BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA li... 502 e-140
gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA li... 488 e-136
gb|CA006313.1|CA006313 HU14I15u HU Hordeum vulgare subsp. v... 341 3e-092
gb|BU996676.1|BU996676 HM14G05r HM Hordeum vulgare subsp. v... 260 8e-068
gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA li... 163 1e-038
gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA li... 163 1e-038
gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. v... 163 1e-038
gb|BQ759817.1|BQ759817 EBpi05_SQ004_A17_R pistil, 8 DPA, no... 105 3e-021
gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no... 98 7e-019
gb|BQ759821.1|BQ759821 EBpi05_SQ004_B15 _R pistil, 8 DPA, n... 98 7e-019
gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no... 98 7e-019
gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. v... 88 7e-016
gb|BG367217.1|BG367217 HVSMEi0011F11f Hordeum vulgare 20 DA... 82 4e-014
gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedl... 74 1e-011
gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA li... 74 1e-011
gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA li... 74 1e-011
gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA li... 74 1e-011
gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA li... 74 1e-011
gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. v... 74 1e-011
gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, ... 74 1e-011
gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. v... 74 1e-011
gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DA... 70 2e-010
gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. v... 70 2e-010
gb|BE437681.1|BE437681 SFR006.D04F990622 ITEC SFR Barley Le... 66 2e-009
gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachi... 66 2e-009
gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedl... 62 4e-008
gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedl... 62 4e-008
gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. v... 52 4e-005
>gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n03 3', mRNA sequence
Length = 699
Score = 502 bits (253), Expect = e-140
Identities = 400/449 (89%)
Strand = Plus / Plus
Query: 259 gcaggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcg 318
||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 247 gcaggctatatctaatttgccccatagccccgcggatgcgacttttgccacctccatgcg 306
Query: 319 actgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatc 378
|| || ||||| || ||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 307 acagacaggctttccttgagatcggtatgttgagcagtccagttgagttcgttgttgatc 366
Query: 379 tttgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatt 438
|| || ||||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct: 367 ttggtagggtcactgaatacttcagcatagtctcctggcctcctgctgaggtactcaatt 426
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||
Sbjct: 427 ttgatgtcaaccccggttgcctgcttgcaggcatcgacaaactccttaacggagcgacct 486
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 487 cttccagtgccaacattgtaaatgccaactttactaggctttgccttgttgagtgctttc 546
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagct 618
||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 547 acatgagcatctactagatctgtgacatcaatgtagtctcttatgcaggttccatcagct 606
Query: 619 gtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgcatcaaag 678
|| ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 607 gtaggataatctattcctttaaccttcaatcctgaaatgactcctagtgctgcatcaaag 666
Query: 679 caagccccagatatccgaccatgctctcg 707
|| || |||||||| | |||||||||||
Sbjct: 667 catgctccagatattcttccatgctctcg 695
>gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 3', mRNA sequence
Length = 678
Score = 488 bits (246), Expect = e-136
Identities = 378/422 (89%)
Strand = Plus / Plus
Query: 259 gcaggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcg 318
||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 250 gcaggctatatctaatttgccccatagccccgcggatgcgacttttgccacctccatgcg 309
Query: 319 actgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatc 378
|| || ||||| || ||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 310 acagacaggctttccttgagatcggtatgttgagcagtccagttgagttcgttgttgatc 369
Query: 379 tttgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatt 438
|| || ||||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct: 370 ttggtagggtcactgaatacttcagcatagtctcctggcctcctgctgaggtactcaatt 429
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||
Sbjct: 430 ttgatgtcaaccccggttgcctgcttgcaggcatcgacaaactccttaacggagcgacct 489
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 490 cttccagtgccaacattgtaaatgccaactttactaggctttgccttgttgagtgctttc 549
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagct 618
||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 550 acatgagcatctactagatctgtgacatcaatgtagtctcttatgcaggttccatcagct 609
Query: 619 gtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgcatcaaag 678
|| ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 610 gtaggataatctattcctttaaccttcaatcctgaaatgactcctagtgctgcatcaaag 669
Query: 679 ca 680
||
Sbjct: 670 ca 671
>gb|CA006313.1|CA006313 HU14I15u HU Hordeum vulgare subsp. vulgare cDNA clone HU14I15
3-PRIME, mRNA sequence
Length = 550
Score = 341 bits (172), Expect = 3e-092
Identities = 280/316 (88%)
Strand = Plus / Plus
Query: 259 gcaggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcg 318
||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 231 gcaggctatatctaatttgccccatagccccgcggatgcgacttttgccacctccatgcg 290
Query: 319 actgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatc 378
|| || ||||| || ||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 291 acagacaggctttccttgagatcggtatgttgagcagtccagttgagttcgttgttgatc 350
Query: 379 tttgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatt 438
|| || ||||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct: 351 ttggtagggtcactgaatacttcagcatagtctcctggcctcctgctgaggtactcaatt 410
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||
Sbjct: 411 ttgatgtcaaccccggttgcctgcttgcaggcatcgacaaactccttaacggagcgacct 470
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 471 cttccagtgccaacattgtaaatgccaactttactaggctttgccttgttgagtgctttc 530
Query: 559 acatgagcatcaacta 574
||||||||||| ||||
Sbjct: 531 acatgagcatctacta 546
>gb|BU996676.1|BU996676 HM14G05r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G05
5-PRIME, mRNA sequence
Length = 536
Score = 260 bits (131), Expect = 8e-068
Identities = 227/259 (87%)
Strand = Plus / Minus
Query: 259 gcaggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcg 318
||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 269 gcaggctatatctaatttgccccatagccccgcggatgcgacttttgccacctccatgcg 210
Query: 319 actgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatc 378
|| || ||||| || ||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 209 acagacaggctttccttgagatcggtatgttgagcagtccagttgagttcgttgttgatc 150
Query: 379 tttgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatt 438
|| || ||||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct: 149 ttggtagggtcactgaatacttcagcatagtctcctggcctcctgctgaggtactcaatt 90
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||
Sbjct: 89 ttgatgtcaaccccggttgcctgcttgcaggcatcgacaaactccttaacggagcgacct 30
Query: 499 cttcctgttccaacattgt 517
||||| || ||||||||||
Sbjct: 29 cttccagtgccaacattgt 11
>gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak24n03 5', mRNA sequence
Length = 629
Score = 163 bits (82), Expect = 1e-038
Identities = 154/178 (86%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgata 894
||||||||||||| |||||| |||||||||||||| || ||||||||||| || || ||
Sbjct: 560 tttgagaaatctagtatgatgtcctctgccatttttttggcttttccataggggttaatt 501
Query: 895 gggaactaaggtgtggcttctgtaataggcatcttatctggttctccgtaggtagcacat 954
|| |||| |||||||| ||| | ||||||||||| |||||||| || || || |||||
Sbjct: 500 ggcaactgaggtgtggtctctattataggcatcttctctggttccccataagttgcacag 441
Query: 955 gtactggagtaaataagggtttggactccatgagatgccatagcctccaaaatcagta 1012
||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct: 440 gtactggagtaaataagtgtcttgactccatgagaagccatagcctccaaaatcagta 383
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 629 aatcttccctctgggtctgatccaatgacattgaaatatct 589
>gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 5', mRNA sequence
Length = 533
Score = 163 bits (82), Expect = 1e-038
Identities = 154/178 (86%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgata 894
||||||||||||| |||||| |||||||||||||| || ||||||||||| || || ||
Sbjct: 482 tttgagaaatctagtatgatgtcctctgccatttttttggcttttccataggggttaatt 423
Query: 895 gggaactaaggtgtggcttctgtaataggcatcttatctggttctccgtaggtagcacat 954
|| |||| |||||||| ||| | ||||||||||| |||||||| || || || |||||
Sbjct: 422 ggcaactgaggtgtggtctctattataggcatcttctctggttccccataagttgcacag 363
Query: 955 gtactggagtaaataagggtttggactccatgagatgccatagcctccaaaatcagta 1012
||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct: 362 gtactggagtaaataagtgtcttgactccatgagaagccatagcctccaaaatcagta 305
>gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. vulgare cDNA clone HB27I16
5-PRIME, mRNA sequence
Length = 450
Score = 163 bits (82), Expect = 1e-038
Identities = 154/178 (86%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgata 894
||||||||||||| |||||| |||||||||||||| || ||||||||||| || || ||
Sbjct: 387 tttgagaaatctagtatgatgtcctctgccatttttttggcttttccataggggttaatt 328
Query: 895 gggaactaaggtgtggcttctgtaataggcatcttatctggttctccgtaggtagcacat 954
|| |||| |||||||| ||| | ||||||||||| |||||||| || || || |||||
Sbjct: 327 ggcaactgaggtgtggtctctattataggcatcttctctggttccccataagttgcacag 268
Query: 955 gtactggagtaaataagggtttggactccatgagatgccatagcctccaaaatcagta 1012
||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct: 267 gtactggagtaaataagtgtcttgactccatgagaagccatagcctccaaaatcagta 210
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 739 ccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| |||||||| ||||||||||||||
Sbjct: 450 ccctctgggtctgatccaatgacattgaaatatct 416
>gb|BQ759817.1|BQ759817 EBpi05_SQ004_A17_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A17 5', mRNA sequence
Length = 430
Score = 105 bits (53), Expect = 3e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| | ||| |||||||| || || || |||| ||| ||||||
Sbjct: 353 gctttgacatgagcatcaacaagatcagtgacatctatgtagtcccttacgcatgttcca 294
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||||| || || || || |||||| |||||||| |||||||||| |||| |||||||
Sbjct: 293 tcagcagtagggtagtccgttcctcgaacctttagccctggaatgattcctgatgctgcg 234
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||| || || ||||| |||| |||||||| || ||||| ||||| ||||| || ||
Sbjct: 233 tcaaaacacgcaccagaaatccttccatgctcacgcagttcaggccttggagcttcccca 174
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| | |||||||||||| || ||||| |||||||| |||||
Sbjct: 173 aggcgtccctcagggtccgacccaatcacattgaagtatct 133
>gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A16 5', mRNA sequence
Length = 587
Score = 97.6 bits (49), Expect = 7e-019
Identities = 178/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| | ||| |||||||| || || || |||| ||| ||||||
Sbjct: 353 gctttgacatgagcatcaacaagatcagtgacatctatgtagtcccttacgcatgttcca 294
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||||| || || || || |||||| |||||||| |||||||||| |||| |||||||
Sbjct: 293 tcagcagtagggtagtccgttcctcgaacctttagccctggaatgattcctgatgctgcg 234
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||| || || ||||| ||| |||||||| || ||||| ||||| ||||| || ||
Sbjct: 233 tcaaaacacgcaccagaaatctttccatgctcacgcagttcaggccttggagcttcccca 174
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| | |||||||||||| || ||||| |||||||| |||||
Sbjct: 173 aggcgtccctcagggtccgacccaatcacattgaagtatct 133
>gb|BQ759821.1|BQ759821 EBpi05_SQ004_B15 _R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B15 5', mRNA sequence
Length = 315
Score = 97.6 bits (49), Expect = 7e-019
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| | ||| |||||||| || || || |||| ||| ||||||
Sbjct: 273 gctttgacatgagcatcaacaagatcagtgacatctatgtagtcccttacgcatgttcca 214
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||||| || || || || |||||| |||||||| |||||||||| |||| |||||||
Sbjct: 213 tcagcagtagggtagtccgttcctcgaacctttagccctggaatgattcctgatgctgcg 154
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagc 725
|||||||| || ||||| |||| |||||||| || ||||| ||||| |||||
Sbjct: 153 tcaaagcacgcaccagaaatccttccatgctcacgcagttcaggccttggagc 101
>gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B16 5', mRNA sequence
Length = 646
Score = 97.6 bits (49), Expect = 7e-019
Identities = 178/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| | ||| |||||||| || || || |||| ||| ||||||
Sbjct: 353 gctttgacatgagcatcaacaagatcagtgacatctatgtagtcccttacgcatgttcca 294
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||||| || || || || |||||| |||||||| |||||||||| |||| |||||||
Sbjct: 293 tcagcagtagggtagtccgttcctcgaacctttagccctggaatgattcctgatgctgcg 234
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||| || || ||||| ||| |||||||| || ||||| ||||| ||||| || ||
Sbjct: 233 tcaaaacacgcaccagaaatctttccatgctcacgcagttcaggccttggagcttcccca 174
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| | |||||||||||| || ||||| |||||||| |||||
Sbjct: 173 aggcgtccctcagggtccgacccaatcacattgaagtatct 133
>gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB26C19
5-PRIME, mRNA sequence
Length = 554
Score = 87.7 bits (44), Expect = 7e-016
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 949 gcacatgtactggagtaaataagggtttggactccatgagatgccatagcctccaaaatc 1008
||||| ||||||||||||||||| || | |||||||||||| ||||||||||||||||||
Sbjct: 543 gcacaggtactggagtaaataagtgtcttgactccatgagaagccatagcctccaaaatc 484
Query: 1009 agta 1012
||||
Sbjct: 483 agta 480
>gb|BG367217.1|BG367217 HVSMEi0011F11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011F11f, mRNA sequence
Length = 873
Score = 81.8 bits (41), Expect = 4e-014
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||||||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 189 ttgatgttgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 130
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 129 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 70
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 69 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 29
>gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008E12f, mRNA sequence
Length = 497
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 189 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 130
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 129 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 70
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 69 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 29
>gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2a02 3', mRNA sequence
Length = 691
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 282 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 341
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 342 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 401
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 402 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 442
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttctt 872
|||||||||||||||||||||||
Sbjct: 668 atgatatcctctgccattttctt 690
>gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2b02 3', mRNA sequence
Length = 532
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 212 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 271
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 272 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 331
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 332 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 372
>gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i15 3', mRNA sequence
Length = 678
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 281 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 340
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 341 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 400
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 401 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 441
>gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 3', mRNA sequence
Length = 658
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 284 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 343
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 344 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 403
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 404 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 444
>gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. vulgare cDNA clone HX04E07
3-PRIME, mRNA sequence
Length = 516
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 292 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 351
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 352 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 411
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 412 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 452
>gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_O16 5', mRNA sequence
Length = 526
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 216 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 157
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 156 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 97
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 96 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 56
>gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42A04
5-PRIME, mRNA sequence
Length = 533
Score = 73.8 bits (37), Expect = 1e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 242 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 183
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 182 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 123
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 122 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 82
>gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019L05f, mRNA sequence
Length = 618
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || ||||| | ||||
Sbjct: 414 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactccttcactgacctacct 355
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 354 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 295
Query: 559 acatgagcatc 569
|| || |||||
Sbjct: 294 acgtgggcatc 284
>gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. vulgare cDNA clone HB30H20
5-PRIME, mRNA sequence
Length = 479
Score = 69.9 bits (35), Expect = 2e-010
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
||||||||||||||||||||||| || || ||||| || || || || |||| || ||
Sbjct: 320 atgatatcctctgccattttcttggccttgccatacgggtttatgggaaactggggagtt 261
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaata 969
|||| || ||||||||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct: 260 tcttcagtgataggcatcttctcgggttccccgtaggtggcacatgtgctagagtagatc 201
Query: 970 agggttt 976
|||||||
Sbjct: 200 agggttt 194
>gb|BE437681.1|BE437681 SFR006.D04F990622 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 323
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 259 gcaggctatatttagtttggcccgtagccacgcggatgcgacttttgccacct 311
||||||||||| || |||| ||| ||||| |||||||||||||||||||||||
Sbjct: 53 gcaggctatatctaatttgccccatagccccgcggatgcgacttttgccacct 1
>gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005D24f, mRNA sequence
Length = 1150
Score = 65.9 bits (33), Expect = 2e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 439 ttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
||||||| ||| || || ||||||||||| || || |||||||| || | ||| | ||||
Sbjct: 329 ttgatgtcgactccggtcgccttcttgcaagcttccacaaactctttcattgacctacct 270
Query: 499 cttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttc 558
||||| || ||||||||||| ||||| ||||| | ||| ||||||||||| ||||||
Sbjct: 269 cttccggtgccaacattgtatatgccaactttgcctctctccgccttgttgagcgctttc 210
Query: 559 acatgagcatcaactaaatctgtgacatcaatataatctct 599
|| || ||||| || | || |||||||| || ||||||||
Sbjct: 209 acgtgggcatctaccaggtcggtgacatcgatgtaatctct 169
>gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004A09f, mRNA sequence
Length = 751
Score = 61.9 bits (31), Expect = 4e-008
Identities = 103/127 (81%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||| |||||||||||||||||| || || ||||| || || || || |||| || ||
Sbjct: 327 atgacatcctctgccattttcttggccttgccatacgggtttatgggaaactggggagtt 268
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaata 969
|||| || ||||||||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct: 267 tcttcagtcataggcatcttctcgggttccccgtaggtggcacatgtgctagagtagatc 208
Query: 970 agggttt 976
|||||||
Sbjct: 207 agggttt 201
Score = 54.0 bits (27), Expect = 9e-006
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 461 tcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaacattgtaaa 520
||||||| || || |||||||| || ||||| | || |||||| || ||||||||||| |
Sbjct: 689 tcttgcaagcttccacaaactccttcactgacctacttcttccggtgccaacattgtata 630
Query: 521 tgccgacttttctaggctctgccttgttgagtgctttcacatgagcatcaactaaatctg 580
|||| ||||| | ||| ||||||||||| |||||||| || ||||| || | || |
Sbjct: 629 tgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccaggtcgg 570
Query: 581 tgacatcaatataatctct 599
||||||| || ||||||||
Sbjct: 569 tgacatcgatgtaatctct 551
>gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007H02f, mRNA sequence
Length = 841
Score = 61.9 bits (31), Expect = 4e-008
Identities = 103/127 (81%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
||||||||||||||||||||||| || || ||||| || || || || |||| | ||
Sbjct: 611 atgatatcctctgccattttcttggccttgccatacgggtttatgggaaactgggaagtt 552
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaata 969
|||| || ||||||||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct: 551 tcttcagtgataggcatcttctcgggttccccgtaggtggcacatgtgctagagtagatc 492
Query: 970 agggttt 976
|||||||
Sbjct: 491 agggttt 485
>gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. vulgare cDNA clone HB01N17
5-PRIME, mRNA sequence
Length = 521
Score = 52.0 bits (26), Expect = 4e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 919 ataggcatcttatctggttctccgtaggtagcacatgtactggagtaaataagggttt 976
||||||||||| || ||||| |||||||| |||||||| || ||||| || |||||||
Sbjct: 481 ataggcatcttctcgggttccccgtaggtggcacatgtgctagagtagatcagggttt 424
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,776
Number of Sequences: 312970
Number of extensions: 71776
Number of successful extensions: 18155
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18084
Number of HSP's gapped (non-prelim): 54
length of query: 1016
length of database: 175,134,539
effective HSP length: 19
effective length of query: 997
effective length of database: 169,188,109
effective search space: 168680544673
effective search space used: 168680544673
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)