BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115139.2.1
(1079 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE456124.3|BE456124 HVSMEg0019N22f Hordeum vulgare pre-a... 383 e-105
gb|BE060930.3|BE060930 HVSMEg0013N24f Hordeum vulgare pre-a... 337 5e-091
gb|BE455566.2|BE455566 HVSMEg0017N13f Hordeum vulgare pre-a... 287 4e-076
gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DA... 50 2e-004
gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots... 46 0.002
gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedl... 46 0.002
gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedl... 46 0.002
gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedl... 46 0.002
gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedl... 46 0.002
gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-a... 46 0.002
gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedl... 46 0.002
gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 ... 46 0.002
gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA li... 46 0.002
gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA li... 46 0.002
gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare su... 46 0.002
gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. v... 46 0.002
gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. v... 46 0.002
gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. v... 46 0.002
gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. v... 46 0.002
gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. v... 46 0.002
gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. v... 46 0.002
gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgar... 46 0.002
gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots... 44 0.009
gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots... 44 0.009
gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DA... 44 0.009
gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike... 44 0.009
gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachi... 44 0.009
gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedl... 42 0.037
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 42 0.037
gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 ... 42 0.037
gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA li... 42 0.037
gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. v... 42 0.037
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 42 0.037
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 42 0.037
gb|BF266947.1|BF266947 HV_CEa0016I06f Hordeum vulgare seedl... 40 0.15
gb|BM816734.1|BM816734 HB02C07_T3.ab1 HB Hordeum vulgare su... 40 0.15
gb|BQ462491.1|BQ462491 HI01A19T HI Hordeum vulgare subsp. v... 40 0.15
gb|BQ467859.1|BQ467859 HR01C13r HR Hordeum vulgare subsp. v... 40 0.15
gb|BQ468550.1|BQ468550 HM01J05T HM Hordeum vulgare subsp. v... 40 0.15
gb|BQ660918.1|BQ660918 HM01B12w HM Hordeum vulgare subsp. v... 40 0.15
gb|BQ661028.1|BQ661028 HM01J05w HM Hordeum vulgare subsp. v... 40 0.15
gb|BQ661690.1|BQ661690 HM04O10u HM Hordeum vulgare subsp. v... 40 0.15
gb|BU997924.1|BU997924 HI09H02r HI Hordeum vulgare subsp. v... 40 0.15
gb|CA020050.1|CA020050 HV14D02r HV Hordeum vulgare subsp. v... 40 0.15
gb|CA020568.1|CA020568 HZ36L03r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CB879989.1|CB879989 HM05C10w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB880089.1|CB880089 HM05H09w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB880146.1|CB880146 HM05K06w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB880355.1|CB880355 HM06E17w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB880776.1|CB880776 HM07M17w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB881229.1|CB881229 HM09C18w HM Hordeum vulgare subsp. v... 40 0.15
gb|CB884083.1|CB884083 HM13N06r HM Hordeum vulgare subsp. v... 40 0.15
>gb|BE456124.3|BE456124 HVSMEg0019N22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019N22f, mRNA sequence
Length = 873
Score = 383 bits (193), Expect = e-105
Identities = 481/577 (83%)
Strand = Plus / Plus
Query: 16 aagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctcgtcaagcgg 75
||||| ||||| ||||||||||| || ||||||||| ||||||| ||||| ||||| |||
Sbjct: 28 aagggcaaggtgtgtgtcactggagcctctggtttcgtcgcctcttggcttgtcaaacgg 87
Query: 76 cttcttgagtctgggtaccatgtcctgggaacagtcagagacccagggaatggcaagaaa 135
||||||||||| ||||| ||||| || || ||||||||||||||||| ||| |||||
Sbjct: 88 cttcttgagtccgggtatcatgttctagggacagtcagagacccaggcaatcagaagaag 147
Query: 136 gtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagctcgtgagagctgat 195
|||| ||||||||| | | | || || ||||| |||||| |||||||||| |||||
Sbjct: 148 gtagcacacctctggaacttagctggtgccaaggagaggctggagctcgtgagggctgac 207
Query: 196 ctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtcttccacacc 255
|||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 208 ctcttggaagaagggagcttcgacgatgccgtgatggcttgcgagggtgtcttccacact 267
Query: 256 gcatcgcccgtcgtcaccggatctaattccaaggaggagatgcttgattcagcaataaac 315
|||||||| || ||||| || |||||||||| || ||||||||||| || ||||||
Sbjct: 268 gcatcgcctatcatcaccaatgctgattccaaggaagaaatgcttgattcggcgataaac 327
Query: 316 ggcacgatgaacgtgctacgctcgtgcaagaagaacccatcgctcaagagggttgtcctg 375
||||| |||||||||| | || ||||||||||| |||| |||||||||||||||||
Sbjct: 328 ggcaccctgaacgtgctgagatcctgcaagaagaatccatttctcaagagggttgtcctc 387
Query: 376 acatcctcgtcgtcgacagtgaggatcaaggacgaagccgacctgccccctaacgtgctg 435
|| || ||||||||||| |||||| | | || ||||| || | ||||| |||||||||
Sbjct: 388 acgtcgtcgtcgtcgaccgtgaggctgagagatgaagctgaattcccccccaacgtgctg 447
Query: 436 ctggacgaatcgtcgtggagctccatcgagttctgcgaaagtctccagatatggtacgcc 495
||||| ||| | || ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 448 ctggatgaaacatcatggagctccgtcgagttctgcgaaagcatccagatatggtacgct 507
Query: 496 gtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggagagcacaggatcgac 555
||||| ||||||||||| ||||| ||||||||||||||||| ||| ||| ||||||
Sbjct: 508 gtcgccaagatcctcgctgagaaatcagcctgggagttcgccaaggagaacaacatcgac 567
Query: 556 ctcgtcaccgttcttccgaccttcgttgtcggaccta 592
||||| |||| |||||||| ||||| ||||| ||||
Sbjct: 568 ctcgtggccgtccttccgacgttcgtcgtcggcccta 604
>gb|BE060930.3|BE060930 HVSMEg0013N24f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013N24f, mRNA sequence
Length = 896
Score = 337 bits (170), Expect = 5e-091
Identities = 434/522 (83%)
Strand = Plus / Plus
Query: 16 aagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctcgtcaagcgg 75
||||| ||||| ||||||||||| || ||||||||| ||||||| ||||| ||||| |||
Sbjct: 27 aagggcaaggtgtgtgtcactggagcctctggtttcgtcgcctcttggcttgtcaaacgg 86
Query: 76 cttcttgagtctgggtaccatgtcctgggaacagtcagagacccagggaatggcaagaaa 135
||||||||||| ||||| ||||| || || ||||||||||||||||| ||| |||||
Sbjct: 87 cttcttgagtccgggtatcatgttctagggacagtcagagacccaggcaatcagaagaag 146
Query: 136 gtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagctcgtgagagctgat 195
|||| ||||||||| | | | || || ||||| |||||| |||||||||| |||||
Sbjct: 147 gtagcacacctctggaacttagctggtgccaaggagaggctggagctcgtgagggctgac 206
Query: 196 ctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtcttccacacc 255
|||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 207 ctcttggaagaagggagcttcgacgatgccgtgatggcttgcgagggtgtcttccacact 266
Query: 256 gcatcgcccgtcgtcaccggatctaattccaaggaggagatgcttgattcagcaataaac 315
|||||||| || ||||| || |||||||||| || ||||||||||| || ||||||
Sbjct: 267 gcatcgcctatcatcaccaatgctgattccaaggaagaaatgcttgattcggcgataaac 326
Query: 316 ggcacgatgaacgtgctacgctcgtgcaagaagaacccatcgctcaagagggttgtcctg 375
||||| |||||||||| | || ||||||||||| |||| |||||||||||||||||
Sbjct: 327 ggcaccctgaacgtgctgagatcctgcaagaagaatccatttctcaagagggttgtcctc 386
Query: 376 acatcctcgtcgtcgacagtgaggatcaaggacgaagccgacctgccccctaacgtgctg 435
|| || ||||||||||| |||||| | | || ||||| || | ||||| |||||||||
Sbjct: 387 acgtcgtcgtcgtcgaccgtgaggctgagagatgaagctgaattcccccccaacgtgctg 446
Query: 436 ctggacgaatcgtcgtggagctccatcgagttctgcgaaagtctccagatatggtacgcc 495
||||| ||| | || ||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 447 ctggatgaaacatcatggagctccgtcgagttctgcgaaagcatccagatattgtacgct 506
Query: 496 gtcgcaaagatcctcgccgagaaggcagcctgggagttcgcc 537
||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 507 tgcgccaagatcctcgctgagaaatcaacctgggagttcgcc 548
>gb|BE455566.2|BE455566 HVSMEg0017N13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017N13f, mRNA sequence
Length = 584
Score = 287 bits (145), Expect = 4e-076
Identities = 388/469 (82%)
Strand = Plus / Plus
Query: 310 ataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccatcgctcaagagggtt 369
||||||||||| |||||||||| | || ||||||||||| |||| ||||||||||||
Sbjct: 2 ataaacggcaccctgaacgtgctgagatcctgcaagaagaatccatttctcaagagggtt 61
Query: 370 gtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccgacctgccccctaac 429
||||| || || ||||||||||| |||||| | | || ||||| || | ||||| |||
Sbjct: 62 gtcctcacgtcgtcgtcgtcgaccgtgaggctgagagatgaagctgaattcccccccaac 121
Query: 430 gtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaagtctccagatatgg 489
||||||||||| ||| | || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 122 gtgctgctggatgaaacatcatggagctccgtcgagttctgcgaaagcatccagatatgg 181
Query: 490 tacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggagagcacagg 549
||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||| |||
Sbjct: 182 tacgctgtcgccaagatcctcgctgagaaatcagcctgggagttcgccaaggagaacaac 241
Query: 550 atcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctcctgagctc 609
||||||||||| |||| |||||||| ||||| ||||| |||| || || || | | |
Sbjct: 242 atcgacctcgtggccgtccttccgacgttcgtcgtcggccctaacctctcccccgtgtta 301
Query: 610 ggccccaccgcttctgatgtcctcggcctgttccaaggagagacggggaagttcacgacg 669
||||||||||| || |||||||| ||| |||| |||| ||||||| ||||||||| |
Sbjct: 302 ggccccaccgcctcagatgtccttggcttgtttaaaggggagacggagaagttcaccatc 361
Query: 670 tacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgtac 729
| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||
Sbjct: 362 ttcgggaggatggggtacgtccacatcgacgacgtcgcgagctgccacatcctggtctac 421
Query: 730 gaggccgcgggcgcccgagggaggtacatctgcagcgcggcggtgctgg 778
|| |||||| |||| |||||||||||||||| | ||||||| ||||
Sbjct: 422 gaaaccgcggacgccaaggggaggtacatctgcaactcggcggttctgg 470
>gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006J10f, mRNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcgcctcctggctcgtcaagcggct 77
|||||||||||||||||||||||||
Sbjct: 91 tcgcctcctggctcgtcaagcggct 115
>gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06F22V 5', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 145 catcgcctcctggctcgtcaagc 167
>gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003C11f, mRNA sequence
Length = 495
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 116 catcgcctcctggctcgtcaagc 138
>gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002I16f, mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 117 catcgcctcctggctcgtcaagc 139
>gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007P02f, mRNA sequence
Length = 837
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 133 catcgcctcctggctcgtcaagc 155
>gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016D02f, mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 103 catcgcctcctggctcgtcaagc 125
>gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003N13f, mRNA sequence
Length = 1042
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 57 catcgcctcctggctcgtcaagc 79
>gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005A08f, mRNA sequence
Length = 819
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 77 catcgcctcctggctcgtcaagc 99
>gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092C06f, mRNA sequence
Length = 941
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 169 catcgcctcctggctcgtcaagc 191
>gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i12 5', mRNA sequence
Length = 585
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 137 catcgcctcctggctcgtcaagc 159
>gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23e18 5', mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 137 catcgcctcctggctcgtcaagc 159
>gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01C06_T3.ab1 similar to Aldehyde reductase,Hydrogen
dehydrogenase,Alcohol dehydrogenase,Cinnamyl-alcohol
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Cinnamoyl-CoA reductase,Transferred entry:
1.18.99.1,Carbonyl reductase (NADPH),Dihydrokaempferol
4-reductase,, mRNA sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 111 catcgcctcctggctcgtcaagc 133
>gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. vulgare cDNA clone HA08A23
5-PRIME, mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 155 catcgcctcctggctcgtcaagc 177
>gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. vulgare cDNA clone HA07C19
5-PRIME, mRNA sequence
Length = 579
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 136 catcgcctcctggctcgtcaagc 158
>gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. vulgare cDNA clone HS04D07
5-PRIME, mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 120 catcgcctcctggctcgtcaagc 142
>gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O06
5-PRIME, mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 88 catcgcctcctggctcgtcaagc 110
>gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. vulgare cDNA clone HB24O01
5-PRIME, mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 38 catcgcctcctggctcgtcaagc 60
>gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. vulgare cDNA clone HA18N13
5-PRIME, mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 105 catcgcctcctggctcgtcaagc 127
>gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K09
5-PRIME, mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 130 catcgcctcctggctcgtcaagc 152
>gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF12C17
5-PRIME, mRNA sequence
Length = 683
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 104 catcgcctcctggctcgtcaagc 126
>gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. vulgare cDNA clone HS08E02
5-PRIME, mRNA sequence
Length = 453
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 120 catcgcctcctggctcgtcaagc 142
>gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS18C15
5-PRIME, mRNA sequence
Length = 417
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 133 catcgcctcctggctcgtcaagc 155
>gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14G15
5-PRIME, mRNA sequence
Length = 568
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 150 catcgcctcctggctcgtcaagc 172
>gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41I09
5-PRIME, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 63 catcgcctcctggctcgtcaagc 85
>gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H08
5-PRIME, mRNA sequence
Length = 412
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 148 catcgcctcctggctcgtcaagc 170
>gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B245 5-PRIME, mRNA sequence
Length = 408
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 catcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||
Sbjct: 147 catcgcctcctggctcgtcaagc 169
>gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01C19V 5', mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||| ||||||||||||||
Sbjct: 103 ttcatcgcctcgtggctcgtcaagcg 128
>gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C05V 5', mRNA sequence
Length = 610
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||| ||||||||||||||
Sbjct: 109 ttcatcgcctcgtggctcgtcaagcg 134
>gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M03f, mRNA sequence
Length = 828
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||| ||||||||||||||
Sbjct: 110 ttcatcgcctcgtggctcgtcaagcg 135
>gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C06f, mRNA sequence
Length = 994
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||| ||||||||||||||
Sbjct: 252 ttcatcgcctcgtggctcgtcaagcg 277
>gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015P02f, mRNA sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||| ||||||||||||||
Sbjct: 252 ttcatcgcctcgtggctcgtcaagcg 277
>gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006M19f, mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 90 ttcatcgcctcgtggctcgtcaagc 114
>gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002I06f, mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 103 ttcatcgcctcgtggctcgtcaagc 127
>gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092C03f, mRNA sequence
Length = 975
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 103 ttcatcgcctcgtggctcgtcaagc 127
>gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a15 5', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 21 ttcatcgcctcgtggctcgtcaagc 45
>gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. vulgare cDNA clone HF08P24
5-PRIME, mRNA sequence
Length = 401
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 89 ttcatcgcctcgtggctcgtcaagc 113
>gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G17
5-PRIME, mRNA sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 178 ttcatcgcctcgtggctcgtcaagc 202
>gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
5-PRIME, mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||||||||| |||||||||||||
Sbjct: 179 ttcatcgcctcgtggctcgtcaagc 203
>gb|BF266947.1|BF266947 HV_CEa0016I06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016I06f, mRNA sequence
Length = 771
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 857 gcgagcagtcgtacggcttc 876
||||||||||||||||||||
Sbjct: 57 gcgagcagtcgtacggcttc 76
>gb|BM816734.1|BM816734 HB02C07_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02C07_T3.ab1 similar to (AC007508) F1K23.2
[Arabidopsis thaliana],(AC008007) F12M16.12 [Arabidopsis
thaliana],(AF361800) At1g53210/F12M16_12 [Arabidopsis
thaliana], mRNA sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 857 gcgagcagtcgtacggcttc 876
||||||||||||||||||||
Sbjct: 222 gcgagcagtcgtacggcttc 241
>gb|BQ462491.1|BQ462491 HI01A19T HI Hordeum vulgare subsp. vulgare cDNA clone HI01A19
5-PRIME, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 857 gcgagcagtcgtacggcttc 876
||||||||||||||||||||
Sbjct: 233 gcgagcagtcgtacggcttc 252
>gb|BQ467859.1|BQ467859 HR01C13r HR Hordeum vulgare subsp. vulgare cDNA clone HR01C13
5-PRIME, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 857 gcgagcagtcgtacggcttc 876
||||||||||||||||||||
Sbjct: 77 gcgagcagtcgtacggcttc 96
>gb|BQ468550.1|BQ468550 HM01J05T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J05
5-PRIME, mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 866 cgtacggcttcgacacgtccaagg 889
|||||||||||| |||||||||||
Sbjct: 152 cgtacggcttcgtcacgtccaagg 175
>gb|BQ660918.1|BQ660918 HM01B12w HM Hordeum vulgare subsp. vulgare cDNA clone HM01B12
3-PRIME, mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 866 cgtacggcttcgacacgtccaagg 889
|||||||||||| |||||||||||
Sbjct: 384 cgtacggcttcgtcacgtccaagg 361
>gb|BQ661028.1|BQ661028 HM01J05w HM Hordeum vulgare subsp. vulgare cDNA clone HM01J05
3-PRIME, mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 866 cgtacggcttcgacacgtccaagg 889
|||||||||||| |||||||||||
Sbjct: 397 cgtacggcttcgtcacgtccaagg 374
>gb|BQ661690.1|BQ661690 HM04O10u HM Hordeum vulgare subsp. vulgare cDNA clone HM04O10
3-PRIME, mRNA sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 866 cgtacggcttcgacacgtccaagg 889
|||||||||||| |||||||||||
Sbjct: 379 cgtacggcttcgtcacgtccaagg 356
>gb|BU997924.1|BU997924 HI09H02r HI Hordeum vulgare subsp. vulgare cDNA clone HI09H02
5-PRIME, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 936 cgacgacgccgtcgcctcgttcat 959
|||||||||||||||||| |||||
Sbjct: 72 cgacgacgccgtcgcctccttcat 95
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,394
Number of Sequences: 312970
Number of extensions: 147394
Number of successful extensions: 44290
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44214
Number of HSP's gapped (non-prelim): 68
length of query: 1079
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1060
effective length of database: 169,188,109
effective search space: 179339395540
effective search space used: 179339395540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)