BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA li... 315 1e-084
gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. v... 281 2e-074
gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Le... 274 5e-072
gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-a... 214 4e-054
gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgar... 190 5e-047
gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedl... 176 8e-043
gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedl... 157 8e-037
gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgar... 143 1e-032
gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. v... 131 4e-029
gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. v... 94 9e-018
gb|BE456133.3|BE456133 HVSMEg0019P07f Hordeum vulgare pre-a... 82 4e-014
gb|CA022858.1|CA022858 HZ44I22r HZ Hordeum vulgare subsp. v... 82 4e-014
gb|BF257803.3|BF257803 HVSMEf0013P05f Hordeum vulgare seedl... 80 1e-013
gb|BU980777.1|BU980777 HA21K17r HA Hordeum vulgare subsp. v... 80 1e-013
gb|BF625837.2|BF625837 HVSMEa0013M18f Hordeum vulgare seedl... 62 3e-008
gb|BJ463449.1|BJ463449 BJ463449 K. Sato unpublished cDNA li... 54 8e-006
gb|BQ465860.1|BQ465860 HU04O07r HU Hordeum vulgare subsp. v... 44 0.008
gb|BQ466830.1|BQ466830 HS01L13T HS Hordeum vulgare subsp. v... 44 0.008
gb|BQ467132.1|BQ467132 HS02L13r HS Hordeum vulgare subsp. v... 44 0.008
gb|CA015982.1|CA015982 HV10N22u HV Hordeum vulgare subsp. v... 40 0.12
gb|BF625658.2|BF625658 HVSMEa0013C12f Hordeum vulgare seedl... 38 0.48
gb|BF266192.2|BF266192 HV_CEa0014G24f Hordeum vulgare seedl... 38 0.48
gb|BE558586.2|BE558586 HV_CEb0018P07f Hordeum vulgare seedl... 38 0.48
gb|AV915679.1|AV915679 AV915679 K. Sato unpublished cDNA li... 38 0.48
gb|AV916868.1|AV916868 AV916868 K. Sato unpublished cDNA li... 38 0.48
gb|BJ464645.1|BJ464645 BJ464645 K. Sato unpublished cDNA li... 38 0.48
gb|BQ469784.1|BQ469784 HZ01N19r HZ Hordeum vulgare subsp. v... 38 0.48
gb|BU978903.1|BU978903 HA14J14r HA Hordeum vulgare subsp. v... 38 0.48
gb|BU979336.1|BU979336 HA15N06r HA Hordeum vulgare subsp. v... 38 0.48
gb|BU985834.1|BU985834 HF08M10r HF Hordeum vulgare subsp. v... 38 0.48
gb|BU986432.1|BU986432 HF11N06r HF Hordeum vulgare subsp. v... 38 0.48
gb|BU987492.1|BU987492 HF14O11r HF Hordeum vulgare subsp. v... 38 0.48
gb|BU996325.1|BU996325 HM13D22r HM Hordeum vulgare subsp. v... 38 0.48
gb|CA026989.1|CA026989 HZ57I24r HZ Hordeum vulgare subsp. v... 38 0.48
gb|CV054720.1|CV054720 BNEL112e7 Barley EST endosperm libra... 38 0.48
gb|CV063832.1|CV063832 BNEL93f7 Barley EST endosperm librar... 38 0.48
>gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags3f23, mRNA sequence
Length = 643
Score = 315 bits (159), Expect = 1e-084
Identities = 303/351 (86%)
Strand = Plus / Minus
Query: 414 cgtattcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctg 473
||||||||||| || || |||||| |||| ||||| |||||||||||||||||| ||||
Sbjct: 601 cgtattcttgtgcccttaccagaggcggaagctaggcatgctatgtttgaagagttcctt 542
Query: 474 ccatatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaagga 533
|||| || | | ||||||||||||||| ||||||| |||||||||||| || ||||||
Sbjct: 541 ccattgactcaagacacaatggagattccatatgatgctcttgtggagaacaccgaagga 482
Query: 534 tattctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgg 593
||||| ||||||||||| ||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 481 tattccggctctgatatacgccttgtttgtaaggaggcagcaatgcaaccacttagacgg 422
Query: 594 gtaatggcagttcttgaaggcaggaaagaagaggtccctgagggtgagttgcctgaagtt 653
||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 421 ttaatggcagttctagaaggcagacaagaagaaatcccagaggatgagttgcctgaagtt 362
Query: 654 ggcccagtaactacagaagatattgaacttgctttgaggaatacaagaccgtctgctcat 713
|||||| || | ||||| ||||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 361 ggcccaatagcgacagaggatatcgaacttgctctgaggaatacacggccgtctgctcat 302
Query: 714 cttcatgcacatagatacgaaaagttcaaccaagattatggcagtcatgtc 764
|| |||||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 301 ctccatgcacatagatatgagaagttcaatcaagattatggcagccatgtc 251
>gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. vulgare cDNA clone HU05K13
3-PRIME, mRNA sequence
Length = 483
Score = 281 bits (142), Expect = 2e-074
Identities = 244/278 (87%)
Strand = Plus / Minus
Query: 488 cacaatggagattccctatgatgttcttgtggagaaaactgaaggatattctggctctga 547
||||||||||||||| ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 465 cacaatggagattccatatgatgctcttgtggagaacaccgaaggatattccggctctga 406
Query: 548 tattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttct 607
||| ||||| || || ||||| ||||||||||| || || |||||| |||||||||||||
Sbjct: 405 tatacgccttgtttgtaaggaggcagcaatgcaaccacttagacggttaatggcagttct 346
Query: 608 tgaaggcaggaaagaagaggtccctgagggtgagttgcctgaagttggcccagtaactac 667
|||||||| ||||||| |||| |||| |||||||||||||||||||||| || | ||
Sbjct: 345 agaaggcagacaagaagaaatcccagaggatgagttgcctgaagttggcccaatagcgac 286
Query: 668 agaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacatag 727
||| ||||| ||||||||| ||||||||||| | |||||||||||||| |||||||||||
Sbjct: 285 agaggatatcgaacttgctctgaggaatacacggccgtctgctcatctccatgcacatag 226
Query: 728 atacgaaaagttcaaccaagattatggcagtcatgtcc 765
||| || |||||||| |||||||||||||| |||||||
Sbjct: 225 atatgagaagttcaatcaagattatggcagccatgtcc 188
>gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 535
Score = 274 bits (138), Expect = 5e-072
Identities = 244/278 (87%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 488 cacaatggagattccctatgatgttcttgtggagaaaactgaaggatattctggctctga 547
||||||||||||||||||||||| |||||||||||| || |||| |||||| ||||||||
Sbjct: 13 cacaatggagattccctatgatgctcttgtggagaacaccgaag-atattccggctctga 71
Query: 548 tattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttct 607
||| ||||| || || ||||| ||||||||||| || || |||||| |||||||||||||
Sbjct: 72 tatacgccttgtttgtaaggaggcagcaatgcaaccacttagacggttaatggcagttct 131
Query: 608 tgaaggcaggaaagaagaggtccctgagggtgagttgcctgaagttggcccagtaactac 667
|||||||| ||||||| |||| |||| |||||||||||||||||||||| || | ||
Sbjct: 132 agaaggcagacaagaagaaatcccagaggatgagttgcctgaagttggcccaatagcgac 191
Query: 668 agaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacatag 727
||| ||||| ||||||||| ||||||||||| | |||||||||||||| |||||||||||
Sbjct: 192 agaggatatcgaacttgctctgaggaatacacggccgtctgctcatctccatgcacatag 251
Query: 728 atacgaaaagttcaaccaagattatggcagtcatgtcc 765
||| || |||||||| |||||||||||||| |||||||
Sbjct: 252 atatgagaagttcaatcaagattatggcagccatgtcc 289
>gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011H06f, mRNA sequence
Length = 543
Score = 214 bits (108), Expect = 4e-054
Identities = 285/344 (82%)
Strand = Plus / Plus
Query: 81 aaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgattgta 140
||||| || |||||||||||||| || || || ||||| ||||| || || || |||||
Sbjct: 8 aaagcggtcgctactgagtgcaatactacattcttcaacatttcggcttcatcaattgtc 67
Query: 141 agcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcat 200
||||| ||||| || || || ||||| ||||| ||||| | || || |||||||| |||
Sbjct: 68 agcaaatggcgtggagattctgagaagctagtcaaagttctttttgagcttgcaagacat 127
Query: 201 catgcaccatctactattttccttgatgagattgatgctatcattagtcaacgtggtgaa 260
||||||||||| || || || |||||||||||||||||||| |||||||| |||||||||
Sbjct: 128 catgcaccatccacaatatttcttgatgagattgatgctattattagtcagcgtggtgaa 187
Query: 261 gctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatggat 320
|||||||| || ||||||||||| || || ||||| ||||| ||| | || |||||||||
Sbjct: 188 gctcgtagcgagcatgaagctagtcgacgcttgaagactgaactacttattcagatggat 247
Query: 321 gggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatgggag 380
|| ||||| || || | || | || ||||| || |||||||||||| ||||||||||
Sbjct: 248 ggcttgacaaaaaccaaagacttagtatttgtgcttgcagcaacaaatctaccatgggaa 307
Query: 381 ttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 308 ttggatgcagctatgctccgtcggcttgagaagcggattcttgt 351
>gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A075 5-PRIME, mRNA sequence
Length = 670
Score = 190 bits (96), Expect = 5e-047
Identities = 201/236 (85%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
|||||||| |||||||||||||| || || || |||||||||||||||||||| ||||||
Sbjct: 28 cttgcaagacatcatgcaccatccacaatatttcttgatgagattgatgctattattagt 87
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctatta 308
|| ||||||||||||||||| || ||||||||||| || || ||||| ||||| ||| |
Sbjct: 88 cagcgtggtgaagctcgtagcgagcatgaagctagtcgacgcttgaagactgaactactt 147
Query: 309 atacagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaat 368
|| ||||||||||| ||||| || || | || | || ||||| || ||||||||||||
Sbjct: 148 attcagatggatggcttgacaaaaaccaaagacttagtatttgtgcttgcagcaacaaat 207
Query: 369 ttaccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
|||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 208 ctaccatgggaattggatgcagctatgctccgtcggcttgagaagcggattcttgt 263
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 678 gaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacat 725
|||||||||||||| || ||||| ||||| || ||||| || ||||||
Sbjct: 517 gaacttgctttgagcaacacaaggccgtcagcacatctccaagcacat 564
>gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021J12f, mRNA sequence
Length = 815
Score = 176 bits (89), Expect = 8e-043
Identities = 260/317 (82%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| |||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 246 ggtctactatcaccgcggaaaggcatcttactttttggtcctccaggaacagggaagacc 305
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||| | || ||||| || |||||||||||||| || || || ||||| ||||| || ||
Sbjct: 306 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttccgcttca 365
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| | ||| ||||| || || || ||||| ||||| |||| | || || |||
Sbjct: 366 tcaattgtcaccaaatggcgtggagattctgagaagctagtcaaaggtctttttgagctt 425
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
||||| ||||||||||||| || || || |||||||||||||||||||| |||| ||||
Sbjct: 426 gcaagacatcatgcaccattcacaatatttcttgatgagattgatgctattattattcaa 485
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
||||||||||||||||| || ||||||||||| || || ||||| ||||| ||| | ||
Sbjct: 486 cgtggtgaagctcgtagcgagcatgaagctagtcgacgcttgaagactgaactacttatt 545
Query: 312 cagatggatgggttgac 328
||||||||||| |||||
Sbjct: 546 cagatggatggcttgac 562
>gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002L12f, mRNA sequence
Length = 852
Score = 157 bits (79), Expect = 8e-037
Identities = 253/311 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 436 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 495
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||| | || ||||| || |||||||||||||| || || || || || ||||| || ||
Sbjct: 496 atgttggccaaagcggtcgctactgagtgcaatactacattcttgaacatttcggcttca 555
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| | ||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 556 tcaattgtcaacaaatggcgtggagattctgagaagctagtcaaagttctttttgagctt 615
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
||||| ||| |||||||| | || || || |||||||||||||||||||| |||||||||
Sbjct: 616 gcaagacattatgcaccaaccacaatatttcttgatgagattgatgctattattagtcaa 675
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
||||||||||||||| || ||||||||||| || || ||||| | ||| ||| | ||
Sbjct: 676 cgtggtgaagctcgtgccgagcatgaagctagtcgacgcttgaagaatgaactacttatt 735
Query: 312 cagatggatgg 322
|||||||||||
Sbjct: 736 cagatggatgg 746
Score = 46.1 bits (23), Expect = 0.002
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 357 gcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctggagaagcgt 416
|||||||||||| | |||||||| ||||||||| ||||| |||||||| ||||| ||
Sbjct: 781 gcagcaacaaatctcccatggga-atggatgcaggtatgcttcgtcggcttgagaaacgg 839
Query: 417 attcttg 423
|||||||
Sbjct: 840 attcttg 846
>gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O136 5-PRIME, mRNA sequence
Length = 752
Score = 143 bits (72), Expect = 1e-032
Identities = 238/291 (81%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 449 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 508
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||| | || ||||| || |||||||||||||| || || || ||||| ||||| || ||
Sbjct: 509 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttcggcttca 568
Query: 132 tcga-ttgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaact 190
|| | |||| ||||| ||||| || || || ||||| ||||| ||||| | || || ||
Sbjct: 569 tcaatttgtcagcaaatggcgtggagattctgagaagctagtcaaagttctttttgagct 628
Query: 191 tgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtca 250
|||||| |||||||||||||| || || || |||||||||||||||||||| ||||||||
Sbjct: 629 tgcaagacatcatgcaccatccacaatatttcttgatgagattgatgctattattagtca 688
Query: 251 acgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactga 301
|| || | | ||||||| || ||||||||||| || || ||||| |||||
Sbjct: 689 gcg-ggggganctcgtagcgagcatgaagctagtcgacgcttgaagactga 738
>gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. vulgare cDNA clone HA13G08
5-PRIME, mRNA sequence
Length = 544
Score = 131 bits (66), Expect = 4e-029
Identities = 186/226 (82%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 319 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 378
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||| | || ||||| || |||||||||||||| || || || ||||| ||||| || ||
Sbjct: 379 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttcggcttca 438
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 439 tcaattgtcagcaaatggcgtggagattctgagaagctagtcaaagttctttttgagctt 498
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatg 237
||||| |||||||||||||| || || || ||||||||||||||||
Sbjct: 499 gcaagacatcatgcaccatccacaatatttcttgatgagattgatg 544
>gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11G09
5-PRIME, mRNA sequence
Length = 620
Score = 93.7 bits (47), Expect = 9e-018
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 432 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 491
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||| | || ||||| || |||||||||||||| || || || ||||| ||||| || ||
Sbjct: 492 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttcggcttca 551
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagt 178
|| ||||| ||||| ||||| || || || ||||| ||||| |||||
Sbjct: 552 tcaattgtcagcaaatggcgtggagattctgagaagctagtcaaagt 598
>gb|BE456133.3|BE456133 HVSMEg0019P07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019P07f, mRNA sequence
Length = 592
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 416 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 475
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttc 124
||| | || ||||| || |||||||||||||| || || || ||||| |||||
Sbjct: 476 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttc 528
>gb|CA022858.1|CA022858 HZ44I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44I22
5-PRIME, mRNA sequence
Length = 563
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 432 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 491
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttc 124
||| | || ||||| || |||||||||||||| || || || ||||| |||||
Sbjct: 492 atgttggccaaagcggtcgctactgagtgcaatactacattcttcaacatttc 544
>gb|BF257803.3|BF257803 HVSMEf0013P05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013P05f, mRNA sequence
Length = 541
Score = 79.8 bits (40), Expect = 1e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 430 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 489
Query: 72 atgctagctaaagctgtggctactgagtgcaa 103
||| | || ||||| || ||||||||||||||
Sbjct: 490 atgttggccaaagcggtcgctactgagtgcaa 521
>gb|BU980777.1|BU980777 HA21K17r HA Hordeum vulgare subsp. vulgare cDNA clone HA21K17
5-PRIME, mRNA sequence
Length = 547
Score = 79.8 bits (40), Expect = 1e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 448 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagacc 507
Query: 72 atgctagctaaagctgtggctactgagtgcaa 103
||| | || ||||| || ||||||||||||||
Sbjct: 508 atgttggccaaagcggtcgctactgagtgcaa 539
>gb|BF625837.2|BF625837 HVSMEa0013M18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013M18f, mRNA sequence
Length = 516
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagac 70
|||||| ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 438 ggtctactatcaccgtggaaaggcatcttactttttggtcctccaggaacagggaagac 496
>gb|BJ463449.1|BJ463449 BJ463449 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27m14 5', mRNA sequence
Length = 437
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgt 88
||||| ||||| || |||||||||||||| || || ||||| ||||| |||||||||||
Sbjct: 68 aaaggaatattgctttttggtccacctggtacggggaagaccatgcttgctaaagctgt 126
>gb|BQ465860.1|BQ465860 HU04O07r HU Hordeum vulgare subsp. vulgare cDNA clone HU04O07
5-PRIME, mRNA sequence
Length = 590
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 33 ggcatattactgtttggtccacctgg 58
|||||||| |||||||||||||||||
Sbjct: 71 ggcatattgctgtttggtccacctgg 96
>gb|BQ466830.1|BQ466830 HS01L13T HS Hordeum vulgare subsp. vulgare cDNA clone HS01L13
5-PRIME, mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 33 ggcatattactgtttggtccacctgg 58
|||||||| |||||||||||||||||
Sbjct: 450 ggcatattgctgtttggtccacctgg 475
>gb|BQ467132.1|BQ467132 HS02L13r HS Hordeum vulgare subsp. vulgare cDNA clone HS02L13
5-PRIME, mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 33 ggcatattactgtttggtccacctgg 58
|||||||| |||||||||||||||||
Sbjct: 450 ggcatattgctgtttggtccacctgg 475
>gb|CA015982.1|CA015982 HV10N22u HV Hordeum vulgare subsp. vulgare cDNA clone HV10N22
3-PRIME, mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 678 gaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacat 725
|||||||||||||| || ||||| ||||| || ||||| || ||||||
Sbjct: 448 gaacttgctttgagcaacacaaggccgtcagcacatctccaagcacat 401
>gb|BF625658.2|BF625658 HVSMEa0013C12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013C12f, mRNA sequence
Length = 517
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 466 ctgtatggtccaccaggaacaggaaag 492
>gb|BF266192.2|BF266192 HV_CEa0014G24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014G24f, mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.48
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 205 caccatctactattttccttgatgagattgatgct 239
||||||| | |||||| |||||||||||||||||
Sbjct: 208 caccatcaattatttttattgatgagattgatgct 242
>gb|BE558586.2|BE558586 HV_CEb0018P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018P07f, mRNA sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 223 ttgatgagattgatgctat 241
|||||||||||||||||||
Sbjct: 19 ttgatgagattgatgctat 37
>gb|AV915679.1|AV915679 AV915679 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15j07 5', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 563 ccacctggaacgggaaagacattgcttgcta 593
>gb|AV916868.1|AV916868 AV916868 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o15 5', mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 104 ctgtatggtccaccaggaacaggaaag 130
>gb|BJ464645.1|BJ464645 BJ464645 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35l02 5', mRNA sequence
Length = 563
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 167 ccacctggaacgggaaagacattgcttgcta 197
>gb|BQ469784.1|BQ469784 HZ01N19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01N19
5-PRIME, mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 274 ctgtatggtccaccaggaacaggaaag 300
>gb|BU978903.1|BU978903 HA14J14r HA Hordeum vulgare subsp. vulgare cDNA clone HA14J14
5-PRIME, mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 331 ccacctggaacgggaaagacattgcttgcta 361
>gb|BU979336.1|BU979336 HA15N06r HA Hordeum vulgare subsp. vulgare cDNA clone HA15N06
5-PRIME, mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 331 ccacctggaacgggaaagacattgcttgcta 361
>gb|BU985834.1|BU985834 HF08M10r HF Hordeum vulgare subsp. vulgare cDNA clone HF08M10
5-PRIME, mRNA sequence
Length = 674
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 322 ccacctggaacgggaaagacattgcttgcta 352
>gb|BU986432.1|BU986432 HF11N06r HF Hordeum vulgare subsp. vulgare cDNA clone HF11N06
5-PRIME, mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 350 ccacctggaacgggaaagacattgcttgcta 380
>gb|BU987492.1|BU987492 HF14O11r HF Hordeum vulgare subsp. vulgare cDNA clone HF14O11
5-PRIME, mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.48
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 51 ccacctggaacaggaaagacaatgctagcta 81
||||||||||| ||||||||| |||| ||||
Sbjct: 422 ccacctggaacgggaaagacattgcttgcta 452
>gb|BU996325.1|BU996325 HM13D22r HM Hordeum vulgare subsp. vulgare cDNA clone HM13D22
5-PRIME, mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 519 ctgtatggtccaccaggaacaggaaag 545
>gb|CA026989.1|CA026989 HZ57I24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57I24
5-PRIME, mRNA sequence
Length = 495
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 260 ctgtatggtccaccaggaacaggaaag 286
>gb|CV054720.1|CV054720 BNEL112e7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e7 5' similar to
AAA-ATPase-like protein, mRNA sequence
Length = 702
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 157 ctgtatggtccaccaggaacaggaaag 183
>gb|CV063832.1|CV063832 BNEL93f7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93f7 5' similar to
AAA-ATPase-like protein, mRNA sequence
Length = 703
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 ctgtttggtccacctggaacaggaaag 68
|||| ||||||||| ||||||||||||
Sbjct: 157 ctgtatggtccaccaggaacaggaaag 183
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,708
Number of Sequences: 312970
Number of extensions: 74708
Number of successful extensions: 19389
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19336
Number of HSP's gapped (non-prelim): 48
length of query: 893
length of database: 175,134,539
effective HSP length: 19
effective length of query: 874
effective length of database: 169,188,109
effective search space: 147870407266
effective search space used: 147870407266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)