BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 D... 577 e-163
gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA li... 488 e-136
gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA li... 484 e-135
emb|AJ234443.1|HVU234443 Hordeum vulgare partial mRNA; clon... 270 8e-071
gb|BJ447422.1|BJ447422 BJ447422 K. Sato unpublished cDNA li... 268 3e-070
gb|CB858574.1|CB858574 HI07I18w HI Hordeum vulgare subsp. v... 159 2e-037
gb|AL509293.1|AL509293 AL509293 Hordeum vulgare Barke devel... 133 1e-029
gb|BM372303.2|BM372303 EBro03_SQ004_J09_R root, 3 week, wat... 58 5e-007
gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA li... 56 2e-006
gb|CA014678.1|CA014678 HT12A16r HT Hordeum vulgare subsp. v... 56 2e-006
gb|CV054787.1|CV054787 BNEL113c8 Barley EST endosperm libra... 56 2e-006
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 44 0.008
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 44 0.008
gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. v... 44 0.008
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 42 0.032
gb|BM816529.1|BM816529 HC111H03_T3.ab1 HC Hordeum vulgare s... 38 0.50
>gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_H19 5', mRNA sequence
Length = 527
Score = 577 bits (291), Expect = e-163
Identities = 465/523 (88%)
Strand = Plus / Minus
Query: 308 ggggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttg 367
||||||| |||||||||||||| ||||| || || ||||||||||||||||||||||| |
Sbjct: 527 ggggcattgacataccaccagaaacaacgatctcaatgccttcacgcacagaaagattag 468
Query: 368 gccttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttg 427
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 467 gccttatcacatcctttgagttcaccatgaagatatcaccaatataaagatggttggttg 408
Query: 428 ggacatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatg 487
||||||| || |||||||| || |||||||||||||| |||||||| || ||||| || |
Sbjct: 407 ggacatacacacagtaaaggtcctcttgaccagaatagctctggagagagactgatgagg 348
Query: 488 tgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttga 547
| ||||| ||||| |||||||| |||| ||||||||||| ||||||||| | |||||||
Sbjct: 347 taatgaatccaaatgcatattccccaatacgaggatgccgtatgatgactgcctccttga 288
Query: 548 acgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtaga 607
| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 287 atgcctgtttgttttgatctggtgatatagcagcactaatttgcttggacgcattgtaga 228
Query: 608 tatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgccc 667
|||| || ||||| |||||||||||||| ||||| || |||| || ||| |||||||| |
Sbjct: 227 tatggcgcacaagtggcatgcgcttaatgatccattcaccaatgccaagaacagatgctc 168
Query: 668 caagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagc 727
||| |||||||||||| |||||||| | |||||||||||||||||||| |||| ||||
Sbjct: 167 caacccaagatgacatgaagactccaacgaaaaatatgaaagtaacagaagtgatgaagc 108
Query: 728 caagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaa 787
||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 107 caagaccaaaaatgttgattcccaattgtgcatagattggagagaagaatccatcaacaa 48
Query: 788 aatgaatgaaccaccaggtgatgtagaacgttattgctatggg 830
||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct: 47 aatgaatgaaccaccaggtgaagtagaatgttatcgctatggg 5
>gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15k07 3', mRNA sequence
Length = 699
Score = 488 bits (246), Expect = e-136
Identities = 423/482 (87%)
Strand = Plus / Plus
Query: 283 tgtgggtcgagggttgacagaatttggggcatcgacataccaccagatacaacaatttcg 342
||||| || |||||||||| ||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 218 tgtggatccagggttgacaaaatctggggcattgacataccaccagaaacaacgatctca 277
Query: 343 atgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaagata 402
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 278 atgccttcacgcacagaaagattaggccttatcacatcctttgagttcaccatgaagata 337
Query: 403 tcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccagaa 462
|||||||| ||||||||||| ||||||||||| || |||||||| || ||||||||||||
Sbjct: 338 tcaccaatataaagatggttggttgggacatacacacagtaaaggtcctcttgaccagaa 397
Query: 463 taactctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgagga 522
|| |||||||| || ||||| || || ||||| ||||| |||||||| |||| |||||||
Sbjct: 398 tagctctggagagagactgatgaggtaatgaatccaaatgcatattccccaatacgagga 457
Query: 523 tgccttatgatgaccacttccttgaacgcctgtttgttctgatctggtgatattgcagca 582
|||| ||||||||| | |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 458 tgccgtatgatgactgcctccttgaatgcctgtttgttttgatctggtgatatagcagca 517
Query: 583 ctaatttgcttcgatgcattgtagatatgacgaacaagaggcatgcgcttaataatccac 642
||||||||||| || |||||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 518 ctaatttgcttggacgcattgtagatatggcgcacaagtggcatgcgcttaatgatccat 577
Query: 643 tcgccaaggctaaggacagatgccccaagccaagatgacataaagactccgatcaaaaat 702
|| |||| || ||| |||||||| |||| |||||||||||| |||||||| | ||||||
Sbjct: 578 tcaccaatgccaagaacagatgctccaacccaagatgacatgaagactccaacgaaaaat 637
Query: 703 atgaaagtaacagatgtgacaaagccaagaccgaatatgttgattcccagttgagcatag 762
|||||||||||||| |||| ||||||||||| || ||||||||||||| ||| ||||||
Sbjct: 638 atgaaagtaacagaagtgatgaagccaagaccaaaaatgttgattcccaattgtgcatag 697
Query: 763 at 764
||
Sbjct: 698 at 699
>gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35h23 3', mRNA sequence
Length = 697
Score = 484 bits (244), Expect = e-135
Identities = 421/480 (87%)
Strand = Plus / Plus
Query: 283 tgtgggtcgagggttgacagaatttggggcatcgacataccaccagatacaacaatttcg 342
||||| || |||||||||| ||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 218 tgtggatccagggttgacaaaatctggggcattgacataccaccagaaacaacgatctca 277
Query: 343 atgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaagata 402
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 278 atgccttcacgcacagaaagattaggccttatcacatcctttgagttcaccatgaagata 337
Query: 403 tcaccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccagaa 462
|||||||| ||||||||||| ||||||||||| || |||||||| || ||||||||||||
Sbjct: 338 tcaccaatataaagatggttggttgggacatacacacagtaaaggtcctcttgaccagaa 397
Query: 463 taactctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgagga 522
|| |||||||| || ||||| || || ||||| ||||| |||||||| |||| |||||||
Sbjct: 398 tagctctggagagagactgatgaggtaatgaatccaaatgcatattccccaatacgagga 457
Query: 523 tgccttatgatgaccacttccttgaacgcctgtttgttctgatctggtgatattgcagca 582
|||| ||||||||| | |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 458 tgccgtatgatgactgcctccttgaatgcctgtttgttttgatctggtgatatagcagca 517
Query: 583 ctaatttgcttcgatgcattgtagatatgacgaacaagaggcatgcgcttaataatccac 642
||||||||||| || |||||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 518 ctaatttgcttggacgcattgtagatatggcgcacaagtggcatgcgcttaatgatccat 577
Query: 643 tcgccaaggctaaggacagatgccccaagccaagatgacataaagactccgatcaaaaat 702
|| |||| || ||| |||||||| |||| |||||||||||| |||||||| | ||||||
Sbjct: 578 tcaccaatgccaagaacagatgctccaacccaagatgacatgaagactccaacgaaaaat 637
Query: 703 atgaaagtaacagatgtgacaaagccaagaccgaatatgttgattcccagttgagcatag 762
|||||||||||||| |||| ||||||||||| || ||||||||||||| ||| ||||||
Sbjct: 638 atgaaagtaacagaagtgatgaagccaagaccaaaaatgttgattcccaattgtgcatag 697
>emb|AJ234443.1|HVU234443 Hordeum vulgare partial mRNA; clone cMWG0733.rev
Length = 239
Score = 270 bits (136), Expect = 8e-071
Identities = 213/239 (89%)
Strand = Plus / Minus
Query: 616 acaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaa 675
||||| |||||||||||||| ||||| || |||| || ||| |||||||| |||| ||||
Sbjct: 239 acaagtggcatgcgcttaatgatccattcaccaatgccaagaacagatgctccaacccaa 180
Query: 676 gatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccg 735
|||||||| |||||||| | |||||||||||||||||||| |||| |||||||||||
Sbjct: 179 gatgacatgaagactccaacgaaaaatatgaaagtaacagaagtgatgaagccaagacca 120
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaaatgttnattcccaattgtgcatagattggagagaagaatccatcaacaaaatgaatg 60
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcat 854
||||||||||||| |||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct: 59 aaccaccaggtgaagtagaatgttatcgctatggggaagagaatcacgcatccagtcat 1
>gb|BJ447422.1|BJ447422 BJ447422 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35h23 5', mRNA sequence
Length = 260
Score = 268 bits (135), Expect = 3e-070
Identities = 223/251 (88%), Gaps = 1/251 (0%)
Strand = Plus / Minus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
|||||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||
Sbjct: 260 ctggtgatatagcagcactaatttgcttggacgcattgtagatatggcgcacaagtggca 201
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
|||||||||| ||||| || |||| || ||| |||||||| |||| |||||||||||| |
Sbjct: 200 tgcgcttaatgatccattcaccaatgccaagaacagatgctccaacccaagatgacatga 141
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatatgttga 745
||||||| | |||||||||||||||||||| |||| ||||||||||| || |||||||
Sbjct: 140 agactccaacgaaaaatatgaaagtaacagaagtgatgaagccaagaccaaaaatgttga 81
Query: 746 ttcccagttgagcatagattggagagaagaatccatcaacaa-aatgaatgaaccaccag 804
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 ttcccaattgtgcatagattggagagaagaatccatcaacaataatgaatgaaccaccag 21
Query: 805 gtgatgtagaa 815
|| | ||||||
Sbjct: 20 gtcaagtagaa 10
>gb|CB858574.1|CB858574 HI07I18w HI Hordeum vulgare subsp. vulgare cDNA clone HI07I18
3-PRIME, mRNA sequence
Length = 549
Score = 159 bits (80), Expect = 2e-037
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 283 tgtgggtcgagggttgacagaatttggggcatcgacataccaccagatacaacaatttcg 342
||||| || |||||||||| ||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 422 tgtggatccagggttgacaaaatctggggcattgacataccaccagaaacaacgatctca 481
Query: 343 atgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaagata 402
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 482 atgccttcacgcacagaaagattaggccttatcacatcctttgagttcaccatgaagata 541
Query: 403 tcaccaat 410
||||||||
Sbjct: 542 tcaccaat 549
>gb|AL509293.1|AL509293 AL509293 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F07u 3',
mRNA sequence
Length = 516
Score = 133 bits (67), Expect = 1e-029
Identities = 112/126 (88%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 283 tgtgggtcgagggttgacagaatttggggcatcgacataccaccagatacaaca-atttc 341
||||| || |||||||||| ||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 360 tgtggatccagggttgacaaaatctggggcattgacataccaccagaaacaaccgatctc 419
Query: 342 gatgccttcacgcacagaaagatttggccttatgacatcctttgaattcaccatgaagat 401
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 420 aatgccttcacgcacagaaagattaggccttatcacatcctttgagttcaccatgaagat 479
Query: 402 atcacc 407
|||||
Sbjct: 480 ntcacc 485
>gb|BM372303.2|BM372303 EBro03_SQ004_J09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_J09 5', mRNA sequence
Length = 501
Score = 58.0 bits (29), Expect = 5e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 283 tgtgggtcgagggttgacagaatttggggcatcgacataccaccagatacaac 335
||||| || |||||||||| ||| |||||||| |||||||||||||| |||||
Sbjct: 61 tgtggatccagggttgacaaaatctggggcattgacataccaccagaaacaac 9
>gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 5', mRNA sequence
Length = 633
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
|||||||||||||| |||| ||||||||| |||||| |||||||
Sbjct: 225 aatccatcaacaaattgaacgaaccaccatgtgatgaagaacgt 182
>gb|CA014678.1|CA014678 HT12A16r HT Hordeum vulgare subsp. vulgare cDNA clone HT12A16
5-PRIME, mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
|||||||||||||| |||| ||||||||| |||||| |||||||
Sbjct: 127 aatccatcaacaaattgaacgaaccaccatgtgatgaagaacgt 84
>gb|CV054787.1|CV054787 BNEL113c8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL113c8 5' similar to P0677H08.7,
mRNA sequence
Length = 588
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgt 818
|||||||||||||| |||| ||||||||| |||||| |||||||
Sbjct: 319 aatccatcaacaaattgaacgaaccaccatgtgatgaagaacgt 276
>gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 907
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110H09_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 917
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H05_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 864
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 911
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109E06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 916
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H02_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 927
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C11_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 865
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108A03_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 895
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaattcc 923
||||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattcc 12
>gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
3-PRIME, mRNA sequence
Length = 580
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 388 ttcaccatgaagatatcaccaatgtaaagatggttcgttgggacatagac 437
||||||| |||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 463 ttcaccaaaaagatatcaccaatatatagatgattggttggcacatagac 512
>gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC106B05_T3.ab1 similar to (AC007369) Sugar transporter
[Arabidopsis thaliana], mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 903 gtcgacgcggccgcgaattcc 923
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816529.1|BM816529 HC111H03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H03_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 928
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 902 ggtcgacgcggccgcgaat 920
|||||||||||||||||||
Sbjct: 36 ggtcgacgcggccgcgaat 18
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,523
Number of Sequences: 312970
Number of extensions: 76523
Number of successful extensions: 19627
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19594
Number of HSP's gapped (non-prelim): 31
length of query: 924
length of database: 175,134,539
effective HSP length: 19
effective length of query: 905
effective length of database: 169,188,109
effective search space: 153115238645
effective search space used: 153115238645
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)