BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA li... 400 e-110
gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed D... 398 e-109
gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. v... 392 e-107
gb|CA022248.1|CA022248 HZ42J07r HZ Hordeum vulgare subsp. v... 323 1e-086
gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgar... 315 3e-084
gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate sy... 305 3e-081
gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Le... 297 7e-079
gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA li... 297 7e-079
gb|AV914348.1|AV914348 AV914348 K. Sato unpublished cDNA li... 252 4e-065
gb|AV917170.1|AV917170 AV917170 K. Sato unpublished cDNA li... 232 3e-059
gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedl... 230 1e-058
gb|BJ463533.1|BJ463533 BJ463533 K. Sato unpublished cDNA li... 224 8e-057
gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots... 186 2e-045
gb|CA011510.1|CA011510 HT05E02u HT Hordeum vulgare subsp. v... 184 7e-045
gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. v... 174 7e-042
gb|BU968420.1|BU968420 HB07H08r BC Hordeum vulgare subsp. v... 159 4e-037
gb|BU975604.1|BU975604 HB31K24r BC Hordeum vulgare subsp. v... 135 6e-030
gb|BM444184.1|BM444184 EBem09_SQ004_G12_R embryo, 1 Day ger... 109 3e-022
gb|BE193243.1|BE193243 HVSMEh0080E17f Hordeum vulgare 5-45 ... 94 2e-017
gb|CB874869.1|CB874869 HX06J01w HX Hordeum vulgare subsp. v... 94 2e-017
gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA li... 56 4e-006
gb|BU985379.1|BU985379 HF06P13r HF Hordeum vulgare subsp. v... 56 4e-006
gb|BU985680.1|BU985680 HF08E20r HF Hordeum vulgare subsp. v... 56 4e-006
gb|CA016632.1|CA016632 HV08B18u HV Hordeum vulgare subsp. v... 56 4e-006
gb|BG416908.2|BG416908 HVSMEk0015C11f Hordeum vulgare testa... 52 7e-005
gb|BF619008.2|BF619008 HVSMEc0008G05f Hordeum vulgare seedl... 48 0.001
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 42 0.064
>gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g04 3', mRNA sequence
Length = 688
Score = 400 bits (202), Expect = e-110
Identities = 385/446 (86%)
Strand = Plus / Plus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| || ||||||| ||||
Sbjct: 238 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccgctttcaccgacaaga 297
Query: 839 accacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagat 898
| ||| | ||| |||||||||| ||||| |||| ||||| |||||||||||||| ||
Sbjct: 298 atcacgacgtttcgcaactctattccccaacgaacagacaggtaccttagagcctgggag 357
Query: 899 cgcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatga 958
|| |||||||| ||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct: 358 cgtgatgcatgaattggaattacagatagcctggtagcactgtggttataaagagcatga 417
Query: 959 caacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgattt 1018
|| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 418 cagcgtagtgactggattctcatcaacttttgcagctccttcaaaggaggtaaataattt 477
Query: 1019 ggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatg 1078
||||| ||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||
Sbjct: 478 ggattgaccactctaaacgcaaggcaagatgttgaagagtgttctgcatcttcaaagata 537
Query: 1079 acttgcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtac 1138
||||| ||||||||||| |||||||||||||||| || ||||||||||| |||| |||
Sbjct: 538 acttgtttttcagttcttccccttctttctactatcgaggaagcccacttcactagatac 597
Query: 1139 ttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatggtccaac 1198
|| ||||||||||||||||||||||| ||||| ||||| || |||| ||| |||| ||
Sbjct: 598 tttcttaaaccttctcctccccaacggtactcgatatgagactggtaattacggtctaat 657
Query: 1199 gcaaatgtaacacgggaattgcttgg 1224
|||||||| ||||||||| |||||||
Sbjct: 658 gcaaatgtcacacgggaagtgcttgg 683
>gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01cb12, mRNA sequence
Length = 898
Score = 398 bits (201), Expect = e-109
Identities = 432/509 (84%)
Strand = Plus / Plus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| || ||||||| ||||
Sbjct: 309 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccgctttcaccgacaaga 368
Query: 839 accacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagat 898
| ||| | ||| |||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct: 369 atcacgacgtttcgcaactctatgccccaacgaacagacaggtaccttagagcctgggag 428
Query: 899 cgcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatga 958
|| |||||||| ||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct: 429 cgtgatgcatgaattggaattacagatagcctggtagcactgtggttataaagagcatga 488
Query: 959 caacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgattt 1018
|| || ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 489 cagcgtagtgactggattctcatcaacttctgcagctccttcaaaggaggtaaataattt 548
Query: 1019 ggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatg 1078
||||| ||||||||||| ||||| ||| ||||||| |||||||| | |||||||||||
Sbjct: 549 ggattgaccactctaaacgcaaggcaagatgttgaggagtgttctgcgtcttcaaagata 608
Query: 1079 acttgcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtac 1138
||||| ||||||||||| |||||||||||||||| || ||||||||||| |||| |||
Sbjct: 609 acttgtttttcagttcttccccttctttctactatcgaggaagcccacttcactagatac 668
Query: 1139 ttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatggtccaac 1198
|| ||||||||||||||||||||||| ||||| ||||| || |||| ||| |||| ||
Sbjct: 669 tttcttaaaccttctcctccccaacggtactcgatatgggactggtaattacggtctaat 728
Query: 1199 gcaaatgtaacacgggaattgcttggcacatcactagactgtaatggataatatatatcg 1258
|||||||| ||||||||| ||||||| ||||| || | | || || ||| ||| |||
Sbjct: 729 gcaaatgtcacacgggaagtgcttggtgaatcaccagcccgcaaagggtaaaataaatca 788
Query: 1259 ctcccactattgcatataaaggcatcaaa 1287
||||||||||||||||| || ||||||||
Sbjct: 789 ctcccactattgcatatgaaagcatcaaa 817
>gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. vulgare cDNA clone HF05E11
5-PRIME, mRNA sequence
Length = 584
Score = 392 bits (198), Expect = e-107
Identities = 384/446 (86%)
Strand = Plus / Minus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| ||| ||||||| || |
Sbjct: 491 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccactttcaccgaccaga 432
Query: 839 accacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagat 898
| ||| | ||| |||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct: 431 atcacgacgtttcgcaactctatgccccaacgaacagacaggtaccttagagcctgggag 372
Query: 899 cgcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatga 958
|| |||||||| ||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct: 371 cgtgatgcatgaattggaattacagatagcctggtagcactgtggttataaagagcatga 312
Query: 959 caacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgattt 1018
|| || ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 311 cagcgtagtgactggattctcatcaacttctgcagctccttcaaaggaggtaaataattt 252
Query: 1019 ggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatg 1078
||||| ||||||||||| ||||| ||| ||||||| |||||||| | ||||||||||||
Sbjct: 251 ggattgaccactctaaacgcaaggcaagatgttgaggagtgttctgcatcttcaaagata 192
Query: 1079 acttgcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtac 1138
||||| ||||||||||| |||||||||||||||| || ||||||||||| |||| |||
Sbjct: 191 acttgtttttcagttcttccccttctttctactatcgaggaagcccacttcactagatac 132
Query: 1139 ttccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatggtccaac 1198
|| ||||||||||||||||||||||| ||||| ||||| || |||| ||| |||| ||
Sbjct: 131 tttcttaaaccttctcctccccaacggtactcgatatgggactggtaattacggtctaat 72
Query: 1199 gcaaatgtaacacgggaattgcttgg 1224
|||||||| ||||||||| |||||||
Sbjct: 71 gcaaatgtcacacgggaagtgcttgg 46
>gb|CA022248.1|CA022248 HZ42J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J07
5-PRIME, mRNA sequence
Length = 594
Score = 323 bits (163), Expect = 1e-086
Identities = 307/355 (86%)
Strand = Plus / Minus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| ||| ||||||| || |
Sbjct: 373 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccactttcaccgaccaga 314
Query: 839 accacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagat 898
| ||| | ||| |||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct: 313 atcacgacgtttcgcaactctatgccccaacgaacagacaggtaccttagagcctgggag 254
Query: 899 cgcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatga 958
|| |||||||| ||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct: 253 cgtgatgcatgaattggaattacagatagcctggtagcactgtggttataaagagcatga 194
Query: 959 caacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgattt 1018
|| || ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 193 cagcgtagtgactggattctcatcaacttctgcagctccttcaaaggaggtaaataattt 134
Query: 1019 ggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatg 1078
||||| ||||||||||| ||||| ||| ||||||| |||||||| | ||||||||||||
Sbjct: 133 ggattgaccactctaaacgcaaggcaagatgttgaggagtgttctgcatcttcaaagata 74
Query: 1079 acttgcttttcagttctcccccttctttctactactgaagaagcccacttaacta 1133
||||| ||||||||||| |||||||||||||||| || ||||||||||| ||||
Sbjct: 73 acttgtttttcagttcttccccttctttctactatcgaggaagcccacttcacta 19
>gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A025 5-PRIME, mRNA sequence
Length = 759
Score = 315 bits (159), Expect = 3e-084
Identities = 278/315 (88%), Gaps = 2/315 (0%)
Strand = Plus / Minus
Query: 1514 aaagcaggatgtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttca 1573
|||||||| | |||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 506 aaagcagggtatcttgggctaagagttaatatcctcgacaagtaattcttgcaatgttca 447
Query: 1574 ggccaagaaaattggtgtatatttttcaatccattttctcgacatctagacacaaaactg 1633
||||||||||| ||||||||||||||| |||||||||| |||||| ||| || | ||
Sbjct: 446 ggccaagaaaaccggtgtatatttttcagcccattttctctacatcttgac-cagagttg 388
Query: 1634 cttttcagaaagcatcttatagagggcatctgcaattgcatgctgatcatggggatcaac 1693
||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 387 cttgtcagaaagaagcttatagagtgcatctgcaattgcatgctgatcgtggggatcaac 328
Query: 1694 aaggagaccattttccagaacctgataaatttcaacaggagccccattttttgttgcaat 1753
||||||||| || |||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 327 aaggagaccgttgtccaacacctggtgaatttctacaggagctccattttttgttgcaat 268
Query: 1754 aacaggcaaaccgtgcatggcagcctctatcaaggtgacaccaaattgttcaaaataa-c 1812
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct: 267 tacaggtaaaccatgcatggcagcctctatcaaggtgacaccgaattgttcaaagtaagc 208
Query: 1813 aacatttacaaaagc 1827
||||||||||||||
Sbjct: 207 tacatttacaaaagc 193
Score = 46.1 bits (23), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1346 gaagtagacagcacaaaacctgtagaacctgaca 1379
||||| |||| |||||||||||| ||||||||||
Sbjct: 678 gaagtcgacancacaaaacctgttgaacctgaca 645
>gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate synthase mRNA, partial cds
Length = 2085
Score = 305 bits (154), Expect = 3e-081
Identities = 418/506 (82%)
Strand = Plus / Minus
Query: 675 caatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtat 734
|||||||||| ||||| || || ||||| |||||||| || ||||| || || || || |
Sbjct: 1750 caatgatattggagctgtccagtgcaacgacatcctgcaaggggtatctcctcactgtgt 1691
Query: 735 ggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctc 794
|||| || || || | | ||||||| ||||||| | ||| | ||| |||||||||| |
Sbjct: 1690 ggattctgtttgcggcaatgttgaagtcacccttcaggattatggtcctgtggagacccc 1631
Query: 795 caaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggca 854
| | |||||| || ||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1630 ctagcagttcttcataatcggaatcaccactttcaccaacaatgaccacaatatttggca 1571
Query: 855 actctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattg 914
||||||| |||||||| | | |||| ||||||| |||||||| || || ||||| || |
Sbjct: 1570 actctatcccccagcgtacaaacaagtaccttattgcctgagaacgtgacgcatgaatag 1511
Query: 915 gaattacagatagcctggtggcgccatggttatacagagcatgacaacgcagtgactgga 974
|| ||||||| || ||||| |||| ||||||||||| |||| |||||| || |||||||
Sbjct: 1510 gagttacagacagtctggtagcgctgtggttatacagcgcattacaacgaagcgactgga 1451
Query: 975 ttctcatcaacttttgcagctccttcaaaggaggcaaatgatttggattaaccactctaa 1034
|||||||||| || || |||||||| ||||||| |||||||||||| |||||| |||
Sbjct: 1450 ttctcatcaatttcctcaactccttcaggggaggcagatgatttggattgaccactttaa 1391
Query: 1035 atgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgcttttcagttc 1094
||||||||||||| || ||||||||||| |||||||| || || | ||| ||||| |||
Sbjct: 1390 atgcaagacaataggtagaagagtgttctgaatcttcgaaaatcatctgcctttcaattc 1331
Query: 1095 tcccccttctttctactactgaagaagcccacttaactaagtacttccttaaaccttctc 1154
| ||| |||||||||| ||||||| |||||| || || | ||||| |||| ||||||||
Sbjct: 1330 ttccctttctttctaccactgaagtagcccatttcacaagatactttcttagaccttctc 1271
Query: 1155 ctccccaacgatactcaatatgtgat 1180
||||||||||||||||||||||||||
Sbjct: 1270 ctccccaacgatactcaatatgtgat 1245
Score = 226 bits (114), Expect = 2e-057
Identities = 232/270 (85%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 880 atatccttgacaggtgattcttgcaatgttcaggccaggaaaattggtgaatatttttta 821
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||||||||| ||||| ||| |||| ||||| || ||||| | ||||| || |||
Sbjct: 820 gtccattttctctgcatcttgac-caaagttgcttctcggaaagaagtttatacagtgca 762
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccattttccagaacctgataa 1721
|||||||| |||| ||||||||| ||||| |||||||||||||| | || |||||||
Sbjct: 761 tctgcaatggcattctgatcatgtggatcgacaaggagaccattgttgagcacctgatgg 702
Query: 1722 atttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcctct 1781
|||||||||||||| ||||||||||| ||||||||||||||||| | ||| || ||||||
Sbjct: 701 atttcaacaggagctccattttttgtagcaataacaggcaaaccattcatagcggcctct 642
Query: 1782 atcaaggtgacaccaaattgttcaaaataa 1811
|||||||| || ||||||||||| ||||||
Sbjct: 641 atcaaggtaacgccaaattgttcgaaataa 612
>gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 804
Score = 297 bits (150), Expect = 7e-079
Identities = 336/398 (84%)
Strand = Plus / Minus
Query: 783 tgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgacca 842
|||||||||| || | |||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct: 638 tgtggagaccccctagcagttcttcataatcggaatcaccactttcaccaacaatgacca 579
Query: 843 cagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcg 902
|| ||||||||||||||| |||||||| | | |||| ||||||| |||||||| || |
Sbjct: 578 caatatttggcaactctatcccccagcgtacaaacaagtaccttattgcctgagaacgtg 519
Query: 903 atgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaac 962
| ||||| || ||| ||||||| || ||||| |||| ||||||||||| |||| |||||
Sbjct: 518 acgcatgaataggagttacagacagtctggtagcgctgtggttatacagcgcattacaac 459
Query: 963 gcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggat 1022
| || ||||||||||||||||| || || |||||||| ||||||| |||||||||||
Sbjct: 458 gaagcgactggattctcatcaatttcctcaactccttcaggggaggcagatgatttggat 399
Query: 1023 taaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgactt 1082
| |||||| |||||||||||||||| || ||||||||||| |||||||| || || | |
Sbjct: 398 tgaccactttaaatgcaagacaataggtagaagagtgttctgaatcttcgaaaatcatct 339
Query: 1083 gcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcc 1142
|| ||||| |||| ||| |||||||||| ||||||| |||||| || || | ||||| |
Sbjct: 338 gcctttcaattcttccctttctttctaccactgaagtagcccatttcacaagatactttc 279
Query: 1143 ttaaaccttctcctccccaacgatactcaatatgtgat 1180
||| ||||||||||||||||||||||||||||||||||
Sbjct: 278 ttagaccttctcctccccaacgatactcaatatgtgat 241
>gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26l03 3', mRNA sequence
Length = 653
Score = 297 bits (150), Expect = 7e-079
Identities = 336/398 (84%)
Strand = Plus / Plus
Query: 783 tgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgacca 842
|||||||||| || | |||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct: 224 tgtggagaccccctagcagttcttcataatcggaatcaccactttcaccaacaatgacca 283
Query: 843 cagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcg 902
|| ||||||||||||||| |||||||| | | |||| ||||||| |||||||| || |
Sbjct: 284 caatatttggcaactctatcccccagcgtacaaacaagtaccttattgcctgagaacgtg 343
Query: 903 atgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaac 962
| ||||| || ||| ||||||| || ||||| |||| ||||||||||| |||| |||||
Sbjct: 344 acgcatgaataggagttacagacagtctggtagcgctgtggttatacagcgcattacaac 403
Query: 963 gcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggat 1022
| || ||||||||||||||||| || || |||||||| ||||||| |||||||||||
Sbjct: 404 gaagcgactggattctcatcaatttcctcaactccttcaggggaggcagatgatttggat 463
Query: 1023 taaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgactt 1082
| |||||| |||||||||||||||| || ||||||||||| |||||||| || || | |
Sbjct: 464 tgaccactttaaatgcaagacaataggtagaagagtgttctgaatcttcgaaaatcatct 523
Query: 1083 gcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcc 1142
|| ||||| |||| ||| |||||||||| ||||||| |||||| || || | ||||| |
Sbjct: 524 gcctttcaattcttccctttctttctaccactgaagtagcccatttcacaagatactttc 583
Query: 1143 ttaaaccttctcctccccaacgatactcaatatgtgat 1180
||| ||||||||||||||||||||||||||||||||||
Sbjct: 584 ttagaccttctcctccccaacgatactcaatatgtgat 621
>gb|AV914348.1|AV914348 AV914348 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5m14 5', mRNA sequence
Length = 475
Score = 252 bits (127), Expect = 4e-065
Identities = 313/375 (83%)
Strand = Plus / Minus
Query: 783 tgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgacca 842
|||||||||| || | |||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct: 382 tgtggagaccccctagcagttcttcataatcggaatcaccactttcaccaacaatgacca 323
Query: 843 cagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcg 902
|| ||||||||||||||| |||||||| | | |||| ||||||| |||||||| || |
Sbjct: 322 caatatttggcaactctatcccccagcgtacaaacaagtaccttattgcctgagaacgtg 263
Query: 903 atgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaac 962
| ||||| || ||| ||||||| || ||||| |||| ||||||||||| |||| |||||
Sbjct: 262 acgcatgaataggagttacagacagtctggtagcgctgtggttatacagcgcattacaac 203
Query: 963 gcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggat 1022
| || ||||||||||||||||| || || |||||||| ||||||| |||||||||||
Sbjct: 202 gaagcgactggattctcatcaatttcctcaactccttcaggggaggcagatgatttggat 143
Query: 1023 taaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgactt 1082
| |||||| |||||||||||||||| || ||||||||||| |||||||| || || | |
Sbjct: 142 tgaccactttaaatgcaagacaataggtagaagagtgttctgaatcttcgaaaatcatct 83
Query: 1083 gcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcc 1142
|| ||||| |||| ||| |||||||||| ||||||| |||||| || || | ||||| |
Sbjct: 82 gcctttcaattcttccctttctttctaccactgaagtagcccatttcacaagatactttc 23
Query: 1143 ttaaaccttctcctc 1157
||| |||||||||||
Sbjct: 22 ttagaccttctcctc 8
>gb|AV917170.1|AV917170 AV917170 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c04 5', mRNA sequence
Length = 630
Score = 232 bits (117), Expect = 3e-059
Identities = 327/397 (82%)
Strand = Plus / Minus
Query: 675 caatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtat 734
|||||||||| ||||| || || ||||| |||||||| || ||||| || || || || |
Sbjct: 464 caatgatattggagctgtccagtgcaacgacatcctgcaaggggtatctcctcactgtgt 405
Query: 735 ggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctc 794
|||| || || || | | ||||||| ||||||| | ||| | ||| |||||||||| |
Sbjct: 404 ggattctgtttgcggcaatgttgaagtcacccttcaggattatggtcctgtggagacccc 345
Query: 795 caaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggca 854
| | |||||| || ||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 344 ctagcagttcttcataatcggaatcaccactttcaccaacaatgaccacaatatttggca 285
Query: 855 actctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattg 914
||||||| |||||||| | | |||| ||||||| |||||||| || || ||||| || |
Sbjct: 284 actctatcccccagcgtacaaacaagtaccttattgcctgagaacgtgacgcatgaatag 225
Query: 915 gaattacagatagcctggtggcgccatggttatacagagcatgacaacgcagtgactgga 974
|| ||||||| || ||||| |||| ||||||||||| |||| |||||| || |||||||
Sbjct: 224 gagttacagacagtctggtagcgctgtggttatacagcgcattacaacgaagcgactgga 165
Query: 975 ttctcatcaacttttgcagctccttcaaaggaggcaaatgatttggattaaccactctaa 1034
|||||||||| || || |||||||| ||||||| |||||||||||| |||||| |||
Sbjct: 164 ttctcatcaatttcctcaactccttcaggggaggcagatgatttggattgaccactttaa 105
Query: 1035 atgcaagacaatatgttgaagagtgttccgaatcttc 1071
||||||||||||| || ||||||||||| ||||||||
Sbjct: 104 atgcaagacaataggtagaagagtgttctgaatcttc 68
>gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0016J09f, mRNA sequence
Length = 818
Score = 230 bits (116), Expect = 1e-058
Identities = 361/440 (82%), Gaps = 2/440 (0%)
Strand = Plus / Minus
Query: 941 tggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctccttc 1000
|||||||| |||||||| || || |||||||||||| |||||||||| ||||||||||||
Sbjct: 700 tggttataaagagcatgccagcgtagtgactggattttcatcaacttctgcagctccttc 641
Query: 1001 aaaggaggcaaatgatttggattaaccactctaaatgcaagacaatatgttgaagagtgt 1060
|||||||| |||| ||| ||||| ||||||||||| ||||| ||| ||||||| | ||||
Sbjct: 640 aaaggaggtaaataatt-ggattgaccactctaaacgcaaggcaagatgttgaggcgtgt 582
Query: 1061 tcc-gaatcttcaaagatgacttgcttttcagttctcccccttctttctactactgaaga 1119
| | | ||||||||||| ||||| ||||||||||| |||||||||||||||| || ||
Sbjct: 581 ttctgcgtcttcaaagataacttgtttttcagttcttccccttctttctactatcgagga 522
Query: 1120 agcccacttaactaagtacttccttaaaccttctcctccccaacgatactcaatatgtga 1179
||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 521 gtcccacttcactagatactttcttaaaccttctcctccccaacggtactcgatatggga 462
Query: 1180 tcggtagttatggtccaacgcaaatgtaacacgggaattgcttggcacatcactagactg 1239
|||| ||| |||| || |||||||| ||||||||| ||||||| ||||| || | |
Sbjct: 461 ctggtaattacggtctaatgcaaatgtcacacgggaagtgcttggtgaatcaccagcccg 402
Query: 1240 taatggataatatatatcgctcccactattgcatataaaggcatcaaagtcagtcgggag 1299
|| || ||| ||| ||| ||||||||||||||||| || |||||||| || || ||
Sbjct: 401 caaagggtaaaataaatcactcccactattgcatatgaaagcatcaaaatctgtaggagc 342
Query: 1300 catgcctgtgcgtactattacagactgtagctctgctattgtcagtgaagtagacagcac 1359
|||||||| || || || || |||| ||||| ||||||| ||||| |||| |||
Sbjct: 341 catgcctgcagatattaatagggaatgtatctctgacattgtcaaggaagtcgacaacac 282
Query: 1360 aaaacctgtagaacctgaca 1379
||||||||| ||||||||||
Sbjct: 281 aaaacctgttgaacctgaca 262
Score = 117 bits (59), Expect = 1e-024
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 1514 aaagcaggatgtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttca 1573
|||||||| | |||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 124 aaagcagggtatcttgggctaagagttaatatcctcgacaagtaattcttgcaatgttca 65
Query: 1574 ggccaagaaaattggtgtatatttttcaatccattttctcgacatct 1620
||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 64 ggccaagaaaaccggtgtatatttttcagcccattttctctacatct 18
>gb|BJ463533.1|BJ463533 BJ463533 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g04 5', mRNA sequence
Length = 705
Score = 224 bits (113), Expect = 8e-057
Identities = 177/197 (89%), Gaps = 1/197 (0%)
Strand = Plus / Minus
Query: 1632 tgcttttcagaaagcatcttatagagggcatctgcaattgcatgctgatcatggggatca 1691
||||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 689 tgcttgtcagaaagaagcttatagagtgcatctgcaattgcatgctgatcgtggggatca 630
Query: 1692 acaaggagaccattttccagaacctgataaatttcaacaggagccccattttttgttgca 1751
||||||||||| || |||| ||||| | |||||| |||||||| |||||||||||||||
Sbjct: 629 acaaggagaccgttgtccaacacctggtgaatttctacaggagctccattttttgttgca 570
Query: 1752 ataacaggcaaaccgtgcatggcagcctctatcaaggtgacaccaaattgttcaaaataa 1811
|| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 569 attacaggtaaaccatgcatggcagcctctatcaaggtgacaccgaattgttcaaagtaa 510
Query: 1812 -caacatttacaaaagc 1827
| ||||||||||||||
Sbjct: 509 gctacatttacaaaagc 493
>gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01G06T 5', mRNA sequence
Length = 683
Score = 186 bits (94), Expect = 2e-045
Identities = 232/277 (83%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 905 gcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgc 964
||||| || ||| ||||||| || ||||| |||| ||||||||||| |||| ||||||
Sbjct: 675 gcatgaataggagttacagacagtctggtagcgctgtggttatacagcgcattacaacga 616
Query: 965 agtgac-tggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggatt 1023
|| ||| |||||||||||||| || || |||||||| ||||||| ||||||||||||
Sbjct: 615 agcgacctggattctcatcaatttcctcaactccttcaggggaggcagatgatttggatt 556
Query: 1024 aaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttg 1083
|||||| |||||||||| ||||| || ||||||||||| |||||||| || || | ||
Sbjct: 555 gaccactttaaatgcaagncaataggtagaagagtgttctgaatcttcgaaaatcatctg 496
Query: 1084 cttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcct 1143
| ||||| |||| ||| |||||||||| ||||||| |||||| || || | ||||| ||
Sbjct: 495 cctttcaattcttccctttctttctaccactgaagtagcccatttcacaagatactttct 436
Query: 1144 taaaccttctcctccccaacgatactcaatatgtgat 1180
|| ||||||||||||||||||||||||||||||||||
Sbjct: 435 tagaccttctcctccccaacgatactcaatatgtgat 399
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttc 1572
|||||||||||| || |||||||||||||||
Sbjct: 34 atatccttgacaggtgattcttgcaatgttc 4
>gb|CA011510.1|CA011510 HT05E02u HT Hordeum vulgare subsp. vulgare cDNA clone HT05E02
3-PRIME, mRNA sequence
Length = 493
Score = 184 bits (93), Expect = 7e-045
Identities = 189/221 (85%)
Strand = Plus / Plus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| ||| ||||||| || |
Sbjct: 273 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccactttcaccgaccaga 332
Query: 839 accacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagat 898
| ||| | ||| |||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct: 333 atcacgacgtttcgcaactctatgccccaacgaacagacaggtaccttagagcctgggag 392
Query: 899 cgcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatga 958
|| |||||||| ||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct: 393 cgtgatgcatgaattggaattacagatagcctggtagcactgtggttataaagagcatga 452
Query: 959 caacgcagtgactggattctcatcaacttttgcagctcctt 999
|| || ||||||||||||||||||||||| |||||||||||
Sbjct: 453 cagcgtagtgactggattctcatcaacttctgcagctcctt 493
>gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09H08
5-PRIME, mRNA sequence
Length = 642
Score = 174 bits (88), Expect = 7e-042
Identities = 158/180 (87%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 1514 aaagcaggatgtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttca 1573
|||||||| | |||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 189 aaagcagggtatcttgggctaagagttaatatcctcgacaagtaattcttgcaatgttca 130
Query: 1574 ggccaagaaaattggtgtatatttttcaatccattttctcgacatctagacacaaaactg 1633
||||||||||| ||||||||||||||| |||||||||| |||||| ||| || | ||
Sbjct: 129 ggccaagaaaaccggtgtatatttttcagcccattttctctacatcttgac-cagagttg 71
Query: 1634 cttttcagaaagcatcttatagagggcatctgcaattgcatgctgatcatggggatcaac 1693
||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 70 cttgtcagaaagaagcttatagagtgcatctgcaattgcatgctgatcgtggggatcaac 11
Score = 163 bits (82), Expect = 3e-038
Identities = 256/314 (81%)
Strand = Plus / Minus
Query: 1066 atcttcaaagatgacttgcttttcagttctcccccttctttctactactgaagaagccca 1125
|||||||||||| ||||| ||||||||||| |||||||||||||||| || ||||||||
Sbjct: 640 atcttcaaagataacttgtttttcagttcttccccttctttctactatcgaggaagccca 581
Query: 1126 cttaactaagtacttccttaaaccttctcctccccaacgatactcaatatgtgatcggta 1185
||| |||| ||||| ||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct: 580 cttcactagatactttcttaaaccttctcctccccaacggtactcgatatgggactggta 521
Query: 1186 gttatggtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgtaatgg 1245
||| |||| || |||||||| ||||||||| ||||||| ||||| || | | || ||
Sbjct: 520 attacggtctaatgcaaatgtcacacgggaagtgcttggtgaatcaccagcccgcaaagg 461
Query: 1246 ataatatatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcc 1305
||| ||| ||| ||||||||||||||||| || |||||||| || || || ||||||
Sbjct: 460 gtaaaataaatcactcccactattgcatatgaaagcatcaaaatctgtaggagccatgcc 401
Query: 1306 tgtgcgtactattacagactgtagctctgctattgtcagtgaagtagacagcacaaaacc 1365
|| || || || || |||| ||||| ||||||| ||||| |||| |||||||||
Sbjct: 400 tgcagatattaatagggaatgtatctctgacattgtcaaggaagtcgacaacacaaaacc 341
Query: 1366 tgtagaacctgaca 1379
||| ||||||||||
Sbjct: 340 tgttgaacctgaca 327
>gb|BU968420.1|BU968420 HB07H08r BC Hordeum vulgare subsp. vulgare cDNA clone HB07H08
5-PRIME, mRNA sequence
Length = 533
Score = 159 bits (80), Expect = 4e-037
Identities = 157/180 (87%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 1514 aaagcaggatgtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttca 1573
|||||||| | |||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 188 aaagcagggtatcttgggctaagagttaatatcctcgacaagtaattcttgcaatgttca 129
Query: 1574 ggccaagaaaattggtgtatatttttcaatccattttctcgacatctagacacaaaactg 1633
||||||||||| ||||||| ||||||| |||||||||| |||||| ||| || | ||
Sbjct: 128 ggccaagaaaaccggtgtat-tttttcagcccattttctctacatcttgac-cagagttg 71
Query: 1634 cttttcagaaagcatcttatagagggcatctgcaattgcatgctgatcatggggatcaac 1693
||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 70 cttgtcagaaagaagcttatagagtgcatctgcaattgcatgctgatcgtggggatcaac 11
Score = 52.0 bits (26), Expect = 7e-005
Identities = 155/198 (78%)
Strand = Plus / Minus
Query: 1182 ggtagttatggtccaacgcaaatgtaacacgggaattgcttggcacatcactagactgta 1241
|||| ||| |||| || |||||||| ||||||||| ||||||| ||||| || | | |
Sbjct: 523 ggtaattacggtctaatgcaaatgtcacacgggaagtgcttggtgaatcaccagcccgca 464
Query: 1242 atggataatatatatcgctcccactattgcatataaaggcatcaaagtcagtcgggagca 1301
| || ||| ||| ||| ||||||||||||||||| || |||||||| || || || ||
Sbjct: 463 aagggtaaaataaatcactcccactattgcatatgaaagcatcaaaatctgtaggagcca 404
Query: 1302 tgcctgtgcgtactattacagactgtagctctgctattgtcagtgaagtagacagcacaa 1361
|||||| || || || || |||| ||||| ||||||| ||||| |||| |||||
Sbjct: 403 tgcctgcagatattaatagggaatgtatctctgacattgtcaaggaagtcgacaacacaa 344
Query: 1362 aacctgtagaacctgaca 1379
||||||| ||||||||||
Sbjct: 343 aacctgttgaacctgaca 326
>gb|BU975604.1|BU975604 HB31K24r BC Hordeum vulgare subsp. vulgare cDNA clone HB31K24
5-PRIME, mRNA sequence
Length = 563
Score = 135 bits (68), Expect = 6e-030
Identities = 141/164 (85%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1542 atatccttgacaagtaattcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 420 atatccttgacaggtgattcttgcaatgttcaggccaggaaaattggtgaatatttttta 361
Query: 1602 atccattttctcgacatctagacacaaaactgcttttcagaaagcatcttatagagggca 1661
||||||||||| ||||| ||| |||| ||||| || ||||| | ||||| || |||
Sbjct: 360 gtccattttctctgcatcttgac-caaagttgcttctcggaaagaagtttatacagtgca 302
Query: 1662 tctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
|||||||| |||| ||||||||| ||||| ||||||||||||||
Sbjct: 301 tctgcaatggcattctgatcatgtggatcgacaaggagaccatt 258
Score = 109 bits (55), Expect = 3e-022
Identities = 88/99 (88%)
Strand = Plus / Minus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||
Sbjct: 141 acctgatggatttcaacaggagctccattttttgtagcaataacaggcaaaccattcata 82
Query: 1773 gcagcctctatcaaggtgacaccaaattgttcaaaataa 1811
|| |||||||||||||| || ||||||||||| ||||||
Sbjct: 81 gcggcctctatcaaggtaacgccaaattgttcgaaataa 43
>gb|BM444184.1|BM444184 EBem09_SQ004_G12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_G12 5', mRNA sequence
Length = 406
Score = 109 bits (55), Expect = 3e-022
Identities = 181/223 (81%)
Strand = Plus / Minus
Query: 675 caatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtat 734
|||||||||| ||||| || || ||||| |||||||| || ||||| || || || || |
Sbjct: 232 caatgatattggagctgtccagtgcaacgacatcctgcaaggggtatctcctcactgtgt 173
Query: 735 ggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctc 794
|||| || || || | | ||||||| ||||||| | ||| | ||| |||||||||| |
Sbjct: 172 ggattctgtttgcggcaatgttgaagtcacccttcaggattatggtcctgtggagacccc 113
Query: 795 caaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggca 854
| | |||||| || ||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 112 ctagcagttcttcataatcggaatcaccactttcaccaacaatgaccacaatatttggca 53
Query: 855 actctatgccccagcgaatagacaaataccttagagcctgaga 897
||||||| |||||||| | | |||| ||||||| ||||||||
Sbjct: 52 actctatcccccagcgtacaaacaagtaccttattgcctgaga 10
>gb|BE193243.1|BE193243 HVSMEh0080E17f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0080E17f, mRNA sequence
Length = 689
Score = 93.7 bits (47), Expect = 2e-017
Identities = 233/295 (78%)
Strand = Plus / Minus
Query: 1085 ttttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttcctt 1144
||||||||||| ||| |||||| ||||| || ||||||||||| |||| ||||| |||
Sbjct: 515 ttttcagttcttccctttctttttactatcgaggaagcccacttcactagatactttctt 456
Query: 1145 aaaccttctcctccccaacgatactcaatatgtgatcggtagttatggtccaacgcaaat 1204
| ||||||||||||||| | ||||| ||||| || |||| ||| |||| || ||||||
Sbjct: 455 acaccttctcctccccacgggtactcgatatgggactggtaattacggtctaatgcaaat 396
Query: 1205 gtaacacgggaattgcttggcacatcactagactgtaatggataatatatatcgctccca 1264
|| ||||||||| |||| || ||||| || | | || || ||| ||| ||| ||||||
Sbjct: 395 gtcacacgggaagtgctgggtgaatcaccagcccgcaaagggtaaaataaatcactccca 336
Query: 1265 ctattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcgtactattacagac 1324
||||||||||| || |||||||| || || || |||||||| || || || ||
Sbjct: 335 ctattgcatatgaaagcatcaaaatctgtaggagccatgcctgcagatattaatagggaa 276
Query: 1325 tgtagctctgctattgtcagtgaagtagacagcacaaaacctgtagaacctgaca 1379
|||| ||||| ||||||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 275 tgtatctctgacattgtcaaggaagtcgacaacacaaaacctgttgaacctgaca 221
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 1514 aaagcaggatgtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttca 1573
|||||||| | |||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct: 83 aaagcagggtatcttgggctaagagttaatatcctcgacaagtaattcttgcaatgttca 24
Query: 1574 ggccaagaaaattggtgtatatt 1596
||||||||||| ||||||||||
Sbjct: 23 ggccaagaaaaccggtgtatatt 1
>gb|CB874869.1|CB874869 HX06J01w HX Hordeum vulgare subsp. vulgare cDNA clone HX06J01
3-PRIME, mRNA sequence
Length = 563
Score = 93.7 bits (47), Expect = 2e-017
Identities = 152/187 (81%)
Strand = Plus / Plus
Query: 675 caatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtat 734
|||||||||| ||||| || || ||||| |||||||| || ||||| || || || || |
Sbjct: 373 caatgatattggagctgtccagtgcaacgacatcctgcaaggggtatctcctcactgtgt 432
Query: 735 ggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctc 794
|||| || || || | | ||||||| ||||||| | ||| | ||| |||||||||| |
Sbjct: 433 ggattctgtttgcggcaatgttgaagtcacccttcaggattatggtcctgtggagacccc 492
Query: 795 caaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggca 854
| | |||||| || ||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 493 ctagcagttcttcataatcggaatcaccactttcaccaacaatgaccacaatatttggca 552
Query: 855 actctat 861
|||||||
Sbjct: 553 actctat 559
>gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags18o22, mRNA sequence
Length = 629
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1559 ttcttgcaatgttcaggccaagaaaattggtgtatatttt 1598
||||||||||||||||||||||||||| | || |||||||
Sbjct: 65 ttcttgcaatgttcaggccaagaaaatcgatggatatttt 26
>gb|BU985379.1|BU985379 HF06P13r HF Hordeum vulgare subsp. vulgare cDNA clone HF06P13
5-PRIME, mRNA sequence
Length = 559
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1559 ttcttgcaatgttcaggccaagaaaattggtgtatatttt 1598
||||||||||||||||||||||||||| | || |||||||
Sbjct: 258 ttcttgcaatgttcaggccaagaaaatcgatggatatttt 219
>gb|BU985680.1|BU985680 HF08E20r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E20
5-PRIME, mRNA sequence
Length = 589
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1559 ttcttgcaatgttcaggccaagaaaattggtgtatatttt 1598
||||||||||||||||||||||||||| | || |||||||
Sbjct: 135 ttcttgcaatgttcaggccaagaaaatcgatggatatttt 96
>gb|CA016632.1|CA016632 HV08B18u HV Hordeum vulgare subsp. vulgare cDNA clone HV08B18
3-PRIME, mRNA sequence
Length = 559
Score = 56.0 bits (28), Expect = 4e-006
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 779 gtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatg 838
|||||||| || ||||||||||| || |||||||| ||||| ||| ||||||| || |
Sbjct: 458 gtcttgtgaaggcctccaaacagctcttcgtaatctgaatcgccactttcaccgaccaga 517
Query: 839 accacagcatttggcaactctatgccccagcgaatagaca 878
| ||| | ||| |||||||||||||||| |||| |||||
Sbjct: 518 atcacgacgtttcgcaactctatgccccaacgaacagaca 557
>gb|BG416908.2|BG416908 HVSMEk0015C11f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0015C11f, mRNA sequence
Length = 488
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1138 cttccttaaaccttctcctccccaacgata 1167
|||||||||||||||||||||||| |||||
Sbjct: 113 cttccttaaaccttctcctccccagcgata 84
>gb|BF619008.2|BF619008 HVSMEc0008G05f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0008G05f, mRNA sequence
Length = 590
Score = 48.1 bits (24), Expect = 0.001
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1777 cctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
||||||||||||||||||| |||||| ||| ||| | ||||||||||||||
Sbjct: 390 cctctatcaaggtgacaccgcattgtttaaagtaagctacatttacaaaagc 339
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1436 tttttaacagagtctacagcaatga 1460
|||||||||||||| ||||||||||
Sbjct: 21 tttttaacagagtcaacagcaatga 45
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,134
Number of Sequences: 312970
Number of extensions: 146134
Number of successful extensions: 37503
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37429
Number of HSP's gapped (non-prelim): 58
length of query: 1829
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1810
effective length of database: 169,188,109
effective search space: 306230477290
effective search space used: 306230477290
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)