BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG416908.2|BG416908 HVSMEk0015C11f Hordeum vulgare testa... 303 6e-081
gb|BQ767300.1|BQ767300 EBro08_SQ008_C18_R root, 3 week, dro... 188 2e-046
gb|CA015292.1|CA015292 HT13N20r HT Hordeum vulgare subsp. v... 180 6e-044
gb|BJ468331.1|BJ468331 BJ468331 K. Sato unpublished cDNA li... 141 5e-032
gb|BI950175.1|BI950175 HVSMEl0019E11f Hordeum vulgare spike... 139 2e-031
gb|BE601555.2|BE601555 HVSMEh0098G14f Hordeum vulgare 5-45 ... 135 3e-030
gb|BU989662.1|BU989662 HF22F18r HF Hordeum vulgare subsp. v... 94 1e-017
gb|BU990273.1|BU990273 HF24J09r HF Hordeum vulgare subsp. v... 94 1e-017
gb|CB859330.1|CB859330 HI10C07w HI Hordeum vulgare subsp. v... 94 1e-017
gb|AV834625.1|AV834625 AV834625 K. Sato unpublished cDNA li... 90 2e-016
gb|BQ768491.1|BQ768491 EBro08_SQ011_I24_R root, 3 week, dro... 86 3e-015
gb|BG418110.1|BG418110 HVSMEk0021F18f Hordeum vulgare testa... 58 6e-007
gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA li... 54 9e-006
gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Le... 40 0.14
gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots... 40 0.14
gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedl... 40 0.14
gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA li... 40 0.14
gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA li... 40 0.14
gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. v... 40 0.14
gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. v... 40 0.14
gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed D... 40 0.14
gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate sy... 40 0.14
>gb|BG416908.2|BG416908 HVSMEk0015C11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015C11f, mRNA sequence
Length = 488
Score = 303 bits (153), Expect = 6e-081
Identities = 399/481 (82%)
Strand = Plus / Plus
Query: 61 atccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatc 120
|||||||||||| || || |||||||||| |||||| ||||| ||||| ||||| ||||
Sbjct: 1 atccatcttcaaattcagaagacatgcttagccctgccgagcttccatttatgatcgatc 60
Query: 121 ttgattatcactcccaaattgaatatcgctggggaggagaaggtttaaggaagacattaa 180
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 ttgattatcactctcagattcaatatcgctggggaggagaaggtttaaggaagacactaa 120
Query: 181 ttcgttgggcagctgagaaaaacaaagaaaggggacaaaaaatatttattgaggatgaag 240
||||||||||||| || || || | || ||||||||| || | ||| ||| ||||| |
Sbjct: 121 ttcgttgggcagcagaaaagaatagcgagaggggacaagaagcagttactgaagatgacg 180
Query: 241 aatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgcacctcctg 300
|||| |||||||| ||||||||||| ||||||| | ||||||| || | |||||||
Sbjct: 181 aatgttcatccacttactgcatttcttttaaagtgaagaatactgaggccgtccctcctg 240
Query: 301 tgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttgtacagcc 360
||||||| |||| | |||||||||||| |||||| |||| || ||||| ||||||||||
Sbjct: 241 tgaaggatcttagaaagacaatgagaattcaagcattgcggtgtcatgtattgtacagcc 300
Query: 361 atgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggctttaaggt 420
||||||| ||||||||||| | || |||||| | || || || || || || ||||||
Sbjct: 301 atgatggcagcaagttgaacttcatacctgttctagcatcacgatcccaagcactaaggt 360
Query: 421 atttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtg 480
| |||||||| | |||||||||||||||||||| || || ||| |||| ||||| | |
Sbjct: 361 acttgtatataaggtggggggtagagctgtcaaagatgacggtggttgttggtgaaagcg 420
Query: 481 gtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggct 540
| || |||||||||||||| ||||||||||| |||| || || ||||||||||||||||
Sbjct: 421 gcgatacagattatgaagggctacttggagggatgcagaagaccatcatactcaaaggct 480
Query: 541 c 541
|
Sbjct: 481 c 481
>gb|BQ767300.1|BQ767300 EBro08_SQ008_C18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_C18 5', mRNA sequence
Length = 629
Score = 188 bits (95), Expect = 2e-046
Identities = 320/395 (81%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||| ||||| |||||||| ||||||||||| ||||||| | ||||||| || |
Sbjct: 58 gatgacgaatgttcatccacttactgcatttcttttaaagtgaagaatactgaggccgtc 117
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
|||||||||||||| |||| | |||||||||||| |||||| |||| || ||||| |||
Sbjct: 118 cctcctgtgaaggatcttagaaagacaatgagaattcaagcattgcggtgtcatgtattg 177
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
|||||||||||||| ||||||||||| | || |||||| | || || || || || |||
Sbjct: 178 tacagccatgatggcagcaagttgaacttcatacctgttctagcatcacgatcccaagct 237
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| | ||||||||||||||||| || || || ||| |||| |||
Sbjct: 238 ctaaggtacttgtatataaggtggggggtagagctgtcgaagatgacggtggttgttggt 297
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| | || || |||||||||||||| |||||||||||| |||| || || |||||||||
Sbjct: 298 gaaagcggcgatacagattatgaagggctacttggaggcatgcagaagaccatcatactc 357
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaa 593
|||||||| || ||| | | |||||||| ||||||| |||||||||||| |
Sbjct: 358 aaaggctcatttaattccgtgccaaaccagcttcatgccgccagaagctattcgctagag 417
Query: 594 gatgttgtatcctttgacaaacaaggaattgcttc 628
||||||||||| |||||||| | ||||||||||||
Sbjct: 418 gatgttgtatcatttgacaagccaggaattgcttc 452
>gb|CA015292.1|CA015292 HT13N20r HT Hordeum vulgare subsp. vulgare cDNA clone HT13N20
5-PRIME, mRNA sequence
Length = 544
Score = 180 bits (91), Expect = 6e-044
Identities = 358/447 (80%)
Strand = Plus / Plus
Query: 234 gatgaagaatgctcatccacctactgcatttcatttaaagggtccaatactgcagctgca 293
||||| ||||| |||||||| ||||||||||| ||||||| | ||||||| || |
Sbjct: 20 gatgacgaatgttcatccacttactgcatttcttttaaagtgaagaatactgaggccgtc 79
Query: 294 cctcctgtgaaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttg 353
|||||||||||||| |||| | ||||||| |||| |||||| |||| || ||||| |||
Sbjct: 80 cctcctgtgaaggatcttagaaagacaatgcgaattcaagcattgcggtgtcatgtattg 139
Query: 354 tacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggct 413
|||||||||||||| ||||||||||| | || |||||| | || || || || || ||
Sbjct: 140 tacagccatgatggcagcaagttgaacttcatacctgttctagcatcacgatcccaagca 199
Query: 414 ttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggt 473
||||||| |||||||| | ||||||||||||||||| || || || ||| |||| |||
Sbjct: 200 ctaaggtacttgtatataaggtggggggtagagctgtcgaagatgacggtggttgttggt 259
Query: 474 gagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatactc 533
|| | || || |||||||||||||| |||||||||||| |||| || || |||||||||
Sbjct: 260 gaaagcggcgatacagattatgaagggctacttggaggcatgcagaagaccatcatactc 319
Query: 534 aaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaa 593
|||||||| || ||| | | |||||||| ||||||| |||||||||||| |
Sbjct: 320 aaaggctcatttaattccgtgccaaaccagcttcatgccgccagaagctattcgctagag 379
Query: 594 gatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaat 653
||||||||||| |||||||| | |||||||||||| | ||||| ||| ||||| ||
Sbjct: 380 gatgttgtatcgtttgacaagccaggaattgcttccgtcgagggttattccccagataac 439
Query: 654 ctaaagtcagctctacggcaatttggt 680
||||| |||||||||| |||||||||
Sbjct: 440 ctaaaatcagctctacaacaatttggt 466
>gb|BJ468331.1|BJ468331 BJ468331 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e11 3', mRNA sequence
Length = 726
Score = 141 bits (71), Expect = 5e-032
Identities = 281/351 (80%)
Strand = Plus / Minus
Query: 330 caagcactgcgttgccatgttttgtacagccatgatggtagcaagttgaatgtaattcct 389
|||||| |||| || ||||| ||||||||||||||||| ||||||||||| | || |||
Sbjct: 723 caagcattgcggtgtcatgtattgtacagccatgatggcagcaagttgaacttcatacct 664
Query: 390 gttttggcttctcgctcacaggctttaaggtatttgtatatccgatggggggtagagctg 449
||| | || || || || || || ||||||| |||||||| | |||||||||||||||
Sbjct: 663 gttctagcatcacgatcccaagcactaaggtacttgtatataaggtggggggtagagctg 604
Query: 450 tcaaacatcaccgtgattgtcggtgagtgtggtgacacagattatgaaggactacttgga 509
|| || || || ||| |||| ||||| | || || |||||||||||||| |||||||||
Sbjct: 603 tcgaagatgacggtggttgttggtgaaagcggcgatacagattatgaagggctacttgga 544
Query: 510 ggcgtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaaccaagttcat 569
||| |||| || || ||||||||||||||||| || ||| | | |||||||| |||||
Sbjct: 543 ggcatgcagaagaccatcatactcaaaggctcatttaattccgtgccaaaccagcttcat 484
Query: 570 gctaacagaagctattcatcccaagatgttgtatcctttgacaaacaaggaattgcttca 629
|| |||||||||||| | ||||||||||| |||||||| | ||||||||||||
Sbjct: 483 gccgccagaagctattcgctagaggatgttgtatcgtttgacaagccaggaattgcttcc 424
Query: 630 attgagggatatggtccagacaatctaaagtcagctctacggcaatttggt 680
| ||||| ||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 423 gtcgagggttattccccagataacctaaaatcagctctacaacaatttggt 373
>gb|BI950175.1|BI950175 HVSMEl0019E11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0019E11f, mRNA sequence
Length = 470
Score = 139 bits (70), Expect = 2e-031
Identities = 247/306 (80%)
Strand = Plus / Plus
Query: 323 gagaatacaagcactgcgttgccatgttttgtacagccatgatggtagcaagttgaatgt 382
|||||| |||||| |||| || ||||| ||||||||||||||||| ||||||||||| |
Sbjct: 1 gagaattcaagcattgcggtgtcatgtattgtacagccatgatggcagcaagttgaactt 60
Query: 383 aattcctgttttggcttctcgctcacaggctttaaggtatttgtatatccgatggggggt 442
|| |||||| | || || || || || || ||||||| |||||||| | ||||||||
Sbjct: 61 catacctgttctagcatcacgatcccaagcactaaggtacttgtatataaggtggggggt 120
Query: 443 agagctgtcaaacatcaccgtgattgtcggtgagtgtggtgacacagattatgaaggact 502
|||||||||||| || || ||| |||| ||||| || || |||||||||||||| ||
Sbjct: 121 agagctgtcaaagatgacggtggttgttggtgaaaacggcgatacagattatgaagggct 180
Query: 503 acttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaacca 562
||||||||| |||| || || ||||||||||||||||| || ||| | | ||||||||
Sbjct: 181 acttggagggatgcagaagaccatcatactcaaaggctcatttaattccgtgccaaacca 240
Query: 563 agttcatgctaacagaagctattcatcccaagatgttgtatcctttgacaaacaaggaat 622
| ||||||| |||||||||||| | ||||||||||| |||||||| | ||||||
Sbjct: 241 acttcatgccgccagaagctattcgctagaggatgttgtatcgtttgacaagccaggaat 300
Query: 623 tgcttc 628
||||||
Sbjct: 301 tgcttc 306
>gb|BE601555.2|BE601555 HVSMEh0098G14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098G14f, mRNA sequence
Length = 636
Score = 135 bits (68), Expect = 3e-030
Identities = 269/336 (80%)
Strand = Plus / Plus
Query: 345 catgttttgtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgc 404
||||| ||||||||||||||||| ||||||||||| | || |||||| | || || ||
Sbjct: 8 catgtattgtacagccatgatggcagcaagttgaacttcatacctgttctagcatcacga 67
Query: 405 tcacaggctttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtg 464
|| || || ||||||| |||||||| | |||||||||||||||||||| || || |||
Sbjct: 68 tcccaagcactaaggtacttgtatataaggtggggggtagagctgtcaaagatgacggtg 127
Query: 465 attgtcggtgagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaact 524
|||| ||||| | || || |||||||||||||| ||||||||||| |||| || ||
Sbjct: 128 gttgttggtgaaagcggcgatacagattatgaagggctacttggagggatgcagaagacc 187
Query: 525 atcatactcaaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctat 584
||||||||||||||||| || ||| | | |||||||| ||||||| ||||||||||
Sbjct: 188 atcatactcaaaggctcatttaattccgtgccaaaccagcttcatgccgccagaagctat 247
Query: 585 tcatcccaagatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggt 644
|| | ||||||||||| |||||||| | |||||||||||| | ||||| |||
Sbjct: 248 tcgctagaggatgttgtatcgtttgacaagccaggaattgcttccgtcgagggttattcc 307
Query: 645 ccagacaatctaaagtcagctctacggcaatttggt 680
||||| || ||||| |||||||||| |||||||||
Sbjct: 308 ccagataacctaaaatcagctctacaacaatttggt 343
>gb|BU989662.1|BU989662 HF22F18r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F18
5-PRIME, mRNA sequence
Length = 484
Score = 93.7 bits (47), Expect = 1e-017
Identities = 158/195 (81%)
Strand = Plus / Plus
Query: 486 acagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttc 545
|||||||||||||| |||||||||||| |||| || || ||||||||||||||||| ||
Sbjct: 4 acagattatgaagggctacttggaggcatgcagaagaccatcatactcaaaggctcattt 63
Query: 546 aatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcc 605
||| | | |||||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 64 aattccgtgccaaaccagcttcatgccgccagaagctattcgctagaggatgttgtatcg 123
Query: 606 tttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagct 665
|||||||| | |||||||||||| | ||||| ||| ||||| || ||||| ||||||
Sbjct: 124 tttgacaagccaggaattgcttccgtcgagggttattccccagataacctaaaatcagct 183
Query: 666 ctacggcaatttggt 680
|||| |||||||||
Sbjct: 184 ctacaacaatttggt 198
>gb|BU990273.1|BU990273 HF24J09r HF Hordeum vulgare subsp. vulgare cDNA clone HF24J09
5-PRIME, mRNA sequence
Length = 480
Score = 93.7 bits (47), Expect = 1e-017
Identities = 158/195 (81%)
Strand = Plus / Plus
Query: 486 acagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttc 545
|||||||||||||| |||||||||||| |||| || || ||||||||||||||||| ||
Sbjct: 4 acagattatgaagggctacttggaggcatgcagaagaccatcatactcaaaggctcattt 63
Query: 546 aatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcc 605
||| | | |||||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 64 aattccgtgccaaaccagcttcatgccgccagaagctattcgctagaggatgttgtatcg 123
Query: 606 tttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagct 665
|||||||| | |||||||||||| | ||||| ||| ||||| || ||||| ||||||
Sbjct: 124 tttgacaagccaggaattgcttccgtcgagggttattccccagataacctaaaatcagct 183
Query: 666 ctacggcaatttggt 680
|||| |||||||||
Sbjct: 184 ctacaacaatttggt 198
>gb|CB859330.1|CB859330 HI10C07w HI Hordeum vulgare subsp. vulgare cDNA clone HI10C07
3-PRIME, mRNA sequence
Length = 590
Score = 93.7 bits (47), Expect = 1e-017
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 486 acagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttc 545
|||||||||||||| |||||||||||| |||| || || ||||||||||||||||| ||
Sbjct: 587 acagattatgaagggctacttggaggcatgcagaagaccatcatactcaaaggctcattt 528
Query: 546 aatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcc 605
||| | | |||||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 527 aattccgtgccaaaccagcttcatgccgccagaagctattcgctagaggatgttgtatcg 468
Query: 606 tttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagct 665
|||||||| | |||||||||||| | ||||| ||| ||||| || ||||| ||||||
Sbjct: 467 tttgacaagccaggaattgcttccgtcgagggttattccccagataacctaaaatcagct 408
Query: 666 ctacggcaatttggt 680
|||| |||||||||
Sbjct: 407 ctacaacaatttggt 393
>gb|AV834625.1|AV834625 AV834625 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags18o22, mRNA sequence
Length = 569
Score = 89.7 bits (45), Expect = 2e-016
Identities = 157/195 (80%)
Strand = Plus / Minus
Query: 486 acagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttc 545
|||||||||||||| |||||||||||| |||| || || |||||||||||||| || ||
Sbjct: 541 acagattatgaagggctacttggaggcatgcagaagaccatcatactcaaaggntcattt 482
Query: 546 aatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcc 605
||| | | |||||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 481 aattccgtgccaaaccagcttcatgccgccagaagctattcgctagaggatgttgtatcg 422
Query: 606 tttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagct 665
|||||||| | |||||||||||| | ||||| ||| ||||| || ||||| ||||||
Sbjct: 421 tttgacaagccaggaattgcttcngtcgagggttattccccagataacctaaaatcagct 362
Query: 666 ctacggcaatttggt 680
|||| |||||||||
Sbjct: 361 ctacaacaatttggt 347
>gb|BQ768491.1|BQ768491 EBro08_SQ011_I24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_I24 5', mRNA sequence
Length = 632
Score = 85.7 bits (43), Expect = 3e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 486 acagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttc 545
|||||||||||||| |||||||||||| |||| || || ||||||||||||||||| ||
Sbjct: 38 acagattatgaagggctacttggaggcatgcagaagaccatcatactcaaaggctcattt 97
Query: 546 aatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcc 605
||| | | |||||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 98 aattccgtgccaaaccagcttcatgccgccagaagctattcgctagaggatgttgtatca 157
Query: 606 tttgacaaacaaggaattgcttc 628
|||||||| | ||||||||||||
Sbjct: 158 tttgacaagccaggaattgcttc 180
>gb|BG418110.1|BG418110 HVSMEk0021F18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0021F18f, mRNA sequence
Length = 668
Score = 58.0 bits (29), Expect = 6e-007
Identities = 152/193 (78%)
Strand = Plus / Plus
Query: 435 tggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtggtgacacagattat 494
||||||||||||||||||||||| || || |||| ||||| | | || || |||||
Sbjct: 88 tggggggtagagctgtcaaacatgacagtagttgttggtgaaagctgcgattcacattat 147
Query: 495 gaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactgct 554
||| | ||||||||||| |||| || || ||||||||||||||||| || ||| | |
Sbjct: 148 gaacggctacttggagggatgcagaagaccatcatactcaaaggctcatttaattccgtg 207
Query: 555 ccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttgacaaa 614
|||||||| ||||||| | || ||||||||| | ||||||||||| ||||||||
Sbjct: 208 ccaaaccagcttcatgccaccacaagctattcgctaaaggatgttgtatcgtttgacaag 267
Query: 615 caaggaattgctt 627
| | |||||||||
Sbjct: 268 ccacgaattgctt 280
>gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags18o22, mRNA sequence
Length = 629
Score = 54.0 bits (27), Expect = 9e-006
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 21 tttgntgccttcatatgcaacagnngnantgatctttgnnatccatcttcaa 72
|||| |||||||||||||| ||| | | ||||||||| ||||||||||||
Sbjct: 577 tttgatgccttcatatgcagcagtggcagtgatctttgctatccatcttcaa 628
>gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 138 attgaatatcgctggggaggagaaggtttaag 169
||||| ||||| ||||||||||||||| ||||
Sbjct: 248 attgagtatcgttggggaggagaaggtctaag 279
>gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01G06T 5', mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 138 attgaatatcgctggggaggagaaggtttaag 169
||||| ||||| ||||||||||||||| ||||
Sbjct: 406 attgagtatcgttggggaggagaaggtctaag 437
>gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016J09f, mRNA sequence
Length = 818
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaag 169
||||||||||||||||||||
Sbjct: 480 tggggaggagaaggtttaag 499
>gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26l03 3', mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 138 attgaatatcgctggggaggagaaggtttaag 169
||||| ||||| ||||||||||||||| ||||
Sbjct: 614 attgagtatcgttggggaggagaaggtctaag 583
>gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g04 3', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaag 169
||||||||||||||||||||
Sbjct: 620 tggggaggagaaggtttaag 601
>gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09H08
5-PRIME, mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaag 169
||||||||||||||||||||
Sbjct: 545 tggggaggagaaggtttaag 564
>gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. vulgare cDNA clone HF05E11
5-PRIME, mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 tggggaggagaaggtttaag 169
||||||||||||||||||||
Sbjct: 109 tggggaggagaaggtttaag 128
>gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01cb12, mRNA sequence
Length = 898
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 tggggaggagaaggtttaag 169
||||||||||||||||||||
Sbjct: 691 tggggaggagaaggtttaag 672
>gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate synthase mRNA, partial cds
Length = 2085
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 138 attgaatatcgctggggaggagaaggtttaag 169
||||| ||||| ||||||||||||||| ||||
Sbjct: 1252 attgagtatcgttggggaggagaaggtctaag 1283
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,222
Number of Sequences: 312970
Number of extensions: 69222
Number of successful extensions: 18338
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18287
Number of HSP's gapped (non-prelim): 48
length of query: 1005
length of database: 175,134,539
effective HSP length: 19
effective length of query: 986
effective length of database: 169,188,109
effective search space: 166819475474
effective search space used: 166819475474
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)