006E21f Hordeum vulgare seedl... 109 1e-022
gb|AV931736.1|AV931736 AV931736 K. Sato unpublished cDNA li... 88 5e-016
gb|AV931964.1|AV931964 AV931964 K. Sato unpublished cDNA li... 88 5e-016
gb|AV929045.1|AV929045 AV929045 K. Sato unpublished cDNA li... 84 8e-015
gb|BJ476928.1|BJ476928 BJ476928 K. Sato unpublished cDNA li... 84 8e-015
gb|CA007616.1|CA007616 HU08I04r HU Hordeum vulgare subsp. v... 40 0.11
>gb|BJ469841.1|BJ469841 BJ469841 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n04 5', mRNA sequence
Length = 655
Score = 236 bits (119), Expect = 9e-061
Identities = 338/411 (82%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 452 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 393
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
| |||| ||| ||||||||||| ||||||||||| || | ||| |||||||||||| ||
Sbjct: 392 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcgccacctcc 333
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
||| | ||||||||||| || ||||| ||||||| |||||||||| |||||||
Sbjct: 332 taacgttagcacattctggtggagcctctccgcgttctacccgctcatttagctctcttt 273
Query: 181 ccatcactctaatcctttttgtggcttcaaatccatccatttcaggcatctgtatgtcca 240
|||||| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 272 ccatcattctgattctcttggtggcttcaaacccatccatttctggcatttgtatgtcca 213
Query: 241 tgaaacaagcatcaaaattgtgaggaggtttcagcagtgtgattgcttccttcccactgt 300
||||||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||
Sbjct: 212 tgaaacaagcatcaaaactgtgaggtggttttagcaatgcaattgctttcttcccactgt 153
Query: 301 cagcacaagttacttccgcgccatatttctttagagcgcctgcagcaaccttgagattta 360
| || ||| ||||||| || || || ||||| ||||| || ||||| || || || || |
Sbjct: 152 ctgcgcaaattacttctgccccgtacttcttgagagcaccagcagccactttaaggttca 93
Query: 361 caatattatcatcaaccactatgattcgcttcttgtgaagaaggctgccca 411
|| || || |||||||| |||||| | |||||||||||||||| ||||
Sbjct: 92 cagcgttgtcgtcaaccacaatgattttcctcttgtgaagaaggctaccca 42
>gb|BJ473254.1|BJ473254 BJ473254 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41f18 5', mRNA sequence
Length = 621
Score = 236 bits (119), Expect = 9e-061
Identities = 338/411 (82%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 432 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 373
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
| |||| ||| ||||||||||| ||||||||||| || | ||| |||||||||||| ||
Sbjct: 372 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcgccacctcc 313
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
||| | ||||||||||| || ||||| ||||||| |||||||||| |||||||
Sbjct: 312 taacgttagcacattctggtggagcctctccgcgttctacccgctcatttagctctcttt 253
Query: 181 ccatcactctaatcctttttgtggcttcaaatccatccatttcaggcatctgtatgtcca 240
|||||| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 252 ccatcattctgattctcttggtggcttcaaacccatccatttctggcatttgtatgtcca 193
Query: 241 tgaaacaagcatcaaaattgtgaggaggtttcagcagtgtgattgcttccttcccactgt 300
||||||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||
Sbjct: 192 tgaaacaagcatcaaaactgtgaggtggttttagcaatgcaattgctttcttcccactgt 133
Query: 301 cagcacaagttacttccgcgccatatttctttagagcgcctgcagcaaccttgagattta 360
| || ||| ||||||| || || || ||||| ||||| || ||||| || || || || |
Sbjct: 132 ctgcgcaaattacttctgccccgtacttcttgagagcaccagcagccactttaaggttca 73
Query: 361 caatattatcatcaaccactatgattcgcttcttgtgaagaaggctgccca 411
|| || || |||||||| |||||| | |||||||||||||||| ||||
Sbjct: 72 cagcgttgtcgtcaaccacaatgattttcctcttgtgaagaaggctaccca 22
>gb|CA028449.1|CA028449 HZ62A02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62A02
5-PRIME, mRNA sequence
Length = 629
Score = 234 bits (118), Expect = 4e-060
Identities = 325/394 (82%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| |||||||||||| ||||||| || || |||| ||| ||||||
Sbjct: 616 aatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttgcctgg 557
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||| ||||||||||| || | ||| |||||||||||| || ||| | ||||||
Sbjct: 556 ataacgtctgctgtcattgccagtatcggagttcgccacctcctaacgttagcacattct 497
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||| |||||||||| ||||||||||||| ||| || ||
Sbjct: 496 ggtggagcctctccgcgttctacccgctcatttagctctctttccatcattctgattctc 437
Query: 198 tttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaa 257
|| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 436 ttggtggcttcaaacccatccatttctggcatttgtatgtccatgaaacaagcatcaaaa 377
Query: 258 ttgtgaggaggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttcc 317
||||||| ||||| |||| || ||||||| |||||||||||| || ||| |||||||
Sbjct: 376 ctgtgaggtggttttagcaatgcaattgctttcttcccactgtctgcgcaaattacttct 317
Query: 318 gcgccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaacc 377
|| || || ||||| ||||| || ||||| || || || || ||| || || ||||||
Sbjct: 316 gccccgtacttcttgagagcaccagcagccactttaaggttcacagcgttgtcgtcaacc 257
Query: 378 actatgattcgcttcttgtgaagaaggctgccca 411
|| |||||| | |||||||||||||||| ||||
Sbjct: 256 acaatgattttcctcttgtgaagaaggctaccca 223
Score = 107 bits (54), Expect = 6e-022
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 488 aagcatgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatg 547
|||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 146 aagcatacttgcacgaagcggcttcatgattacattcaagttatgctccctggatatatt 87
Query: 548 tgaattgctcttgacagaacttttagggttctccaaaagaaa 589
|||| ||||||||| |||| | |||||||||||||||||||
Sbjct: 86 tgaactgctcttgatagaattcgtagggttctccaaaagaaa 45
>gb|AV926843.1|AV926843 AV926843 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p17 5', mRNA sequence
Length = 609
Score = 226 bits (114), Expect = 9e-058
Identities = 340/413 (82%), Gaps = 3/413 (0%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 606 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 547
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
| |||| ||| ||||||||||| ||||||||||| || | ||| |||||||||||| ||
Sbjct: 546 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcgccacctcc 487
Query: 121 gaacccctacgc--attctggtggggcttctccacgttctatttgctcatttagatctct 178
|| | || || |||||||||| || ||||| ||||||| |||||||||| |||||
Sbjct: 486 taa-cgttaggcacattctggtggagcctctccgcgttctacccgctcatttagctctct 428
Query: 179 ttccatcactctaatcctttttgtggcttcaaatccatccatttcaggcatctgtatgtc 238
|||||||| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 427 ttccatcattctgattctcttggtggcttcaaacccatccatttctggcatttgtatgtc 368
Query: 239 catgaaacaagcatcaaaattgtgaggaggtttcagcagtgtgattgcttccttcccact 298
||||||||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||
Sbjct: 367 catgaaacaagcatcaaaactgtgaggtggttttagcaatgcaattgctttcttcccact 308
Query: 299 gtcagcacaagttacttccgcgccatatttctttagagcgcctgcagcaaccttgagatt 358
||| || ||| ||||||| || || || ||||| ||||| || ||||| || || || ||
Sbjct: 307 gtctgcgcaaattacttctgccccgtacttcttgagagcaccagcagccactttaaggtt 248
Query: 359 tacaatattatcatcaaccactatgattcgcttcttgtgaagaaggctgccca 411
||| || || |||||||| |||||| | |||||||||||||||| ||||
Sbjct: 247 cacagcgttgtcgtcaaccacaatgattttcctcttgtgaagaaggctaccca 195
Score = 107 bits (54), Expect = 6e-022
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 488 aagcatgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatg 547
|||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 118 aagcatacttgcacgaagcggcttcatgattacattcaagttatgctccctggatatatt 59
Query: 548 tgaattgctcttgacagaacttttagggttctccaaaagaaa 589
|||| ||||||||| |||| | |||||||||||||||||||
Sbjct: 58 tgaactgctcttgatagaattcgtagggttctccaaaagaaa 17
>gb|BM372123.2|BM372123 EBro03_SQ004_B12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_B12 5', mRNA sequence
Length = 436
Score = 226 bits (114), Expect = 9e-058
Identities = 288/346 (83%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 390 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 331
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
| |||| ||| ||||||||||| ||||||||||| || | ||| |||||||||||| ||
Sbjct: 330 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcgccacctcc 271
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
||| | ||||||||||| || ||||| ||||||| |||||||||| |||||||
Sbjct: 270 taacgttagcacattctggtggagcctctccgcgttctacccgctcatttagctctcttt 211
Query: 181 ccatcactctaatcctttttgtggcttcaaatccatccatttcaggcatctgtatgtcca 240
|||||| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 210 ccatcattctgattctcttggtggcttcaaacccatccatttctggcatttgtatgtcca 151
Query: 241 tgaaacaagcatcaaaattgtgaggaggtttcagcagtgtgattgcttccttcccactgt 300
||||||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||
Sbjct: 150 tgaaacaagcatcaaaactgtgaggtggttttagcaatgcaattgctttcttcccactgt 91
Query: 301 cagcacaagttacttccgcgccatatttctttagagcgcctgcagc 346
| || ||| ||||||| || || || ||||| ||||| || |||||
Sbjct: 90 ctgcgcaaattacttctgccccgtacttcttgagagcaccagcagc 45
>gb|CA015467.1|CA015467 HT14G12r HT Hordeum vulgare subsp. vulgare cDNA clone HT14G12
5-PRIME, mRNA sequence
Length = 599
Score = 226 bits (114), Expect = 9e-058
Identities = 288/346 (83%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 498 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 439
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
| |||| ||| ||||||||||| ||||||||||| || | ||| |||||||||||| ||
Sbjct: 438 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcgccacctcc 379
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
||| | ||||||||||| || ||||| ||||||| |||||||||| |||||||
Sbjct: 378 taacgttagcacattctggtggagcctctccgcgttctacccgctcatttagctctcttt 319
Query: 181 ccatcactctaatcctttttgtggcttcaaatccatccatttcaggcatctgtatgtcca 240
|||||| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 318 ccatcattctgattctcttggtggcttcaaacccatccatttctggcatttgtatgtcca 259
Query: 241 tgaaacaagcatcaaaattgtgaggaggtttcagcagtgtgattgcttccttcccactgt 300
||||||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||
Sbjct: 258 tgaaacaagcatcaaaactgtgaggtggttttagcaatgcaattgctttcttcccactgt 199
Query: 301 cagcacaagttacttccgcgccatatttctttagagcgcctgcagc 346
| || ||| ||||||| || || || ||||| ||||| || |||||
Sbjct: 198 ctgcgcaaattacttctgccccgtacttcttgagagcaccagcagc 153
>gb|AV923902.1|AV923902 AV923902 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20a22 5', mRNA sequence
Length = 566
Score = 214 bits (108), Expect = 3e-054
Identities = 308/375 (82%)
Strand = Plus / Minus
Query: 37 catccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgctgtcatgg 96
||||||||||| ||||||| || || |||| ||| ||||||||||| ||||||||||| |
Sbjct: 566 catccatttcacatttcaancagtgctcatatgttgcctggataacgtctgctgtcattg 507
Query: 97 ctaatattggagttcgccactgccgaacccctacgcattctggtggggcttctccacgtt 156
| | ||| |||||||||||| || ||| | ||||||||||| || ||||| ||||
Sbjct: 506 ccagtatcggagttcgccacctcctaacgttagcacattctggtggagcctctccgcgtt 447
Query: 157 ctatttgctcatttagatctctttccatcactctaatcctttttgtggcttcaaatccat 216
||| |||||||||| ||||||||||||| ||| || || || ||||||||||| ||||
Sbjct: 446 ctacccgctcatttagctctctttccatcattctgattctcttggtggcttcaaacccat 387
Query: 217 ccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttcagca 276
||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct: 386 ccatttctggcatttgtatgtccatgaaacaagcatcaaaactgtgaggtggttttagca 327
Query: 277 gtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttctttagag 336
|| ||||||| |||||||||||| || ||| ||||||| || || || ||||| ||||
Sbjct: 326 atgcaattgctttcttcccactgtctgcgcaaattacttctgccccgtacttcttgagag 267
Query: 337 cgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttcttgt 396
| || ||||| || || || || ||| || || |||||||| |||||| | ||||||
Sbjct: 266 caccagcagccactttaaggttcacagcgttgtcgtcaaccacaatgattttcctcttgt 207
Query: 397 gaagaaggctgccca 411
|||||||||| ||||
Sbjct: 206 gaagaaggctaccca 192
Score = 107 bits (54), Expect = 6e-022
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 488 aagcatgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatg 547
|||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 115 aagcatacttgcacgaagcggcttcatgattacattcaagttatgctccctggatatatt 56
Query: 548 tgaattgctcttgacagaacttttagggttctccaaaagaaa 589
|||| ||||||||| |||| | |||||||||||||||||||
Sbjct: 55 tgaactgctcttgatagaattcgtagggttctccaaaagaaa 14
>gb|BE215258.1|BE215258 HV_CEb0006E21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006E21f, mRNA sequence
Length = 677
Score = 109 bits (55), Expect = 1e-022
Identities = 161/195 (82%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 488 aagcatgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatg 547
|||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 420 aagcatacttgcacgaagcggcttcatgattacattcaagttatgctccctggatatatt 361
Query: 548 tgaattgctcttgacagaacttttagggttctccaaaagaaataactttgtagagtctgg 607
|||| ||||||||| |||| | ||||||||||||||||||| | ||| | || |||||
Sbjct: 360 tgaactgctcttgatagaattcgtagggttctccaaaagaaagaccttcggagggtctga 301
Query: 608 ctgatacaatgttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagcc 667
||||| | || ||| |||||| ||| ||| ||||||| || |||||||| || ||||
Sbjct: 300 ctgat-ctttgctccgcaatttgctaagcaattgaggcattgaatgggattccttaagcc 242
Query: 668 aggtttctttgtcaa 682
|||| || |||||||
Sbjct: 241 aggtctccttgtcaa 227
Score = 42.1 bits (21), Expect = 0.028
Identities = 96/121 (79%)
Strand = Plus / Minus
Query: 291 ttcccactgtcagcacaagttacttccgcgccatatttctttagagcgcctgcagcaacc 350
||||||||||| || ||| ||||||| || || || ||||| ||||| || ||||| ||
Sbjct: 617 ttcccactgtctgcgcaaattacttctgccccgtacttcttgagagcaccagcagccact 558
Query: 351 ttgagatttacaatattatcatcaaccactatgattcgcttcttgtgaagaaggctgccc 410
|| || || ||| || || |||||||| |||||| | |||||||||||||||| |||
Sbjct: 557 ttaaggttcacagcgttgtcgtcaaccacaatgattttcctcttgtgaagaaggctaccc 498
Query: 411 a 411
|
Sbjct: 497 a 497
>gb|AV931736.1|AV931736 AV931736 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p17 3', mRNA sequence
Length = 684
Score = 87.7 bits (44), Expect = 5e-016
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 573 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 632
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcg 112
| |||| ||| ||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 633 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcg 684
>gb|AV931964.1|AV931964 AV931964 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26p01 3', mRNA sequence
Length = 673
Score = 87.7 bits (44), Expect = 5e-016
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 562 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 621
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcg 112
| |||| ||| ||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 622 gctcatatgttgcctggataacgtctgctgtcattgccagtatcggagttcg 673
>gb|AV929045.1|AV929045 AV929045 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20m13 3', mRNA sequence
Length = 670
Score = 83.8 bits (42), Expect = 8e-015
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 573 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 632
Query: 61 gttcatgtgtcgcctggataacatctgctgtcat 94
| |||| ||| ||||||||||| |||||||||||
Sbjct: 633 gctcatatgttgcctggataacgtctgctgtcat 666
>gb|BJ476928.1|BJ476928 BJ476928 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n04 3', mRNA sequence
Length = 674
Score = 83.8 bits (42), Expect = 8e-015
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
|||| ||||| || || ||||||||||| ||||| |||||||||||| ||||||| || |
Sbjct: 577 acaactgctccccttcaaatggcttggagacatagccatccatttcacatttcaaacagt 636
Query: 61 gttcatgtgtcgcctggataacatctgctgtcat 94
| |||| ||| ||||||||||| |||||||||||
Sbjct: 637 gctcatatgttgcctggataacgtctgctgtcat 670
>gb|CA007616.1|CA007616 HU08I04r HU Hordeum vulgare subsp. vulgare cDNA clone HU08I04
5-PRIME, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.11
Identities = 90/112 (80%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 571 tagggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaattta 630
||||||||||||||||||| | ||| | || ||||| ||||| | || ||| ||||||
Sbjct: 616 tagggttctccaaaagaaagaccttcggagggtctgactgat-ctttgctccgcaatttg 558
Query: 631 gtaaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaa 682
||| ||| ||||||| || |||||||| || |||||||| || |||||||
Sbjct: 557 ctaagcaattgaggcattgaatgggattccttaagccaggtctccttgtcaa 506
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,542
Number of Sequences: 312970
Number of extensions: 64542
Number of successful extensions: 19537
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19494
Number of HSP's gapped (non-prelim): 37
length of query: 798
length of database: 175,134,539
effective HSP length: 19
effective length of query: 779
effective length of database: 169,188,109
effective search space: 131797536911
effective search space used: 131797536911
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)