BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071761.2.1
(638 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachi... 365 1e-099
gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA li... 357 3e-097
gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedl... 353 4e-096
gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 ... 301 1e-080
gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hyd... 297 2e-079
gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, dro... 216 7e-055
gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachi... 137 5e-031
gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-a... 103 7e-021
gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke devel... 101 3e-020
gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgar... 101 3e-020
gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke devel... 90 1e-016
gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. v... 78 4e-013
gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedl... 64 6e-009
gb|BQ465081.1|BQ465081 HU02J12r HU Hordeum vulgare subsp. v... 64 6e-009
gb|AL510866.1|AL510866 AL510866 Hordeum vulgare Barke devel... 46 0.001
gb|BF064865.2|BF064865 HV_CEb0021D12f Hordeum vulgare seedl... 46 0.001
gb|CA005904.1|CA005904 HU08C03u HU Hordeum vulgare subsp. v... 46 0.001
gb|CA016130.1|CA016130 HV10D20u HV Hordeum vulgare subsp. v... 46 0.001
gb|CV059902.1|CV059902 BNEL52b8 Barley EST endosperm librar... 46 0.001
gb|CV061694.1|CV061694 BNEL70h10 Barley EST endosperm libra... 46 0.001
gb|CA001981.1|CA001981 HS06C18r HS Hordeum vulgare subsp. v... 44 0.006
gb|CA002243.1|CA002243 HS06O21r HS Hordeum vulgare subsp. v... 44 0.006
gb|AV836948.1|AV836948 AV836948 K. Sato unpublished cDNA li... 40 0.086
gb|BF267763.2|BF267763 HV_CEa0018N05f Hordeum vulgare seedl... 40 0.086
gb|CA000780.1|CA000780 HS06P19u HS Hordeum vulgare subsp. v... 40 0.086
gb|CA021837.1|CA021837 HZ41E10r HZ Hordeum vulgare subsp. v... 40 0.086
>gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021P10f, mRNA sequence
Length = 657
Score = 365 bits (184), Expect = 1e-099
Identities = 290/325 (89%), Gaps = 1/325 (0%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 632 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 573
Query: 61 ggagctggaggcgctcc-tcatcacgcacccggagatcaaggacgccgccgtcgtatcaa 119
||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 572 agagctngaggccntcnntcatcacccacccggagatcaaggacgccgccgtcgtatcgc 513
Query: 120 tgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctc 179
|||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| |||
Sbjct: 512 tgaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctg 453
Query: 180 aagtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaaga 239
|| ||||||||||||| ||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct: 452 aaatcaccgaggatgacatcaaaaaattcgtcgcgaaggaggttgttttctacaagagga 393
Query: 240 tccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgagga 299
|||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 392 tccacaaggtcttcttcaccgactcaatccccaagaacccttcaggcaagatcctgagga 333
Query: 300 aggacttgagagccaggctcgccgc 324
|||||||||||||||||||||||||
Sbjct: 332 aggacttgagagccaggctcgccgc 308
>gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8m01, mRNA sequence
Length = 599
Score = 357 bits (180), Expect = 3e-097
Identities = 291/326 (89%), Gaps = 2/326 (0%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 72 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 131
Query: 61 -ggagctggaggcgctcctcatcacgcacccggag-atcaaggacgccgccgtcgtatca 118
| |||| ||||| ||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 132 agnagctcgaggccctcctcatcacccacccggngnatcaaggacgccgccgtcgtatcg 191
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
|||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| |||
Sbjct: 192 ctgaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctct 251
Query: 179 caagtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaag 238
|| ||||||||||||| ||||| |||||||||| |||||||| ||||||||||||| |
Sbjct: 252 gaaatcaccgaggatgacatcaaaaaattcgtcgcgaaggaggttgttttctacaagagg 311
Query: 239 atccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgagg 298
||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||
Sbjct: 312 atccacaaggtcttcttcaccgactcaatccccaagaacccttcaggcaagatcctgagg 371
Query: 299 aaggacttgagagccaggctcgccgc 324
||||||||||||||||||||||||||
Sbjct: 372 aaggacttgagagccaggctcgccgc 397
>gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001H21f, mRNA sequence
Length = 922
Score = 353 bits (178), Expect = 4e-096
Identities = 286/322 (88%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 153 cttcattgttgacaggctcaaggagatcatgaagtacaagggcttccaggtggcgccggc 212
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 213 agagctcgaggccctcctcatcacccacccggagatcaaggacgccgccgtcgtatcgct 272
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| ||| |
Sbjct: 273 gaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctga 332
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| ||||||||||||| ||||| |||||||||| |||||||| | ||||||||||| |||
Sbjct: 333 aatcaccgaggatgacatcaaaaaattcgtcgcgaaggaggttggtttctacaagaggat 392
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
||||||||||||||||||||| || || ||||||||||| || ||| |||||||||||||
Sbjct: 393 ccacaaggtcttcttcaccgactcaatgcccaagaacccttcaggcgagatcctgaggaa 452
Query: 301 ggacttgagagccaggctcgcc 322
||||||||||||||||||||||
Sbjct: 453 ggacttgagagccaggctcgcc 474
>gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094P16f, mRNA sequence
Length = 685
Score = 301 bits (152), Expect = 1e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 393 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 452
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 453 agagctcgaggccctcctcatcacccacccggagatcaaggacgccgccgtcgtatcgct 512
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| ||| |
Sbjct: 513 gaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctga 572
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| ||||||||||||| ||||| |||||||||| || ||||| ||||||||||||| |||
Sbjct: 573 aatcaccgaggatgacatcaaaaaattcgtcgcgaaagaggttgttttctacaagaggat 632
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaa 288
|||||||||||| |||||||| || |||||||||||||| || |||||
Sbjct: 633 ccacaaggtctttttcaccgactcaatccccaagaacccttcaggcaa 680
>gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_M23 5', mRNA sequence
Length = 590
Score = 297 bits (150), Expect = 2e-079
Identities = 243/274 (88%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 317 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 376
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 377 agagctcgaggccctcctcatcacccacccggagatcaaggacgccgccgtcgtatcgct 436
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| ||| |
Sbjct: 437 gaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctga 496
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||| |||
Sbjct: 497 aatcaccgaggatgacatcaaaaaattcgtcgcgaaggagggtgttttctacaagaggat 556
Query: 241 ccacaaggtcttcttcaccgaatccatccccaag 274
||||||||||||||||||||| || |||||||||
Sbjct: 557 ccacaaggtcttcttcaccgactcaatccccaag 590
>gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_H07 5', mRNA sequence
Length = 552
Score = 216 bits (109), Expect = 7e-055
Identities = 178/201 (88%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 347 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 406
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 407 agagctcgaggccctcctcatcacccacccggagatcaaggacgccgccgtcgtatcgct 466
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| || || |||||||| ||| ||||| |||||||| | |||||| |||||| ||| |
Sbjct: 467 gaaggacgatcttgctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctga 526
Query: 181 agtcaccgaggatgagatcaa 201
| ||||||||||||| |||||
Sbjct: 527 aatcaccgaggatgacatcaa 547
>gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006D04f, mRNA sequence
Length = 654
Score = 137 bits (69), Expect = 5e-031
Identities = 104/116 (89%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 486 cttcattgttgacaggctcaaggagatcatcaagtacaagggcttccaggtggcgccggc 545
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtat 116
|||| ||||| ||||||||||| |||||||||||| | ||| ||| ||||||||
Sbjct: 546 aaagctcgaggccctcctcatcacccacccggagatccaagacnccggcgtcgtat 601
>gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015E07f, mRNA sequence
Length = 875
Score = 103 bits (52), Expect = 7e-021
Identities = 104/119 (87%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt-gccgccgg 59
|||||| || ||||||||||||||||||||||||||||||||| | || || | ||||||
Sbjct: 642 cttcattgttgacaggctcaaggagatcatcaagtacaagggccttcangtgggcgccgg 701
Query: 60 cggagctggaggcgctcctcatcacgca-cccggagatcaaggacgccgccgtcgtatc 117
| ||||| ||||| | ||||| || || ||||||||||||||||||||||||||||||
Sbjct: 702 cagagctcgaggcccctctcattacccaccccggagatcaaggacgccgccgtcgtatc 760
>gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21u 3',
mRNA sequence
Length = 508
Score = 101 bits (51), Expect = 3e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 339 cttcatcgtcgaccgcgtcaaggagctcatcaagttcaagggcttccaggtgccgccggc 398
Query: 61 ggagctggaggcgctcctcatcacgca 87
||||||||||| || |||||| ||||
Sbjct: 399 cgagctggaggctctgctcatcgcgca 425
>gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K1510 5-PRIME, mRNA sequence
Length = 630
Score = 101 bits (51), Expect = 3e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 288 cttcatcgtcgaccgcgtcaaggagctcatcaagttcaagggcttccaggtgccgccggc 347
Query: 61 ggagctggaggcgctcctcatcacgca 87
||||||||||| || |||||| ||||
Sbjct: 348 cgagctggaggctctgctcatcgcgca 374
>gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21T 5',
mRNA sequence
Length = 700
Score = 89.7 bits (45), Expect = 1e-016
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||| ||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 622 cttnatcgtcgaccgcgtcaaggagctcatcaagttcaagggcttccaggtgccgccggc 563
Query: 61 ggagctggaggc 72
|||||||||||
Sbjct: 562 cgagctggaggc 551
>gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L15
3-PRIME, mRNA sequence
Length = 490
Score = 77.8 bits (39), Expect = 4e-013
Identities = 201/255 (78%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || || ||
Sbjct: 60 cttcatcgtcgacaggctcaaagagataatcaaatacaagggattccaagtacctcctgc 119
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||| || || || || ||||| || ||| | || ||||| || || || || ||||| ||
Sbjct: 120 ggaactcgaagcccttctcattacacacgctgaaatcaaagatgctgctgttgtatcgat 179
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
| | ||||| ||| |||||||| | || || || ||||| ||||||| ||||| ||| |
Sbjct: 180 gcaagatgaacttactggtgaagtaccagttgcattcattgtgcggattgaaggctctga 239
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
||| |||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 240 gatcagcgagagcgagatcaagcagtttgttgcaaaagaggttgttttctacaaaaggat 299
Query: 241 ccacaaggtcttctt 255
|||||| || |||||
Sbjct: 300 ccacaaagttttctt 314
>gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015K22f, mRNA sequence
Length = 817
Score = 63.9 bits (32), Expect = 6e-009
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttcca 48
||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 524 cttcatcgtcgacaggctcaaagagataatcaaatacaagggattcca 571
>gb|BQ465081.1|BQ465081 HU02J12r HU Hordeum vulgare subsp. vulgare cDNA clone HU02J12
5-PRIME, mRNA sequence
Length = 633
Score = 63.9 bits (32), Expect = 6e-009
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttcca 48
||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 580 cttcatcgtcgacaggctcaaagagataatcaaatacaagggattcca 627
>gb|AL510866.1|AL510866 AL510866 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06D22u 3',
mRNA sequence
Length = 513
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 334 catccccaagaatgcgtctggcaagatactgaggaagga 296
>gb|BF064865.2|BF064865 HV_CEb0021D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021D12f, mRNA sequence
Length = 806
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 557 catccccaagaatgcgtctggcaagatactgaggaagga 595
>gb|CA005904.1|CA005904 HU08C03u HU Hordeum vulgare subsp. vulgare cDNA clone HU08C03
3-PRIME, mRNA sequence
Length = 484
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 314 catccccaagaatgcgtctggcaagatactgaggaagga 276
>gb|CA016130.1|CA016130 HV10D20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10D20
3-PRIME, mRNA sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 325 catccccaagaatgcgtctggcaagatactgaggaagga 287
>gb|CV059902.1|CV059902 BNEL52b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL52b8 5' similar to Putative
AMP-binding protein, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 192 catccccaagaatgcgtctggcaagatactgaggaagga 230
>gb|CV061694.1|CV061694 BNEL70h10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL70h10 5' similar to Putative
AMP-binding protein, mRNA sequence
Length = 568
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 265 catccccaagaacccgtcgggcaagatcctgaggaagga 303
|||||||||||| |||| |||||||| |||||||||||
Sbjct: 192 catccccaagaatgcgtctggcaagatactgaggaagga 230
>gb|CA001981.1|CA001981 HS06C18r HS Hordeum vulgare subsp. vulgare cDNA clone HS06C18
5-PRIME, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 gccgccggcggagctggaggcg 73
||||||||||||||||||||||
Sbjct: 44 gccgccggcggagctggaggcg 65
>gb|CA002243.1|CA002243 HS06O21r HS Hordeum vulgare subsp. vulgare cDNA clone HS06O21
5-PRIME, mRNA sequence
Length = 416
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 gccgccggcggagctggaggcg 73
||||||||||||||||||||||
Sbjct: 44 gccgccggcggagctggaggcg 65
>gb|AV836948.1|AV836948 AV836948 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd16d24, mRNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 gccgccggcggagctggaggcgct 75
|||||||||||||| |||||||||
Sbjct: 197 gccgccggcggagcaggaggcgct 220
>gb|BF267763.2|BF267763 HV_CEa0018N05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018N05f, mRNA sequence
Length = 912
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 52 gccgccggcggagctggaggcgct 75
|||||||||||||| |||||||||
Sbjct: 375 gccgccggcggagcaggaggcgct 352
>gb|CA000780.1|CA000780 HS06P19u HS Hordeum vulgare subsp. vulgare cDNA clone HS06P19
3-PRIME, mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 gccgccggcggagctggaggcgct 75
|||||||||||||| |||||||||
Sbjct: 304 gccgccggcggagcaggaggcgct 327
>gb|CA021837.1|CA021837 HZ41E10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41E10
5-PRIME, mRNA sequence
Length = 247
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 52 gccgccggcggagctggaggcgct 75
|||||||||||||| |||||||||
Sbjct: 163 gccgccggcggagcaggaggcgct 140
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,314
Number of Sequences: 312970
Number of extensions: 99314
Number of successful extensions: 27489
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27453
Number of HSP's gapped (non-prelim): 31
length of query: 638
length of database: 175,134,539
effective HSP length: 19
effective length of query: 619
effective length of database: 169,188,109
effective search space: 104727439471
effective search space used: 104727439471
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)