BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3107376.2.2
(1851 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG299744.1|BG299744 HVSMEa0021K06f Hordeum vulgare seedl... 86 5e-015
gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-a... 80 3e-013
gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. v... 72 7e-011
gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA li... 70 3e-010
gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA li... 70 3e-010
gb|BE214490.1|BE214490 HV_CEb0003J19f Hordeum vulgare seedl... 68 1e-009
gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedl... 68 1e-009
gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedl... 66 4e-009
gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 ... 64 2e-008
gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA li... 62 7e-008
gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA li... 62 7e-008
gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA li... 62 7e-008
gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green... 56 4e-006
gb|BI952581.1|BI952581 HVSMEm0007A18f Hordeum vulgare green... 56 4e-006
gb|BF628635.2|BF628635 HVSMEb0006N15f Hordeum vulgare seedl... 52 7e-005
gb|BG301188.1|BG301188 HVSMEb0019N18f Hordeum vulgare seedl... 52 7e-005
gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedl... 52 7e-005
gb|BU968861.1|BU968861 HB08M23r BC Hordeum vulgare subsp. v... 50 3e-004
gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Libr... 48 0.001
gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DA... 48 0.001
gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedl... 48 0.001
gb|AV913156.1|AV913156 AV913156 K. Sato unpublished cDNA li... 48 0.001
gb|AV915851.1|AV915851 AV915851 K. Sato unpublished cDNA li... 48 0.001
gb|BQ764991.1|BQ764991 EBca01_SQ005_P11_R carpel, pre-anthe... 48 0.001
gb|BU974991.1|BU974991 HB29M04r BC Hordeum vulgare subsp. v... 48 0.001
gb|CA007967.1|CA007967 HU09I09r HU Hordeum vulgare subsp. v... 48 0.001
gb|CA028447.1|CA028447 HZ61P23r HZ Hordeum vulgare subsp. v... 48 0.001
gb|CB883051.1|CB883051 HQ01A17w HQ Hordeum vulgare subsp. v... 48 0.001
gb|BF628612.2|BF628612 HVSMEb0006L23f Hordeum vulgare seedl... 46 0.004
gb|BF065171.2|BF065171 HV_CEb0023M08f Hordeum vulgare seedl... 46 0.004
gb|AV917238.1|AV917238 AV917238 K. Sato unpublished cDNA li... 46 0.004
gb|BQ471556.1|BQ471556 HV02M13r HV Hordeum vulgare subsp. v... 46 0.004
gb|BM445092.2|BM445092 EBem09_SQ007_G13_R embryo, 1 Day ger... 46 0.004
gb|CA017939.1|CA017939 HV06O02r HV Hordeum vulgare subsp. v... 46 0.004
gb|CA019622.1|CA019622 HV12J09r HV Hordeum vulgare subsp. v... 46 0.004
gb|BF627742.1|BF627742 HVSMEb0005K21f Hordeum vulgare seedl... 44 0.016
gb|AV913374.1|AV913374 AV913374 K. Sato unpublished cDNA li... 44 0.016
gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA li... 44 0.016
gb|AV918673.1|AV918673 AV918673 K. Sato unpublished cDNA li... 44 0.016
gb|AV920965.1|AV920965 AV920965 K. Sato unpublished cDNA li... 44 0.016
gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA li... 44 0.016
gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA li... 44 0.016
gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA li... 44 0.016
gb|AV833831.1|AV833831 AV833831 K. Sato unpublished cDNA li... 42 0.065
gb|BF628382.2|BF628382 HVSMEb0003O04f Hordeum vulgare seedl... 42 0.065
gb|BG301073.1|BG301073 HVSMEb0019H09f Hordeum vulgare seedl... 42 0.065
gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA li... 42 0.065
gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA li... 42 0.065
gb|BE420766.1|BE420766 HWM002.C11 ITEC HWM Barley Leaf Libr... 40 0.26
gb|AL504187.1|AL504187 AL504187 Hordeum vulgare Barke roots... 40 0.26
gb|AL505998.1|AL505998 AL505998 Hordeum vulgare Barke devel... 40 0.26
gb|AL506502.1|AL506502 AL506502 Hordeum vulgare Barke devel... 40 0.26
gb|AL507327.1|AL507327 AL507327 Hordeum vulgare Barke devel... 40 0.26
gb|AL507381.1|AL507381 AL507381 Hordeum vulgare Barke devel... 40 0.26
gb|AL508304.1|AL508304 AL508304 Hordeum vulgare Barke devel... 40 0.26
gb|AL508749.1|AL508749 AL508749 Hordeum vulgare Barke devel... 40 0.26
gb|AL509103.1|AL509103 AL509103 Hordeum vulgare Barke devel... 40 0.26
gb|BF622306.2|BF622306 HVSMEa0002K13f Hordeum vulgare seedl... 40 0.26
gb|BF623263.2|BF623263 HVSMEa0016C17f Hordeum vulgare seedl... 40 0.26
gb|BF630809.2|BF630809 HVSMEb0014B23f Hordeum vulgare seedl... 40 0.26
gb|BF261152.2|BF261152 HVSMEf0023O08f Hordeum vulgare seedl... 40 0.26
gb|BI950110.1|BI950110 HVSMEl0018L18f Hordeum vulgare spike... 40 0.26
gb|BI953129.1|BI953129 HVSMEm0011E17f Hordeum vulgare green... 40 0.26
gb|BI953854.1|BI953854 HVSMEm0015A11f Hordeum vulgare green... 40 0.26
gb|BG416929.1|BG416929 HVSMEk0015D24f Hordeum vulgare testa... 40 0.26
gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-a... 40 0.26
gb|BE601944.3|BE601944 HVSMEh0100F18f Hordeum vulgare 5-45 ... 40 0.26
gb|BE602926.3|BE602926 HVSMEh0101B02f Hordeum vulgare 5-45 ... 40 0.26
gb|AV912885.1|AV912885 AV912885 K. Sato unpublished cDNA li... 40 0.26
gb|BM817059.1|BM817059 HC01B12_T3.ab1 HC Hordeum vulgare su... 40 0.26
gb|BJ452427.1|BJ452427 BJ452427 K. Sato unpublished cDNA li... 40 0.26
gb|BQ458624.1|BQ458624 HA04K16r HA Hordeum vulgare subsp. v... 40 0.26
gb|BQ464389.1|BQ464389 HF02C06r HF Hordeum vulgare subsp. v... 40 0.26
gb|BQ464461.1|BQ464461 HF02F16r HF Hordeum vulgare subsp. v... 40 0.26
gb|BQ470569.1|BQ470569 HX03F24r HX Hordeum vulgare subsp. v... 40 0.26
gb|BQ472115.1|BQ472115 HV04H07r HV Hordeum vulgare subsp. v... 40 0.26
gb|BM442303.2|BM442303 EBan01_SQ002_M14_R anther, yellow st... 40 0.26
gb|BM442459.2|BM442459 EBan01_SQ003_D23_R anther, yellow st... 40 0.26
gb|BM442548.2|BM442548 EBan01_SQ003_H21_R anther, yellow st... 40 0.26
gb|BI780962.2|BI780962 EBma05_SQ001_L11_R maternal, 12 DPA,... 40 0.26
gb|BM371485.2|BM371485 EBma08_SQ002_O11_R maternal, 28 DPA,... 40 0.26
gb|BM097183.2|BM097183 EBpi07_SQ002_K18_R pistil, 12 DPA, n... 40 0.26
gb|BI779246.2|BI779246 EBro01_SQ003_H02_R root, 3 week, hyd... 40 0.26
gb|BI779546.2|BI779546 EBro01_SQ004_G04_R root, 3 week, hyd... 40 0.26
gb|BQ753662.1|BQ753662 EBan01_SQ004_O05_R anther, yellow st... 40 0.26
gb|BQ762218.1|BQ762218 EBro01_SQ005_L03_R root, 3 week, hyd... 40 0.26
gb|BU976780.1|BU976780 HA10E20r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU976941.1|BU976941 HA10J06r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU977004.1|BU977004 HA10K22r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU978908.1|BU978908 HA14J19r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU979717.1|BU979717 HA17A17r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU980321.1|BU980321 HA20F06r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU980621.1|BU980621 HA21D03r HA Hordeum vulgare subsp. v... 40 0.26
gb|BU994907.1|BU994907 HM08J05r HM Hordeum vulgare subsp. v... 40 0.26
gb|CA019199.1|CA019199 HV11C22r HV Hordeum vulgare subsp. v... 40 0.26
gb|CA021402.1|CA021402 HZ39P22r HZ Hordeum vulgare subsp. v... 40 0.26
gb|CA023494.1|CA023494 HZ46G20r HZ Hordeum vulgare subsp. v... 40 0.26
gb|CA024700.1|CA024700 HZ50A24r HZ Hordeum vulgare subsp. v... 40 0.26
gb|CA027799.1|CA027799 HZ60B02r HZ Hordeum vulgare subsp. v... 40 0.26
gb|CA031146.1|CA031146 HX09C10r HX Hordeum vulgare subsp. v... 40 0.26
gb|CB883383.1|CB883383 HQ02B08w HQ Hordeum vulgare subsp. v... 40 0.26
gb|CV059119.1|CV059119 BNEL44f10 Barley EST endosperm libra... 40 0.26
gb|CV059220.1|CV059220 BNEL45g10 Barley EST endosperm libra... 40 0.26
gb|CV062196.1|CV062196 BNEL77d2 Barley EST endosperm librar... 40 0.26
gb|CK122227.1|CK122227 BES1824102h10 BES1824 Hordeum vulgar... 40 0.26
gb|L43995.1|BLYBO Hordeum vulgare (clone ABG452) chromosome... 40 0.26
>gb|BG299744.1|BG299744 HVSMEa0021K06f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0021K06f, mRNA sequence
Length = 785
Score = 85.7 bits (43), Expect = 5e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 1530 cgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
|||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 184 cgcggagggagacgtgcgggagggagccgatgaggtgaaggtgcccgatgatggg 130
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1322 cgccagtactcgccgtacggcgcgaaggccacgtc 1356
|||||||||||||| || ||||||||||| |||||
Sbjct: 389 cgccagtactcgccatatggcgcgaaggcgacgtc 355
>gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N10f, mRNA sequence
Length = 633
Score = 79.8 bits (40), Expect = 3e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
||||||||||| ||||||||||||| ||||||||| |||||| ||||| |||||||||||
Sbjct: 213 gaggtcgcggagggagacgtgcgggagggagccgacgaggtgcaggtggccgatgatggg 154
>gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. vulgare cDNA clone HV08M10
5-PRIME, mRNA sequence
Length = 550
Score = 71.9 bits (36), Expect = 7e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
||||||||||| ||||| ||||||| ||||||||| |||||| ||||| ||||||| |||
Sbjct: 276 gaggtcgcggagggagatgtgcgggagggagccgacgaggtgcaggtgtccgatgacggg 217
Query: 1585 gagc 1588
||||
Sbjct: 216 gagc 213
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcct 1439
||||||||||||||||| ||||||||||
Sbjct: 389 acgtggtcgtgcgtgcgcagcacggcct 362
>gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd20a20 5', mRNA sequence
Length = 357
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1526 aggtcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
|||| ||||| ||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 210 aggttgcggagggaaacgtgggggagggaaccgatgaggtggaggtgcccgatgatggg 152
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtg 1471
||||||||||| ||||| ||||||||||| ||||| |||| | |||||| |||| | ||
Sbjct: 321 acgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttg 262
Query: 1472 ggcacggcgcc 1482
|||||||||||
Sbjct: 261 ggcacggcgcc 251
>gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22h15 5', mRNA sequence
Length = 614
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1526 aggtcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
|||| ||||| ||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 242 aggttgcggagggaaacgtgggggagggaaccgatgaggtggaggtgcccgatgatggg 184
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtg 1471
||||||||||| ||||| ||||||||||| ||||| |||| | |||||| |||| | ||
Sbjct: 353 acgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttg 294
Query: 1472 ggcacggcgcc 1482
|||||||||||
Sbjct: 293 ggcacggcgcc 283
>gb|BE214490.1|BE214490 HV_CEb0003J19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003J19f, mRNA sequence
Length = 707
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1529 tcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgat 1578
|||||||||||||| |||||| ||| ||||| ||||||||||||||||||
Sbjct: 217 tcgcggaaggagacatgcgggagggggccgacgaggtggaggtgcccgat 168
Score = 56.0 bits (28), Expect = 4e-006
Identities = 142/180 (78%)
Strand = Plus / Minus
Query: 1282 ggcgctgagcaggtgcgtgttgaccaccttccgcgccgtgcgccagtactcgccgtacgg 1341
||||||||||| ||| ||| |||||||||||| ||| | |||| ||||||||| ||
Sbjct: 461 ggcgctgagcatgtgtgtggtgaccaccttcctggcctgtctccagggctcgccgtaggg 402
Query: 1342 cgcgaaggccacgtccgtgcagttgtagcggatgatgtcggcgacggggttccgcgggcg 1401
||||||||| ||||| || | |||||| |||||||||| |||||| |||| |
Sbjct: 401 cgcgaaggcaacgtcagtccgcttgtagaagatgatgtcgtcgacggcagagcgcgacct 342
Query: 1402 ggacgccagcacgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacac 1461
|| |||||| |||||||||||||||| || |||||| |||| || |||||| ||||||
Sbjct: 341 tgatgccagcgcgtggtcgtgcgtgcgcaggacggccgcggccgcgcgcggcgaggacac 282
>gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012E10f, mRNA sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 1531 gcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
||||| ||| ||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 276 gcggagggatacgtgcgggagggagccgacgaggtgtaggtgcccgatgatggg 223
Score = 56.0 bits (28), Expect = 4e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1403 gacgccagcacgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacacc 1462
|||||||| |||||||| |||||||| ||||| ||||| ||||| | |||| |||||
Sbjct: 401 gacgccaggacgtggtcatgcgtgcgcagcaccgcctcagcggcgcgtggcgatgacacg 342
Query: 1463 acgatggtgggcacggcgcc 1482
|||| ||| |||||||||||
Sbjct: 341 acgagggtcggcacggcgcc 322
Score = 50.1 bits (25), Expect = 3e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 1284 cgctgagcaggtgcgtgttgaccaccttccgcgccgtgcgccagtactcgccgtacggcg 1343
|||| |||| ||||||| |||| | ||||| |||| ||||||||||||||||||||||
Sbjct: 520 cgctcagcatgtgcgtggtgacgagcttcctcgcctgccgccagtactcgccgtacggcg 461
Query: 1344 c 1344
|
Sbjct: 460 c 460
>gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0012I19f, mRNA sequence
Length = 515
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 1493 agcatcagcccgttgtggccgtacttggcgtggaggtcgcggaaggagacgtgcgggtgg 1552
||||| ||||||| | |||||| ||||||| ||||||||||| ||| | ||||||| ||
Sbjct: 293 agcatgagcccgtcgcggccgtgcttggcggcgaggtcgcggagggatatgtgcgggagg 234
Query: 1553 gagccgatgaggtggaggtgcccgatgat 1581
||||||| |||||| ||||| || |||||
Sbjct: 233 gagccgacgaggtgcaggtggcctatgat 205
>gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091B12f, mRNA sequence
Length = 904
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1525 gaggtcgcggaaggagacgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
|||| |||||| ||| ||||||||| |||| |||| |||||| |||||||||||||||||
Sbjct: 191 gaggccgcggagggatacgtgcgggagggaaccgacgaggtgcaggtgcccgatgatggg 132
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 1284 cgctgagcaggtgcgtgttgaccaccttccgcgccgtgcgccagtactcgccgtacggcg 1343
|||| |||| ||||||| |||| | ||||| |||| ||||||||||||||||||||||
Sbjct: 429 cgctcagcatgtgcgtggtgacgagcttcctcgcctgccgccagtactcgccgtacggcg 370
Query: 1344 cgaag 1348
|||||
Sbjct: 369 cgaag 365
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 1403 gacgccagcacgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacacc 1462
||||||| |||||||| |||||||| ||||| ||||| ||||| |||||| |||||
Sbjct: 310 gacgccaagacgtggtcatgcgtgcgcagcaccgcctcagcggcgcgcggcgatgacacg 251
Query: 1463 acgatggtgggcacggcgcc 1482
|||| || |||||||||||
Sbjct: 250 acgagtgtcggcacggcgcc 231
>gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3e02 5', mRNA sequence
Length = 606
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtg 1471
||||||||||| ||||| ||||||||||| ||||| |||| | |||||| |||| | ||
Sbjct: 185 acgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttg 126
Query: 1472 ggcacggcgcc 1482
|||||||||||
Sbjct: 125 ggcacggcgcc 115
>gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11k15 5', mRNA sequence
Length = 598
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtg 1471
||||||||||| ||||| ||||||||||| ||||| |||| | |||||| |||| | ||
Sbjct: 185 acgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttg 126
Query: 1472 ggcacggcgcc 1482
|||||||||||
Sbjct: 125 ggcacggcgcc 115
>gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40l11 5', mRNA sequence
Length = 317
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcctcggcggcctgcggcgtggacaccacgatggtg 1471
||||||||||| ||||| ||||||||||| ||||| |||| | |||||| |||| | ||
Sbjct: 157 acgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttg 98
Query: 1472 ggcacggcgcc 1482
|||||||||||
Sbjct: 97 ggcacggcgcc 87
>gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0004P09f, mRNA sequence
Length = 829
Score = 56.0 bits (28), Expect = 4e-006
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 1281 tggcgctgagcaggtgcgtgttgaccaccttccgcgccgtgcgccagtactcgccgtacg 1340
|||||||||||| ||||||| |||||||||||| ||| | |||| |||||| || |
Sbjct: 127 tggcgctgagcatgtgcgtggtgaccaccttcctggcctgtctccagggctcgccatagg 68
Query: 1341 gcgcgaaggccacgtccgtgcagttgtagcggatgatgtcggcgacgg 1388
||||||| || ||||| || | |||||| |||||||||||||||||
Sbjct: 67 gcgcgaacgcgacgtcagtccgcttgtagaagatgatgtcggcgacgg 20
Score = 52.0 bits (26), Expect = 7e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1023 tcgggaagtagtcctccacgttgaacccgcccag 1056
|||||||||||||||| ||||||||||| |||||
Sbjct: 379 tcgggaagtagtcctcgacgttgaaccctcccag 346
>gb|BI952581.1|BI952581 HVSMEm0007A18f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0007A18f, mRNA sequence
Length = 422
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1541 acgtgcgggtgggagccgatgaggtggaggtgcccgatgatggg 1584
||||| ||| |||| ||||||||||||||||||||||| |||||
Sbjct: 215 acgtgggggagggaaccgatgaggtggaggtgcccgattatggg 172
>gb|BF628635.2|BF628635 HVSMEb0006N15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N15f, mRNA sequence
Length = 710
Score = 52.0 bits (26), Expect = 7e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
||||||||||||||||| |||| || |||||||||||||| || ||||||||
Sbjct: 480 ttgacgatgacgcgcgtcccggacggtatggtgtagccgtttatgacgcagtcg 427
>gb|BG301188.1|BG301188 HVSMEb0019N18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019N18f, mRNA sequence
Length = 925
Score = 52.0 bits (26), Expect = 7e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
||||||||||||||||| |||| || |||||||||||||| || ||||||||
Sbjct: 676 ttgacgatgacgcgcgtcccggacggtatggtgtagccgtttatgacgcagtcg 623
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1018 cagcttcgggaagtagtcctccacgttgaacccgcc 1053
||||| ||||||||||||| |||||||||| |||||
Sbjct: 173 cagctccgggaagtagtcccccacgttgaagccgcc 138
>gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002E08f, mRNA sequence
Length = 850
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 1281 tggcgctgagcaggtgcgtgttgaccaccttccgcgccgtgcgccagtactcgccgta 1338
|||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||||
Sbjct: 199 tggcgctgagcaggtgcgtggtgaccagcctcctcgcctgccgccagaactcgccgta 142
>gb|BU968861.1|BU968861 HB08M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB08M23
5-PRIME, mRNA sequence
Length = 624
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgtt 555
||||||||||||||||| |||| || ||||||||||||||
Sbjct: 423 ttgacgatgacgcgcgtcccggacggtatggtgtagccgtt 383
>gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F10, mRNA sequence
Length = 1299
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1412 acgtggtcgtgcgtgcggagcacggcct 1439
||||||||||||||||| ||||||||||
Sbjct: 162 acgtggtcgtgcgtgcgcagcacggcct 135
>gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011F22f, mRNA sequence
Length = 517
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1321 gcgccagtactcgccgtacggcgcgaag 1348
|||||||||||||||||| |||||||||
Sbjct: 480 gcgccagtactcgccgtagggcgcgaag 453
>gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P04f, mRNA sequence
Length = 900
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1321 gcgccagtactcgccgtacggcgcgaaggccacgtc 1356
|||||||||||||||||| |||||||| || |||||
Sbjct: 494 gcgccagtactcgccgtaaggcgcgaacgctacgtc 459
>gb|AV913156.1|AV913156 AV913156 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21b10 5', mRNA sequence
Length = 548
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1018 cagcttcgggaagtagtcctccacgttgaacccgcc 1053
||||| ||||||||||||| |||||||||| |||||
Sbjct: 184 cagctccgggaagtagtcccccacgttgaagccgcc 149
>gb|AV915851.1|AV915851 AV915851 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16e06 5', mRNA sequence
Length = 698
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1018 cagcttcgggaagtagtcctccacgttgaacccgcc 1053
||||| ||||||||||||| |||||||||| |||||
Sbjct: 336 cagctccgggaagtagtcccccacgttgaagccgcc 301
>gb|BQ764991.1|BQ764991 EBca01_SQ005_P11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_P11 5', mRNA sequence
Length = 641
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1639 cgcggacgagctcctcgccgccgc 1662
||||||||||||||||||||||||
Sbjct: 228 cgcggacgagctcctcgccgccgc 251
>gb|BU974991.1|BU974991 HB29M04r BC Hordeum vulgare subsp. vulgare cDNA clone HB29M04
5-PRIME, mRNA sequence
Length = 514
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1639 cgcggacgagctcctcgccgccgc 1662
||||||||||||||||||||||||
Sbjct: 24 cgcggacgagctcctcgccgccgc 47
>gb|CA007967.1|CA007967 HU09I09r HU Hordeum vulgare subsp. vulgare cDNA clone HU09I09
5-PRIME, mRNA sequence
Length = 700
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1639 cgcggacgagctcctcgccgccgc 1662
||||||||||||||||||||||||
Sbjct: 12 cgcggacgagctcctcgccgccgc 35
>gb|CA028447.1|CA028447 HZ61P23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61P23
5-PRIME, mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 490 cgggtccctggcgagcgcccacgcgttgacga 521
|||||||||| ||| |||||||||||||||||
Sbjct: 570 cgggtccctgccgatcgcccacgcgttgacga 539
>gb|CB883051.1|CB883051 HQ01A17w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01A17
3-PRIME, mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1639 cgcggacgagctcctcgccgccgc 1662
||||||||||||||||||||||||
Sbjct: 227 cgcggacgagctcctcgccgccgc 250
>gb|BF628612.2|BF628612 HVSMEb0006L23f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0006L23f, mRNA sequence
Length = 708
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1558 gatgaggtggaggtgcccgatgatggggagc 1588
||||||||||||||| ||||||| |||||||
Sbjct: 192 gatgaggtggaggtggccgatgaaggggagc 162
>gb|BF065171.2|BF065171 HV_CEb0023M08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M08f, mRNA sequence
Length = 560
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1558 gatgaggtggaggtgcccgatgatggggagc 1588
||||||||||||||| ||||||| |||||||
Sbjct: 184 gatgaggtggaggtggccgatgaaggggagc 154
>gb|AV917238.1|AV917238 AV917238 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b09 5', mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1024 cgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagctc 1083
|||||||| |||||||| |||||| ||||| | ||| | |||| ||| |||| ||||||
Sbjct: 99 cgggaagtggtcctccaggttgaagccgccgatgagcgaggcgttggcctccaccagctc 40
Query: 1084 ccggaacagcttgtt 1098
|||||| |||||||
Sbjct: 39 ccggaagtgcttgtt 25
>gb|BQ471556.1|BQ471556 HV02M13r HV Hordeum vulgare subsp. vulgare cDNA clone HV02M13
5-PRIME, mRNA sequence
Length = 652
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1024 cgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagctc 1083
|||||||| |||||||| |||||| ||||| | ||| | |||| ||| |||| ||||||
Sbjct: 427 cgggaagtggtcctccaggttgaagccgccgatgagcgaggcgttggcctccaccagctc 368
Query: 1084 ccggaacagcttgtt 1098
|||||| |||||||
Sbjct: 367 ccggaagtgcttgtt 353
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1402 ggacgccagcacgtggtcgtgcgtgcggagcacggcct 1439
|||||| | |||||||||||||||||| ||||| ||||
Sbjct: 55 ggacgcgaacacgtggtcgtgcgtgcgcagcactgcct 18
>gb|BM445092.2|BM445092 EBem09_SQ007_G13_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_G13 5', mRNA sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1558 gatgaggtggaggtgcccgatgatggggagc 1588
||||||||||||||| ||||||| |||||||
Sbjct: 184 gatgaggtggaggtggccgatgaaggggagc 154
>gb|CA017939.1|CA017939 HV06O02r HV Hordeum vulgare subsp. vulgare cDNA clone HV06O02
5-PRIME, mRNA sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1024 cgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagctc 1083
|||||||| |||||||| |||||| ||||| | ||| | |||| ||| |||| ||||||
Sbjct: 466 cgggaagtggtcctccaggttgaagccgccgatgagcgaggcgttggcctccaccagctc 407
Query: 1084 ccggaacagcttgtt 1098
|||||| |||||||
Sbjct: 406 ccggaagtgcttgtt 392
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1402 ggacgccagcacgtggtcgtgcgtgcggagcacggcct 1439
|||||| | |||||||||||||||||| ||||| ||||
Sbjct: 94 ggacgcgaacacgtggtcgtgcgtgcgcagcactgcct 57
>gb|CA019622.1|CA019622 HV12J09r HV Hordeum vulgare subsp. vulgare cDNA clone HV12J09
5-PRIME, mRNA sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1024 cgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagctc 1083
|||||||| |||||||| |||||| ||||| | ||| | |||| ||| |||| ||||||
Sbjct: 114 cgggaagtggtcctccaggttgaagccgccgatgagcgaggcgttggcctccaccagctc 55
Query: 1084 ccggaacagcttgtt 1098
|||||| |||||||
Sbjct: 54 ccggaagtgcttgtt 40
>gb|BF627742.1|BF627742 HVSMEb0005K21f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0005K21f, mRNA sequence
Length = 818
Score = 44.1 bits (22), Expect = 0.016
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 1024 cgggaagtagtcctccacgttgaacccgcccaggagggcggcgctggtctccgtcagctc 1083
|||||||| |||||||| |||||| ||||| | ||| | |||| ||| |||| ||||||
Sbjct: 704 cgggaagtggtcctccaggttgaagccgccgatgagcgaggcgttggcctccaccagctc 645
Query: 1084 ccggaa 1089
||||||
Sbjct: 644 ccggaa 639
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1402 ggacgccagcacgtggtcgtgcgtgcggagcacggcct 1439
|||||| | |||||||||||||||||| ||||| ||||
Sbjct: 332 ggacgcgaacacgtggtcgtgcgtgcgcagcactgcct 295
>gb|AV913374.1|AV913374 AV913374 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21n09 5', mRNA sequence
Length = 522
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 119 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 66
>gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21b10 3', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 476 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 529
>gb|AV918673.1|AV918673 AV918673 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21n09 3', mRNA sequence
Length = 583
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528
>gb|AV920965.1|AV920965 AV920965 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16e06 3', mRNA sequence
Length = 594
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 475 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 528
>gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1h15 3', mRNA sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 457 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 510
>gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26d07 5', mRNA sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 534 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 481
>gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36o23 5', mRNA sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgttgatctcgcagtcg 568
|||||||||||||| || |||| || |||||||||||||| || ||||||||
Sbjct: 169 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtttatgacgcagtcg 116
>gb|AV833831.1|AV833831 AV833831 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags20j07, mRNA sequence
Length = 374
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1411 cacgtggtcgtgcgtgcggagcacggcct 1439
|||||||||||||||||| ||||| ||||
Sbjct: 345 cacgtggtcgtgcgtgcgcagcactgcct 317
>gb|BF628382.2|BF628382 HVSMEb0003O04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003O04f, mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 530 gtgccggcggggatggtgtagccgttgat 558
||||||||||||||| ||||||||||||
Sbjct: 461 gtgccggcggggatgtcgtagccgttgat 433
>gb|BG301073.1|BG301073 HVSMEb0019H09f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0019H09f, mRNA sequence
Length = 578
Score = 42.1 bits (21), Expect = 0.065
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1411 cacgtggtcgtgcgtgcggagcacggcct 1439
|||||||||||||||||| ||||| ||||
Sbjct: 212 cacgtggtcgtgcgtgcgcagcactgcct 184
>gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 5', mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgtt 555
|||||||||||||| || |||| || ||||||||||||||
Sbjct: 400 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtt 360
>gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 3', mRNA sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.065
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 515 ttgacgatgacgcgcgtgccggcggggatggtgtagccgtt 555
|||||||||||||| || |||| || ||||||||||||||
Sbjct: 457 ttgacgatgacgcgtgtcccggacggtatggtgtagccgtt 497
>gb|BE420766.1|BE420766 HWM002.C11 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM002.C11, mRNA sequence
Length = 985
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 268 ggtgcgctccatctcggcgg 287
||||||||||||||||||||
Sbjct: 285 ggtgcgctccatctcggcgg 266
>gb|AL504187.1|AL504187 AL504187 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04H16V 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 268 ggtgcgctccatctcggcgg 287
||||||||||||||||||||
Sbjct: 350 ggtgcgctccatctcggcgg 331
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 379,254
Number of Sequences: 312970
Number of extensions: 379254
Number of successful extensions: 124961
Number of sequences better than 0.5: 106
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124662
Number of HSP's gapped (non-prelim): 298
length of query: 1851
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1832
effective length of database: 169,188,109
effective search space: 309952615688
effective search space used: 309952615688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)