BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3099514.2.1
(547 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI956349.1|BI956349 HVSMEn0002L14f Hordeum vulgare rachi... 80 9e-014
gb|AW982186.2|AW982186 HVSMEg0002C15f Hordeum vulgare pre-a... 74 5e-012
gb|AW983288.2|AW983288 HVSMEg0010B12f Hordeum vulgare pre-a... 74 5e-012
gb|BI958671.1|BI958671 HVSMEn0016C08f Hordeum vulgare rachi... 74 5e-012
gb|BG418579.1|BG418579 HVSMEk0023E16f Hordeum vulgare testa... 72 2e-011
gb|AL506754.1|AL506754 AL506754 Hordeum vulgare Barke devel... 70 8e-011
gb|AL506985.1|AL506985 AL506985 Hordeum vulgare Barke devel... 70 8e-011
gb|AL507134.1|AL507134 AL507134 Hordeum vulgare Barke devel... 70 8e-011
gb|AL508179.1|AL508179 AL508179 Hordeum vulgare Barke devel... 70 8e-011
gb|AL508823.1|AL508823 AL508823 Hordeum vulgare Barke devel... 70 8e-011
gb|AL509925.1|AL509925 AL509925 Hordeum vulgare Barke devel... 70 8e-011
gb|AL511708.1|AL511708 AL511708 Hordeum vulgare Barke devel... 70 8e-011
gb|AL512089.1|AL512089 AL512089 Hordeum vulgare Barke devel... 70 8e-011
gb|BG416406.1|BG416406 HVSMEk0012B04f Hordeum vulgare testa... 70 8e-011
gb|BG369570.2|BG369570 HVSMEi0024P20f Hordeum vulgare 20 DA... 70 8e-011
gb|BG414977.2|BG414977 HVSMEk0004I09f Hordeum vulgare testa... 70 8e-011
gb|AJ463139.1|AJ463139 AJ463139 S00002 Hordeum vulgare subs... 70 8e-011
gb|BQ656255.1|BQ656255 HA05C18u HA Hordeum vulgare subsp. v... 70 8e-011
gb|BQ663528.1|BQ663528 HU03A05u HU Hordeum vulgare subsp. v... 70 8e-011
gb|BQ663621.1|BQ663621 HU03G06u HU Hordeum vulgare subsp. v... 70 8e-011
gb|BQ663665.1|BQ663665 HU03I09u HU Hordeum vulgare subsp. v... 70 8e-011
gb|BQ663764.1|BQ663764 HU03P12u HU Hordeum vulgare subsp. v... 70 8e-011
gb|BQ739984.1|BQ739984 HC01H04 HC Hordeum vulgare subsp. vu... 70 8e-011
gb|BI778810.2|BI778810 EBro01_SQ001_J10_R root, 3 week, hyd... 70 8e-011
gb|BM372166.2|BM372166 EBro03_SQ004_D08_R root, 3 week, wat... 70 8e-011
gb|BQ763033.1|BQ763033 EBro02_SQ006_O24_R root, 3 week, hyd... 70 8e-011
gb|BQ763039.1|BQ763039 EBro02_SQ006_P24_R root, 3 week, hyd... 70 8e-011
gb|BQ765282.1|BQ765282 EBro03_SQ006_A19_R root, 3 week, wat... 70 8e-011
gb|BQ765987.1|BQ765987 EBro03_SQ008_P18_R root, 3 week, wat... 70 8e-011
gb|BQ766074.1|BQ766074 EBro03_SQ008_P22_R root, 3 week, wat... 70 8e-011
gb|BU967663.1|BU967663 HB05A08r BC Hordeum vulgare subsp. v... 70 8e-011
gb|BU967723.1|BU967723 HB05D07r BC Hordeum vulgare subsp. v... 70 8e-011
gb|BU968075.1|BU968075 HB06F12r BC Hordeum vulgare subsp. v... 70 8e-011
gb|BU968978.1|BU968978 HB10C15r BC Hordeum vulgare subsp. v... 70 8e-011
gb|BU975831.1|BU975831 HB32G24r BC Hordeum vulgare subsp. v... 70 8e-011
gb|BU983536.1|BU983536 HA30B06r HA Hordeum vulgare subsp. v... 70 8e-011
gb|BU986345.1|BU986345 HF11H21r HF Hordeum vulgare subsp. v... 70 8e-011
gb|BU988196.1|BU988196 HF16O23r HF Hordeum vulgare subsp. v... 70 8e-011
gb|CA000573.1|CA000573 HS08B05u HS Hordeum vulgare subsp. v... 70 8e-011
gb|CA005735.1|CA005735 HU08N06u HU Hordeum vulgare subsp. v... 70 8e-011
gb|CA010000.1|CA010000 HT12E14u HT Hordeum vulgare subsp. v... 70 8e-011
gb|CA011241.1|CA011241 HT06L10u HT Hordeum vulgare subsp. v... 70 8e-011
gb|CA014591.1|CA014591 HT11M11r HT Hordeum vulgare subsp. v... 70 8e-011
gb|CB875605.1|CB875605 HX08M24w HX Hordeum vulgare subsp. v... 70 8e-011
gb|CB878688.1|CB878688 HP09H14T HP Hordeum vulgare subsp. v... 70 8e-011
gb|CB880044.1|CB880044 HM05F03w HM Hordeum vulgare subsp. v... 70 8e-011
gb|CB882795.1|CB882795 HL02N21w HL Hordeum vulgare subsp. v... 70 8e-011
gb|CK125339.1|CK125339 BES1824107l18 BES1824 Hordeum vulgar... 70 8e-011
gb|CK125495.1|CK125495 BES1824108m09 BES1824 Hordeum vulgar... 70 8e-011
emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase 70 8e-011
gb|AL506574.1|AL506574 AL506574 Hordeum vulgare Barke devel... 68 3e-010
gb|AL506937.1|AL506937 AL506937 Hordeum vulgare Barke devel... 68 3e-010
gb|AL507183.1|AL507183 AL507183 Hordeum vulgare Barke devel... 68 3e-010
gb|AL507545.1|AL507545 AL507545 Hordeum vulgare Barke devel... 68 3e-010
gb|AL508508.1|AL508508 AL508508 Hordeum vulgare Barke devel... 68 3e-010
gb|AL509551.1|AL509551 AL509551 Hordeum vulgare Barke devel... 68 3e-010
gb|AL509749.1|AL509749 AL509749 Hordeum vulgare Barke devel... 68 3e-010
gb|AL510205.1|AL510205 AL510205 Hordeum vulgare Barke devel... 68 3e-010
gb|AL510640.1|AL510640 AL510640 Hordeum vulgare Barke devel... 68 3e-010
gb|AL511569.1|AL511569 AL511569 Hordeum vulgare Barke devel... 68 3e-010
gb|BG418363.2|BG418363 HVSMEk0022H07f Hordeum vulgare testa... 68 3e-010
gb|BQ657656.1|BQ657656 HA07I08u HA Hordeum vulgare subsp. v... 68 3e-010
gb|BQ657862.1|BQ657862 HA06K19u HA Hordeum vulgare subsp. v... 68 3e-010
gb|BM368131.2|BM368131 EBed01_SQ002_E06_R endosperm, 6 DPA,... 68 3e-010
gb|BM440955.2|BM440955 EBed02_SQ002_A03_R endosperm, 8 DPA,... 68 3e-010
gb|BM441123.2|BM441123 EBed02_SQ002_H22_R endosperm, 8 DPA,... 68 3e-010
gb|BM441305.2|BM441305 EBed02_SQ002_P21_R endosperm, 8 DPA,... 68 3e-010
gb|BI780819.2|BI780819 EBma05_SQ001_A08_R maternal, 12 DPA,... 68 3e-010
gb|BQ754993.1|BQ754993 EBed02_SQ003_G14_R endosperm, 8 DPA,... 68 3e-010
gb|BU977902.1|BU977902 HA12D23r HA Hordeum vulgare subsp. v... 68 3e-010
gb|BU977903.1|BU977903 HA12D23u HA Hordeum vulgare subsp. v... 68 3e-010
gb|BU981301.1|BU981301 HA23D11r HA Hordeum vulgare subsp. v... 68 3e-010
gb|BU982148.1|BU982148 HA25K14r HA Hordeum vulgare subsp. v... 68 3e-010
gb|BU983395.1|BU983395 HA29J11r HA Hordeum vulgare subsp. v... 68 3e-010
gb|BU994091.1|BU994091 HM05L09r HM Hordeum vulgare subsp. v... 68 3e-010
gb|BU994650.1|BU994650 HM07L22r HM Hordeum vulgare subsp. v... 68 3e-010
gb|CB877551.1|CB877551 HP05F11T HP Hordeum vulgare subsp. v... 68 3e-010
gb|CB880751.1|CB880751 HM07L09w HM Hordeum vulgare subsp. v... 68 3e-010
gb|CV059399.1|CV059399 BNEL47f9 Barley EST endosperm librar... 68 3e-010
gb|CK123919.1|CK123919 BES1824106c09 BES1824 Hordeum vulgar... 68 3e-010
gb|CK124243.1|CK124243 BES1824108b10 BES1824 Hordeum vulgar... 68 3e-010
emb|X69931.1|HVRNASS H.vulgare mRNA for sucrose synthase 68 3e-010
gb|AL509343.1|AL509343 AL509343 Hordeum vulgare Barke devel... 66 1e-009
gb|AL502619.1|AL502619 AL502619 Hordeum vulgare Barke roots... 64 5e-009
gb|AL510755.1|AL510755 AL510755 Hordeum vulgare Barke devel... 64 5e-009
gb|BE602450.2|BE602450 HVSMEh0098P06f Hordeum vulgare 5-45 ... 62 2e-008
gb|BI956220.1|BI956220 HVSMEn0001D19f Hordeum vulgare rachi... 62 2e-008
gb|BG418826.1|BG418826 HVSMEk0024K01f Hordeum vulgare testa... 62 2e-008
gb|AV927691.1|AV927691 AV927691 K. Sato unpublished cDNA li... 62 2e-008
gb|AV930471.1|AV930471 AV930471 K. Sato unpublished cDNA li... 62 2e-008
gb|AV930484.1|AV930484 AV930484 K. Sato unpublished cDNA li... 62 2e-008
gb|AV931344.1|AV931344 AV931344 K. Sato unpublished cDNA li... 62 2e-008
gb|AV931842.1|AV931842 AV931842 K. Sato unpublished cDNA li... 62 2e-008
gb|AV932215.1|AV932215 AV932215 K. Sato unpublished cDNA li... 62 2e-008
gb|AV932216.1|AV932216 AV932216 K. Sato unpublished cDNA li... 62 2e-008
gb|AV933009.1|AV933009 AV933009 K. Sato unpublished cDNA li... 62 2e-008
gb|AV933021.1|AV933021 AV933021 K. Sato unpublished cDNA li... 62 2e-008
gb|AV933141.1|AV933141 AV933141 K. Sato unpublished cDNA li... 62 2e-008
gb|AV935055.1|AV935055 AV935055 K. Sato unpublished cDNA li... 62 2e-008
gb|AV935056.1|AV935056 AV935056 K. Sato unpublished cDNA li... 62 2e-008
gb|AV935774.1|AV935774 AV935774 K. Sato unpublished cDNA li... 62 2e-008
gb|AV936274.1|AV936274 AV936274 K. Sato unpublished cDNA li... 62 2e-008
gb|AV936695.1|AV936695 AV936695 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ469105.1|BJ469105 BJ469105 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ471943.1|BJ471943 BJ471943 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ472040.1|BJ472040 BJ472040 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ474322.1|BJ474322 BJ474322 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ476068.1|BJ476068 BJ476068 K. Sato unpublished cDNA li... 62 2e-008
gb|BU970650.1|BU970650 HB15E14r BC Hordeum vulgare subsp. v... 62 2e-008
gb|AL507886.1|AL507886 AL507886 Hordeum vulgare Barke devel... 60 8e-008
gb|AL512052.1|AL512052 AL512052 Hordeum vulgare Barke devel... 60 8e-008
gb|AL508575.1|AL508575 AL508575 Hordeum vulgare Barke devel... 58 3e-007
gb|BI958579.1|BI958579 HVSMEn0015L19f Hordeum vulgare rachi... 58 3e-007
gb|AV930491.1|AV930491 AV930491 K. Sato unpublished cDNA li... 56 1e-006
gb|BU970742.1|BU970742 HB15I19r BC Hordeum vulgare subsp. v... 56 1e-006
gb|AL507987.1|AL507987 AL507987 Hordeum vulgare Barke devel... 54 5e-006
gb|AL510362.1|AL510362 AL510362 Hordeum vulgare Barke devel... 54 5e-006
gb|AL511119.1|AL511119 AL511119 Hordeum vulgare Barke devel... 54 5e-006
gb|AL511249.1|AL511249 AL511249 Hordeum vulgare Barke devel... 54 5e-006
gb|AL511771.1|AL511771 AL511771 Hordeum vulgare Barke devel... 54 5e-006
gb|AL511948.1|AL511948 AL511948 Hordeum vulgare Barke devel... 54 5e-006
gb|BQ657205.1|BQ657205 HA09E08u HA Hordeum vulgare subsp. v... 54 5e-006
gb|BQ658146.1|BQ658146 HA05I13u HA Hordeum vulgare subsp. v... 54 5e-006
gb|BQ765365.1|BQ765365 EBro03_SQ006_P20_R root, 3 week, wat... 52 2e-005
gb|CA005161.1|CA005161 HU11L08u HU Hordeum vulgare subsp. v... 52 2e-005
gb|BG415984.2|BG415984 HVSMEk0009F01f Hordeum vulgare testa... 50 8e-005
gb|BU969936.1|BU969936 HB13B14r BC Hordeum vulgare subsp. v... 50 8e-005
emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene 50 8e-005
gb|AL511205.1|AL511205 AL511205 Hordeum vulgare Barke devel... 48 3e-004
gb|BF620996.3|BF620996 HVSMEa0003J12f Hordeum vulgare seedl... 48 3e-004
gb|BG368969.2|BG368969 HVSMEi0021O24f Hordeum vulgare 20 DA... 48 3e-004
gb|AV934022.1|AV934022 AV934022 K. Sato unpublished cDNA li... 48 3e-004
gb|BQ762441.1|BQ762441 EBro01_SQ005_I21 _R root, 3 week, hy... 48 3e-004
gb|L43955.1|BLYAG Hordeum vulgare (clone ABC465) STS mRNA, ... 48 3e-004
gb|AL506883.1|AL506883 AL506883 Hordeum vulgare Barke devel... 44 0.005
gb|AL510305.1|AL510305 AL510305 Hordeum vulgare Barke devel... 44 0.005
gb|BI960050.1|BI960050 HVSMEn0023A04f Hordeum vulgare rachi... 44 0.005
gb|DR421033.1|DR421033 BC41 14 DAF Barley kernel cDNA libra... 42 0.019
gb|AL510279.1|AL510279 AL510279 Hordeum vulgare Barke devel... 40 0.074
gb|AL511949.1|AL511949 AL511949 Hordeum vulgare Barke devel... 40 0.074
gb|BG417785.1|BG417785 HVSMEk0019I06f Hordeum vulgare testa... 40 0.074
gb|BG415456.2|BG415456 HVSMEk0006I23f Hordeum vulgare testa... 40 0.074
gb|BQ470019.1|BQ470019 HX01I13T HX Hordeum vulgare subsp. v... 40 0.074
gb|AL511782.1|AL511782 AL511782 Hordeum vulgare Barke devel... 38 0.29
gb|AV933030.1|AV933030 AV933030 K. Sato unpublished cDNA li... 38 0.29
gb|BJ475342.1|BJ475342 BJ475342 K. Sato unpublished cDNA li... 38 0.29
gb|BQ664983.1|BQ664983 HX01K13w HX Hordeum vulgare subsp. v... 38 0.29
gb|CA000310.1|CA000310 HS08P20u HS Hordeum vulgare subsp. v... 38 0.29
gb|CA001063.1|CA001063 HS05J24u HS Hordeum vulgare subsp. v... 38 0.29
gb|CA001197.1|CA001197 HS05A10u HS Hordeum vulgare subsp. v... 38 0.29
>gb|BI956349.1|BI956349 HVSMEn0002L14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L14f, mRNA sequence
Length = 847
Score = 79.8 bits (40), Expect = 9e-014
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 287 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 346
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | |||||||| |||||||||
Sbjct: 347 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgctacctggagatgttc 406
Query: 179 taca 182
||||
Sbjct: 407 taca 410
>gb|AW982186.2|AW982186 HVSMEg0002C15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002C15f, mRNA sequence
Length = 898
Score = 73.8 bits (37), Expect = 5e-012
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||| ||||| |||||| | ||||| |||||| |||||| || |||| || |||||
Sbjct: 479 gagaaatacacctggaagctttactccgagaggctgatgaccctcaccggtgtgtacggg 420
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatg 175
|||||||||||||| || || ||||||||||| ||||| | |||||||||||||||
Sbjct: 419 ttctggaagtacgtctccaacctcgagaggcgcgagacccgccgctaccttgagatg 363
>gb|AW983288.2|AW983288 HVSMEg0010B12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010B12f, mRNA sequence
Length = 824
Score = 73.8 bits (37), Expect = 5e-012
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||| ||||| |||||| | ||||| |||||| |||||| || |||| || |||||
Sbjct: 176 gagaaatacacctggaagctttactccgagaggctgatgaccctcaccggtgtgtacggg 235
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatg 175
|||||||||||||| || || ||||||||||| ||||| | |||||||||||||||
Sbjct: 236 ttctggaagtacgtctccaacctcgagaggcgcgagacccgccgctaccttgagatg 292
>gb|BI958671.1|BI958671 HVSMEn0016C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016C08f, mRNA sequence
Length = 683
Score = 73.8 bits (37), Expect = 5e-012
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||| ||||| |||||| | ||||| |||||| |||||| || |||| || |||||
Sbjct: 340 gagaaatacacctggaagctttactccgagaggctgatgaccctcaccggtgtgtacggg 399
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatg 175
|||||||||||||| || || ||||||||||| ||||| | |||||||||||||||
Sbjct: 400 ttctggaagtacgtctccaacctcgagaggcgcgagacccgccgctaccttgagatg 456
>gb|BG418579.1|BG418579 HVSMEk0023E16f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023E16f, mRNA sequence
Length = 883
Score = 71.9 bits (36), Expect = 2e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 522 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 581
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 582 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgntacctggagatgttc 641
Query: 179 tac 181
|||
Sbjct: 642 tac 644
>gb|AL506754.1|AL506754 AL506754 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C11T 5',
mRNA sequence
Length = 700
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 455 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 396
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 395 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 336
Query: 179 tac 181
|||
Sbjct: 335 tac 333
>gb|AL506985.1|AL506985 AL506985 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N05T 5',
mRNA sequence
Length = 700
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 455 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 396
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 395 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 336
Query: 179 tac 181
|||
Sbjct: 335 tac 333
>gb|AL507134.1|AL507134 AL507134 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05K11T 5',
mRNA sequence
Length = 700
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 474 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 415
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 414 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 355
Query: 179 tac 181
|||
Sbjct: 354 tac 352
>gb|AL508179.1|AL508179 AL508179 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08A05V 5',
mRNA sequence
Length = 700
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 464 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 405
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 404 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 345
Query: 179 tac 181
|||
Sbjct: 344 tac 342
>gb|AL508823.1|AL508823 AL508823 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09O14V 5',
mRNA sequence
Length = 699
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 465 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 406
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 405 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 346
Query: 179 tac 181
|||
Sbjct: 345 tac 343
>gb|AL509925.1|AL509925 AL509925 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03F02u 3',
mRNA sequence
Length = 593
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 476 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 417
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 416 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 357
Query: 179 tac 181
|||
Sbjct: 356 tac 354
>gb|AL511708.1|AL511708 AL511708 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P09u 3',
mRNA sequence
Length = 584
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 460 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 401
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 400 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 341
Query: 179 tac 181
|||
Sbjct: 340 tac 338
>gb|AL512089.1|AL512089 AL512089 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10F20u 3',
mRNA sequence
Length = 456
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 426 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 367
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 366 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 307
Query: 179 tac 181
|||
Sbjct: 306 tac 304
>gb|BG416406.1|BG416406 HVSMEk0012B04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012B04f, mRNA sequence
Length = 687
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 262 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 321
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 322 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 381
Query: 179 tac 181
|||
Sbjct: 382 tac 384
>gb|BG369570.2|BG369570 HVSMEi0024P20f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024P20f, mRNA sequence
Length = 741
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 286 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 345
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 346 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 405
Query: 179 tac 181
|||
Sbjct: 406 tac 408
>gb|BG414977.2|BG414977 HVSMEk0004I09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I09f, mRNA sequence
Length = 542
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 70 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 129
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 130 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 189
Query: 179 tac 181
|||
Sbjct: 190 tac 192
>gb|AJ463139.1|AJ463139 AJ463139 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071A06F1, mRNA sequence
Length = 360
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 100 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 159
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 160 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 219
Query: 179 tac 181
|||
Sbjct: 220 tac 222
>gb|BQ656255.1|BQ656255 HA05C18u HA Hordeum vulgare subsp. vulgare cDNA clone HA05C18
3-PRIME, mRNA sequence
Length = 501
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 449 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 390
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 389 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 330
Query: 179 tac 181
|||
Sbjct: 329 tac 327
>gb|BQ663528.1|BQ663528 HU03A05u HU Hordeum vulgare subsp. vulgare cDNA clone HU03A05
3-PRIME, mRNA sequence
Length = 497
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 449 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 390
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 389 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 330
Query: 179 tac 181
|||
Sbjct: 329 tac 327
>gb|BQ663621.1|BQ663621 HU03G06u HU Hordeum vulgare subsp. vulgare cDNA clone HU03G06
3-PRIME, mRNA sequence
Length = 490
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 442 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 383
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 382 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 323
Query: 179 tac 181
|||
Sbjct: 322 tac 320
>gb|BQ663665.1|BQ663665 HU03I09u HU Hordeum vulgare subsp. vulgare cDNA clone HU03I09
3-PRIME, mRNA sequence
Length = 510
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 440 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 381
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 380 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 321
Query: 179 tac 181
|||
Sbjct: 320 tac 318
>gb|BQ663764.1|BQ663764 HU03P12u HU Hordeum vulgare subsp. vulgare cDNA clone HU03P12
3-PRIME, mRNA sequence
Length = 496
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 448 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 389
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 388 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 329
Query: 179 tac 181
|||
Sbjct: 328 tac 326
>gb|BQ739984.1|BQ739984 HC01H04 HC Hordeum vulgare subsp. vulgare cDNA clone HC01H04
similar to sucrose synthase (EC 2.4.1.13) - barley
(fragment) gi|19108|emb|CAA47264.1| (X66728) sucrose
synthase [Hordeum vulgare], mRNA sequence
Length = 612
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 212 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 271
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 272 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 331
Query: 179 tac 181
|||
Sbjct: 332 tac 334
>gb|BI778810.2|BI778810 EBro01_SQ001_J10_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_J10 5', mRNA sequence
Length = 467
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 298 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 357
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 358 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 417
Query: 179 tac 181
|||
Sbjct: 418 tac 420
>gb|BM372166.2|BM372166 EBro03_SQ004_D08_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_D08 5', mRNA sequence
Length = 459
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 143 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 202
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 203 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 262
Query: 179 tac 181
|||
Sbjct: 263 tac 265
>gb|BQ763033.1|BQ763033 EBro02_SQ006_O24_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_O24 5', mRNA sequence
Length = 679
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 364 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 423
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 424 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 483
Query: 179 tac 181
|||
Sbjct: 484 tac 486
>gb|BQ763039.1|BQ763039 EBro02_SQ006_P24_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_P24 5', mRNA sequence
Length = 664
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 364 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 423
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 424 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 483
Query: 179 tac 181
|||
Sbjct: 484 tac 486
>gb|BQ765282.1|BQ765282 EBro03_SQ006_A19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_A19 5', mRNA sequence
Length = 663
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 495 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 554
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 555 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 614
Query: 179 tac 181
|||
Sbjct: 615 tac 617
>gb|BQ765987.1|BQ765987 EBro03_SQ008_P18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_P18 5', mRNA sequence
Length = 618
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 193 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 252
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 253 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 312
Query: 179 tac 181
|||
Sbjct: 313 tac 315
>gb|BQ766074.1|BQ766074 EBro03_SQ008_P22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_P22 5', mRNA sequence
Length = 610
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 282 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 341
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 342 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 401
Query: 179 tac 181
|||
Sbjct: 402 tac 404
>gb|BU967663.1|BU967663 HB05A08r BC Hordeum vulgare subsp. vulgare cDNA clone HB05A08
5-PRIME, mRNA sequence
Length = 414
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 153 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 212
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 213 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 272
Query: 179 tac 181
|||
Sbjct: 273 tac 275
>gb|BU967723.1|BU967723 HB05D07r BC Hordeum vulgare subsp. vulgare cDNA clone HB05D07
5-PRIME, mRNA sequence
Length = 337
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 153 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 212
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 213 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 272
Query: 179 tac 181
|||
Sbjct: 273 tac 275
>gb|BU968075.1|BU968075 HB06F12r BC Hordeum vulgare subsp. vulgare cDNA clone HB06F12
5-PRIME, mRNA sequence
Length = 439
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 99 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 158
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 159 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 218
Query: 179 tac 181
|||
Sbjct: 219 tac 221
>gb|BU968978.1|BU968978 HB10C15r BC Hordeum vulgare subsp. vulgare cDNA clone HB10C15
5-PRIME, mRNA sequence
Length = 526
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 338 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 397
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 398 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 457
Query: 179 tac 181
|||
Sbjct: 458 tac 460
>gb|BU975831.1|BU975831 HB32G24r BC Hordeum vulgare subsp. vulgare cDNA clone HB32G24
5-PRIME, mRNA sequence
Length = 443
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 108 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 167
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 168 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 227
Query: 179 tac 181
|||
Sbjct: 228 tac 230
>gb|BU983536.1|BU983536 HA30B06r HA Hordeum vulgare subsp. vulgare cDNA clone HA30B06
5-PRIME, mRNA sequence
Length = 603
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 199 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 258
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 259 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 318
Query: 179 tac 181
|||
Sbjct: 319 tac 321
>gb|BU986345.1|BU986345 HF11H21r HF Hordeum vulgare subsp. vulgare cDNA clone HF11H21
5-PRIME, mRNA sequence
Length = 607
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 349 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 408
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 409 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 468
Query: 179 tac 181
|||
Sbjct: 469 tac 471
>gb|BU988196.1|BU988196 HF16O23r HF Hordeum vulgare subsp. vulgare cDNA clone HF16O23
5-PRIME, mRNA sequence
Length = 592
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 230 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 289
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 290 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 349
Query: 179 tac 181
|||
Sbjct: 350 tac 352
>gb|CA000573.1|CA000573 HS08B05u HS Hordeum vulgare subsp. vulgare cDNA clone HS08B05
3-PRIME, mRNA sequence
Length = 556
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 436 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 377
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 376 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 317
Query: 179 tac 181
|||
Sbjct: 316 tac 314
>gb|CA005735.1|CA005735 HU08N06u HU Hordeum vulgare subsp. vulgare cDNA clone HU08N06
3-PRIME, mRNA sequence
Length = 540
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 492 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 433
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 432 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 373
Query: 179 tac 181
|||
Sbjct: 372 tac 370
>gb|CA010000.1|CA010000 HT12E14u HT Hordeum vulgare subsp. vulgare cDNA clone HT12E14
3-PRIME, mRNA sequence
Length = 461
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 435 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 376
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 375 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 316
Query: 179 tac 181
|||
Sbjct: 315 tac 313
>gb|CA011241.1|CA011241 HT06L10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06L10
3-PRIME, mRNA sequence
Length = 492
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 440 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 381
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 380 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 321
Query: 179 tac 181
|||
Sbjct: 320 tac 318
>gb|CA014591.1|CA014591 HT11M11r HT Hordeum vulgare subsp. vulgare cDNA clone HT11M11
5-PRIME, mRNA sequence
Length = 533
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 442 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 383
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 382 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 323
Query: 179 tac 181
|||
Sbjct: 322 tac 320
>gb|CB875605.1|CB875605 HX08M24w HX Hordeum vulgare subsp. vulgare cDNA clone HX08M24
3-PRIME, mRNA sequence
Length = 595
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 442 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 383
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 382 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 323
Query: 179 tac 181
|||
Sbjct: 322 tac 320
>gb|CB878688.1|CB878688 HP09H14T HP Hordeum vulgare subsp. vulgare cDNA clone HP09H14
5-PRIME, mRNA sequence
Length = 437
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 169 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 228
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 229 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 288
Query: 179 tac 181
|||
Sbjct: 289 tac 291
>gb|CB880044.1|CB880044 HM05F03w HM Hordeum vulgare subsp. vulgare cDNA clone HM05F03
3-PRIME, mRNA sequence
Length = 604
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 454 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 395
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 394 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 335
Query: 179 tac 181
|||
Sbjct: 334 tac 332
>gb|CB882795.1|CB882795 HL02N21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02N21
3-PRIME, mRNA sequence
Length = 593
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 466 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 525
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 526 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 585
Query: 179 tac 181
|||
Sbjct: 586 tac 588
>gb|CK125339.1|CK125339 BES1824107l18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L187 5-PRIME, mRNA sequence
Length = 783
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 319 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 378
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 379 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 438
Query: 179 tac 181
|||
Sbjct: 439 tac 441
>gb|CK125495.1|CK125495 BES1824108m09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M098 5-PRIME, mRNA sequence
Length = 622
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 205 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 264
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 265 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 324
Query: 179 tac 181
|||
Sbjct: 325 tac 327
>emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase
Length = 2667
Score = 69.9 bits (35), Expect = 8e-011
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | |||||||||||| |||||| ||| |||| || || ||
Sbjct: 2233 gagaagtacacctggaagctctactcagagaggctgatgaccctgaccggtgtgtatggg 2292
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
||||||||||||||| || || |||||||| ||||| | || ||||| |||||||||
Sbjct: 2293 ttctggaagtacgtgagcaacctggagaggcgcgagactcgccgttacctggagatgttc 2352
Query: 179 tac 181
|||
Sbjct: 2353 tac 2355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,729
Number of Sequences: 312970
Number of extensions: 41729
Number of successful extensions: 10907
Number of sequences better than 0.5: 150
Number of HSP's better than 0.5 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10711
Number of HSP's gapped (non-prelim): 161
length of query: 547
length of database: 175,134,539
effective HSP length: 19
effective length of query: 528
effective length of database: 169,188,109
effective search space: 89331321552
effective search space used: 89331321552
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)