BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3089980.2.1
         (540 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV926645.1|AV926645  AV926645 K. Sato unpublished cDNA li...    38   0.29 
gb|AV931547.1|AV931547  AV931547 K. Sato unpublished cDNA li...    38   0.29 

>gb|AV926645.1|AV926645 AV926645 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd23d11 5', mRNA sequence
          Length = 651

 Score = 38.2 bits (19), Expect = 0.29
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 206 cgccgccggcctcggcgtc 224
           |||||||||||||||||||
Sbjct: 10  cgccgccggcctcggcgtc 28



>gb|AV931547.1|AV931547 AV931547 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd23d11 3', mRNA sequence
          Length = 663

 Score = 38.2 bits (19), Expect = 0.29
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 206 cgccgccggcctcggcgtc 224
           |||||||||||||||||||
Sbjct: 663 cgccgccggcctcggcgtc 645



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,989
Number of Sequences: 312970
Number of extensions: 96989
Number of successful extensions: 30205
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30202
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 175,134,539
effective HSP length: 19
effective length of query: 521
effective length of database: 169,188,109
effective search space: 88147004789
effective search space used: 88147004789
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)