BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 194 3e-048
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 194 3e-048
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 194 3e-048
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 194 3e-048
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 194 3e-048
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 194 3e-048
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 194 3e-048
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 186 8e-046
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 186 8e-046
gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA li... 178 2e-043
gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA li... 178 2e-043
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 178 2e-043
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 145 3e-033
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 145 3e-033
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 143 1e-032
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 139 2e-031
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 139 2e-031
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 139 2e-031
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 139 2e-031
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 139 2e-031
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 139 2e-031
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 139 2e-031
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 139 2e-031
gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA li... 139 2e-031
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 139 2e-031
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 139 2e-031
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 139 2e-031
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 139 2e-031
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 139 2e-031
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 139 2e-031
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 139 2e-031
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 139 2e-031
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 139 2e-031
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 139 2e-031
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 139 2e-031
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 139 2e-031
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 139 2e-031
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 139 2e-031
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 139 2e-031
gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no... 139 2e-031
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 139 2e-031
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 139 2e-031
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 139 2e-031
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 139 2e-031
gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots... 135 3e-030
gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA li... 133 1e-029
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 131 4e-029
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 125 3e-027
gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA li... 123 1e-026
gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA li... 123 1e-026
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 123 1e-026
gb|BJ466129.1|BJ466129 BJ466129 K. Sato unpublished cDNA li... 123 1e-026
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 123 1e-026
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 123 1e-026
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 123 1e-026
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 119 2e-025
gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA li... 119 2e-025
gb|AV919354.1|AV919354 AV919354 K. Sato unpublished cDNA li... 115 2e-024
gb|AV921614.1|AV921614 AV921614 K. Sato unpublished cDNA li... 115 2e-024
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 113 1e-023
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 111 4e-023
gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. v... 111 4e-023
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 107 6e-022
gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Libr... 105 2e-021
gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA li... 105 2e-021
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 103 9e-021
gb|CA027495.1|CA027495 HZ59B20r HZ Hordeum vulgare subsp. v... 103 9e-021
gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA li... 101 4e-020
gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA li... 101 4e-020
gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA li... 101 4e-020
gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. v... 82 3e-014
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 80 1e-013
gb|CA024997.1|CA024997 HZ50O20r HZ Hordeum vulgare subsp. v... 76 2e-012
gb|BE196433.2|BE196433 HVSMEh0092E14f Hordeum vulgare 5-45 ... 74 8e-012
gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. v... 74 8e-012
gb|BJ466941.1|BJ466941 BJ466941 K. Sato unpublished cDNA li... 72 3e-011
gb|AV921085.1|AV921085 AV921085 K. Sato unpublished cDNA li... 70 1e-010
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 64 8e-009
gb|AJ462184.1|AJ462184 AJ462184 S00002 Hordeum vulgare subs... 64 8e-009
gb|BQ756989.1|BQ756989 EBem10_SQ002_G20_R embryo, 2 Day ger... 62 3e-008
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 58 5e-007
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 58 5e-007
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 58 5e-007
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 58 5e-007
gb|BE601859.2|BE601859 HVSMEh0099M17f Hordeum vulgare 5-45 ... 58 5e-007
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 58 5e-007
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 58 5e-007
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 58 5e-007
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 58 5e-007
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 58 5e-007
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 58 5e-007
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 58 5e-007
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 58 5e-007
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 58 5e-007
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 58 5e-007
gb|BQ663387.1|BQ663387 HU02G21u HU Hordeum vulgare subsp. v... 58 5e-007
gb|BM441741.2|BM441741 EBed07_SQ001_G19_R endosperm, 28 DPA... 58 5e-007
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 58 5e-007
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 58 5e-007
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 58 5e-007
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 58 5e-007
gb|CA010249.1|CA010249 HT11B14u HT Hordeum vulgare subsp. v... 58 5e-007
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 58 5e-007
gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA li... 54 8e-006
gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA li... 54 8e-006
gb|BM441944.2|BM441944 EBed07_SQ001_P23_R endosperm, 28 DPA... 54 8e-006
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 50 1e-004
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 50 1e-004
gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. v... 50 1e-004
gb|CV053661.1|CV053661 BNEL101g2 Barley EST endosperm libra... 50 1e-004
gb|AV914977.1|AV914977 AV914977 K. Sato unpublished cDNA li... 48 5e-004
gb|BU989213.1|BU989213 HF21B21r HF Hordeum vulgare subsp. v... 48 5e-004
gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA li... 46 0.002
gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgar... 46 0.002
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 44 0.007
gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Le... 38 0.46
gb|AL500107.1|AL500107 AL500107 Hordeum vulgare Barke etiol... 38 0.46
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 38 0.46
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 38 0.46
gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedl... 38 0.46
gb|AV914309.1|AV914309 AV914309 K. Sato unpublished cDNA li... 38 0.46
gb|BJ473739.1|BJ473739 BJ473739 K. Sato unpublished cDNA li... 38 0.46
gb|CA005552.1|CA005552 HU10A04u HU Hordeum vulgare subsp. v... 38 0.46
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 170 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 229
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 230 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 288
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 289 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 347
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 348 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 407
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 408 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 467
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 468 gaccaaaggcgaattcgaactggctctacatcgtccca 505
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaactt 566
||||||||||| |||||||| |||||||||||
Sbjct: 701 ggctacttcgcgtggtctcttctcgacaactt 732
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 1 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 60
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 61 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 119
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 120 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 178
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 179 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 238
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 239 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 298
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 299 gaccaaaggcgaattcgaactggctctacatcgtccca 336
Score = 69.9 bits (35), Expect = 1e-010
Identities = 99/119 (83%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 548 ggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtct 607
||||||| ||||||||||| |||||| | | || ||| |||||||||| || |||||||
Sbjct: 546 ggtctcttctcgacaactttgagtggatggccggctactcgtccaagttcggcatcgtct 605
Query: 608 acgtcgacttcagcacgcccaagct-cgaacgacaccccaaggcgtcagcctactggtt 665
|||| ||||||| || ||||| || || || |||||||||||||| |||||||||||
Sbjct: 606 acgtggacttcaacaaccccaacctgggatcggcaccccaaggcgtcggcctactggtt 664
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 395 tcataactgaaaacggaatggatcagcc 422
>gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 5', mRNA sequence
Length = 603
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 143 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 202
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 203 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 261
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 262 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 320
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 321 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 380
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 381 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 440
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 441 gaccaaaggcgaattcgaactggctctacatcgtccca 478
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 537 tcataactgaaaacggaatggatcagcc 564
>gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 5', mRNA sequence
Length = 641
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 182 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 241
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 242 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 300
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 301 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 359
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 360 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 419
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 420 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 479
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 480 gaccaaaggcgaattcgaactggctctacatcgtccca 517
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 578 tcataactgaaaacggaatggatcagcc 605
>gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 5', mRNA sequence
Length = 649
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 285 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 344
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 345 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 403
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 404 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 462
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 463 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 522
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 523 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 582
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 583 gaccaaaggcgaattcgaactggctctacatcgtccca 620
>gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 5', mRNA sequence
Length = 523
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 160 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 219
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 220 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 278
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 279 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 337
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 338 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 397
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 398 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 457
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 458 gaccaaaggcgaattcgaactggctctacatcgtccca 495
>gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_E07 5', mRNA sequence
Length = 715
Score = 194 bits (98), Expect = 3e-048
Identities = 280/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 298 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 357
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 358 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 416
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 417 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 475
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 476 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 535
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 536 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 595
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 596 gaccaaaggcgaattcgaactggctctacatcgtccca 633
>gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 5', mRNA sequence
Length = 604
Score = 186 bits (94), Expect = 8e-046
Identities = 279/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 101 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 160
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| ||||||||||||
Sbjct: 161 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccgtgtgaaagagag 219
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 220 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 278
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 279 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 338
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 339 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 398
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 399 gaccaaaggcgaattcgaactggctctacatcgtccca 436
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 495 tcataactgaaaacggaatggatcagcc 522
>gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
5-PRIME, mRNA sequence
Length = 644
Score = 186 bits (94), Expect = 8e-046
Identities = 279/338 (82%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 226 aactcaactgaggaccaagcagcagctcaaagagccagggacttccatgttggttggttt 285
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 286 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 344
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| ||||||||||||| ||||| || ||||
Sbjct: 345 gttgccc-aagttcactcctgctgaagctaaaatggtcaagggctccgcggactatattg 403
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
||||||| || ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 404 ggatcaaccagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 463
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| ||||| ||||| |||||||||||| |||| || || | || ||||| ||||| |
Sbjct: 464 ccagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattg 523
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
| ||| |||||||||| || ||||| ||||||||||||
Sbjct: 524 ggccaaaggcgaattcgaactggctctacatcgtccca 561
>gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 5', mRNA sequence
Length = 517
Score = 178 bits (90), Expect = 2e-043
Identities = 224/266 (84%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 220 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 279
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 280 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 338
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 339 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 397
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 398 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 457
Query: 242 ctagctactcagctgattggcaggtt 267
| ||||| ||||| ||||||||||||
Sbjct: 458 ccagctattcagccgattggcaggtt 483
>gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 5', mRNA sequence
Length = 597
Score = 178 bits (90), Expect = 2e-043
Identities = 224/266 (84%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 299 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 358
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 359 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 417
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 418 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 476
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 477 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 536
Query: 242 ctagctactcagctgattggcaggtt 267
| ||||| ||||| ||||||||||||
Sbjct: 537 ccagctattcagccgattggcaggtt 562
>gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 5', mRNA sequence
Length = 661
Score = 178 bits (90), Expect = 2e-043
Identities = 224/266 (84%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 347 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 406
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 407 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 465
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| ||||| ||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 466 gttgccc-aagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 524
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
|||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| |
Sbjct: 525 ggatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccga 584
Query: 242 ctagctactcagctgattggcaggtt 267
| ||||| ||||| ||||||||||||
Sbjct: 585 ccagctattcagccgattggcaggtt 610
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 145 bits (73), Expect = 3e-033
Identities = 218/265 (82%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
||||| || ||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 160 ataaacgggcattacccacagataatgcaagaccttgtgaaagagaggttgccc-aagtt 218
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| | ||||||| ||||||||||||| ||||| || ||||||||||| || ||
Sbjct: 219 cactcctgctgaagctaaaatggtcaagggctccgcggactatattgggatcaaccagta 278
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| |||||| | |||||||||||||| |||| ||||||| ||| || ||||| |||||
Sbjct: 279 cacagctagcctcatgaagggccagaaattgctgcagcagacgccgaccagctattcagc 338
Query: 255 tgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaa 314
|||||||||||| |||| || || | || ||||| ||||| || ||| |||||||
Sbjct: 339 cgattggcaggttacctatgcctttgagagaaatggcaagccgattgggccaaaggcgaa 398
Query: 315 ttcaaagtggctttacatcgtccca 339
||| || ||||| ||||||||||||
Sbjct: 399 ttcgaactggctctacatcgtccca 423
Score = 133 bits (67), Expect = 1e-029
Identities = 120/138 (86%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||| ||||
Sbjct: 619 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtncaag 678
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 679 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 738
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 739 gcctactggttcagagac 756
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 482 tcataactgaaaacggaatggatcagcc 509
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 145 bits (73), Expect = 3e-033
Identities = 218/265 (82%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
||||| || ||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 33 ataaacgggcattacccacagataatgcaagaccttgtgaaagagaggttgccc-aagtt 91
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| | ||||||| ||||||||||||| ||||| || ||||||||||| || ||
Sbjct: 92 cactcctgctgaagctaaaatggtcaagggctccgcggactatattgggatcaaccagta 151
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| |||||| | |||||||||||||| |||| ||||||| ||| || ||||| |||||
Sbjct: 152 cacagctagcctcatgaagggccagaaattgctgcagcagacgccgaccagctattcagc 211
Query: 255 tgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaa 314
|||||||||||| |||| || || | || ||||| ||||| || ||| |||||||
Sbjct: 212 cgattggcaggttacctatgcctttgagagaaatggcaagccgattgggccaaaggcgaa 271
Query: 315 ttcaaagtggctttacatcgtccca 339
||| || ||||| ||||||||||||
Sbjct: 272 ttcgaactggctctacatcgtccca 296
Score = 97.6 bits (49), Expect = 6e-019
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 492 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 551
Query: 595 tttggaatcgtctacgtcgacttca 619
|| || |||||||||||||||||||
Sbjct: 552 ttcggcatcgtctacgtcgacttca 576
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 355 tcataactgaaaacggaatggatcagcc 382
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 143 bits (72), Expect = 1e-032
Identities = 211/256 (82%), Gaps = 1/256 (0%)
Strand = Plus / Plus
Query: 84 cattatccacagataatgcaagatattgtgaaagagaggctgccccaagtttactccgga 143
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |
Sbjct: 16 cattacccacagataatgcaagaccttgtgaaagagaggttgccc-aagttcactcctgc 74
Query: 144 gcaagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctag 203
||||||| ||||||||||||| ||||| || ||||||||||| || ||||| |||||
Sbjct: 75 tgaagctaaaatggtcaagggctccgcggactatattgggatcaaccagtacacagctag 134
Query: 204 ctacgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggca 263
| | |||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||
Sbjct: 135 cctcatgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggca 194
Query: 264 ggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtg 323
|||| |||| || || | || ||||| ||||| || ||| |||||||||| || ||
Sbjct: 195 ggttacctatgcctttgagagaaatggcaagccgattgggccaaaggcgaattcgaactg 254
Query: 324 gctttacatcgtccca 339
||| ||||||||||||
Sbjct: 255 gctctacatcgtccca 270
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 466 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 525
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 526 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 585
Query: 655 gcctac 660
||||||
Sbjct: 586 gcctac 591
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 329 tcataactgaaaacggaatggatcagcc 356
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 309 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 368
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 369 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 428
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 429 gcctactggttcagagac 446
Score = 42.1 bits (21), Expect = 0.029
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 295 ccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| || ||| |||||||||| || ||||| ||||||||||||
Sbjct: 68 ccgattgggccaaaggcgaattcgaactggctctacatcgtccca 112
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 172 tcataactgaaaacggaatggatcagcc 199
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 243 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 302
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 303 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 362
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 363 gcctactggttcagagac 380
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 106 tcataactgaaaacggaatggatcagcc 133
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtccca 339
|||||||||| || ||||| ||||||||||||
Sbjct: 16 aggcgaattcgaactggctctacatcgtccca 47
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 311 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 252
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 251 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 192
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 191 gcctactggttcagagac 174
Score = 107 bits (54), Expect = 6e-022
Identities = 147/178 (82%)
Strand = Plus / Minus
Query: 162 gggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagggccagaa 221
|||||| ||||| || |||||||||||||| ||||| |||||| | |||||||||||||
Sbjct: 684 gggctccgcggactatattgggatcaatcagtacacagctagcctcatgaagggccagaa 625
Query: 222 actgctccagcagaagcctactagctactcagctgattggcaggttcaatatgttttaga 281
| |||| ||||||| ||| || ||||| ||||| |||||||||||| |||| || ||
Sbjct: 624 attgctgcagcagacgccgaccagctattcagccgattggcaggttacctatgcctttga 565
Query: 282 acggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
| || ||||| ||||| |||||| |||||||||| || ||||| ||||||||||||
Sbjct: 564 gagaaatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtccca 507
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 448 tcataactgaaaacggaatggatcagcc 421
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 221
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 220 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 161
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 160 gcctactggttcagagac 143
Score = 115 bits (58), Expect = 2e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 146 aagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagct 205
||||||| |||||| |||||| ||||| || |||||||||||||| ||||| ||||||
Sbjct: 669 aagctaaaatggtcatgggctccgcggactatattgggatcaatcagtacacagctagcc 610
Query: 206 acgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcagg 265
| |||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||
Sbjct: 609 tcatgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcagg 550
Query: 266 ttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggc 325
|| |||| || || | || ||||| ||||| |||||| |||||||||| || ||||
Sbjct: 549 ttacctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggc 490
Query: 326 tttacatcgtccca 339
| ||||||||||||
Sbjct: 489 tctacatcgtccca 476
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 417 tcataactgaaaacggaatggatcagcc 390
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 247
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 246 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 187
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 186 gcctactggttcagagac 169
Score = 109 bits (55), Expect = 2e-022
Identities = 151/183 (82%)
Strand = Plus / Minus
Query: 157 gtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagggc 216
|||| |||||| ||||| || |||||||||||||| ||||| |||||| | ||||||||
Sbjct: 684 gtcatgggctccgcggactatattgggatcaatcagtacacagctagcctcatgaagggc 625
Query: 217 cagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatatgtt 276
|||||| |||| ||||||| ||| || ||||| ||||| |||||||||||| ||||
Sbjct: 624 cagaaattgctgcagcagacgccgaccagctattcagccgattggcaggttacctatgcc 565
Query: 277 ttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtc 336
|| || | || ||||| ||||| |||||| |||||||||| || ||||| |||||||||
Sbjct: 564 tttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtc 505
Query: 337 cca 339
|||
Sbjct: 504 cca 502
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 443 tcataactgaaaacggaatggatcagcc 416
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 300 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 241
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 240 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 181
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 180 gcctactggttcagagac 163
Score = 63.9 bits (32), Expect = 8e-009
Identities = 108/132 (81%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 209 tgaagggccagaaactgctccagcagaagcct-actagctactcagctgattggcaggtt 267
|||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||||
Sbjct: 627 tgaagggccagaaattgctgcagcagacgccggaccagctattcagccgattggcaggtt 568
Query: 268 caatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctt 327
|||| || || | || ||||| ||||| |||||| |||||||||| || |||||
Sbjct: 567 acctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctc 508
Query: 328 tacatcgtccca 339
||||||||||||
Sbjct: 507 tacatcgtccca 496
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 437 tcataactgaaaacggaatggatcagcc 410
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 247
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 246 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 187
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 186 gcctactggttcagagac 169
Score = 56.0 bits (28), Expect = 2e-006
Identities = 104/128 (81%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 213 gggccagaaactgctccagcagaagcct-actagctactcagctgattggcaggttcaat 271
|||||||||| |||| ||||||| ||| || ||||| ||||| |||||||||||| |
Sbjct: 629 gggccagaaattgctgcagcagacgccggaccagctattcagccgattggcaggttacct 570
Query: 272 atgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttaca 331
||| || || | || ||||| ||||| |||||| |||||||||| || ||||| ||||
Sbjct: 569 atgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctctaca 510
Query: 332 tcgtccca 339
||||||||
Sbjct: 509 tcgtccca 502
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 443 tcataactgaaaacggaatggatcagcc 416
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 292 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 233
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 232 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 173
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 172 gcctactggttcagagac 155
Score = 99.6 bits (50), Expect = 1e-019
Identities = 153/186 (82%), Gaps = 1/186 (0%)
Strand = Plus / Minus
Query: 155 tggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagg 214
|||||| |||||| ||||| || |||||||||||||| ||||| |||||| | ||||||
Sbjct: 673 tggtcatgggctccgcggactatattgggatcaatcagtacacagctagcctcatgaagg 614
Query: 215 gccagaaactgctccagcagaagcc-tactagctactcagctgattggcaggttcaatat 273
|||||||| |||| ||||||| ||| || ||||| ||||| |||||||||||| |||
Sbjct: 613 gccagaaattgctgcagcagacgccggaccagctattcagccgattggcaggttacctat 554
Query: 274 gttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatc 333
| || || | || ||||| ||||| |||||| |||||||||| || ||||| ||||||
Sbjct: 553 gcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctctacatc 494
Query: 334 gtccca 339
||||||
Sbjct: 493 gtccca 488
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 429 tcataactgaaaacggaatggatcagcc 402
>gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 3', mRNA sequence
Length = 510
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 247
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 246 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 187
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 186 gcctactggttcagagac 169
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 445 tcataactgaaaacggaatggatcagcc 418
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 298 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 239
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 238 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 179
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 178 gcctactggttcagagac 161
Score = 71.9 bits (36), Expect = 3e-011
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 212 agggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaat 271
||||||||||| |||| ||||||| ||| || ||||| ||||| |||||||||||| |
Sbjct: 621 agggccagaaattgctgcagcagacgccgaccagctattcagccgattggcaggttacct 562
Query: 272 atgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttaca 331
||| || || | || ||||| ||||| |||||| |||||||||| || ||||| ||||
Sbjct: 561 atgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctctaca 502
Query: 332 tcgtccca 339
||||||||
Sbjct: 501 tcgtccca 494
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 435 tcataactgaaaacggaatggatcagcc 408
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 242
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 241 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 182
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 181 gcctactggttcagagac 164
Score = 101 bits (51), Expect = 4e-020
Identities = 160/195 (82%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 146 aagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagct 205
||||||| |||||| |||||| ||||| || |||||||||||||| ||||| ||||||
Sbjct: 691 aagctaaaatggtcatgggctccgcggactatattgggatcaatcagtacacagctagcc 632
Query: 206 acgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggca-g 264
| |||||||||||||| |||| ||||||| ||| || ||||| ||||| |||||||| |
Sbjct: 631 tcatgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcagg 572
Query: 265 gttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtgg 324
||| |||| || || | || ||||| ||||| |||||| |||||||||| || |||
Sbjct: 571 gttacctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactgg 512
Query: 325 ctttacatcgtccca 339
|| ||||||||||||
Sbjct: 511 ctctacatcgtccca 497
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 438 tcataactgaaaacggaatggatcagcc 411
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 279 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 220
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 219 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 160
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 159 gcctactggttcagagac 142
Score = 101 bits (51), Expect = 4e-020
Identities = 160/195 (82%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 146 aagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagct 205
||||||| |||||| |||||| ||||| || |||||||||||||| ||||| ||||||
Sbjct: 669 aagctaaaatggtcatgggctccgcggactatattgggatcaatcagtacacagctagcc 610
Query: 206 acgtgaagggccagaaactgctccagcagaagcc-tactagctactcagctgattggcag 264
| |||||||||||||| |||| ||||||| ||| || ||||| ||||| |||||||||
Sbjct: 609 tcatgaagggccagaaattgctgcagcagacgccggaccagctattcagccgattggcag 550
Query: 265 gttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtgg 324
||| |||| || || | || ||||| ||||| |||||| |||||||||| || |||
Sbjct: 549 gttacctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactgg 490
Query: 325 ctttacatcgtccca 339
|| ||||||||||||
Sbjct: 489 ctctacatcgtccca 475
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 416 tcataactgaaaacggaatggatcagcc 389
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 242
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 241 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 182
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 181 gcctactggttcagagac 164
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 289 ggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| ||||| |||||| |||||||||| || ||||| ||||||||||||
Sbjct: 547 ggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtccca 497
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 438 tcataactgaaaacggaatggatcagcc 411
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 307 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 248
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 247 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 188
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 187 gcctactggttcagagac 170
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 308 aggcgaattcaaagtggctttacatcgtccca 339
|||||||||| || ||||| ||||||||||||
Sbjct: 534 aggcgaattcgaactggctctacatcgtccca 503
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 444 tcataactgaaaacggaatggatcagcc 417
>gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 3', mRNA sequence
Length = 503
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 242
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 241 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 182
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 181 gcctactggttcagagac 164
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 438 tcataactgaaaacggaatggatcagcc 411
>gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O07 5', mRNA sequence
Length = 447
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 231 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 290
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 291 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 350
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 351 gcctactggttcagagac 368
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 1 gaccaaaggcgaattcgaactggctctacatcgtccca 38
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 234 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 293
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 294 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 353
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 354 gcctactggttcagagac 371
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||||||| || ||||| ||||||||||||
Sbjct: 1 gaccaaaggcgaattcgaactggctctacatcgtccca 38
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 97 tcataactgaaaacggaatggatcagcc 124
>gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085B05F1, mRNA sequence
Length = 343
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 151 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 210
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 211 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 270
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 271 gcctactggttcagagac 288
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 14 tcataactgaaaacggaatggatcagcc 41
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 221
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 220 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 161
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 160 gcctactggttcagagac 143
Score = 89.7 bits (45), Expect = 1e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 183 gatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcctac 242
||||||||| ||||| |||||| | |||||||||||||| |||| ||||||| ||| ||
Sbjct: 632 gatcaatcagtacacagctagcctcatgaagggccagaaattgctgcagcagacgccgac 573
Query: 243 tagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcgg 302
||||| ||||| |||||||||||| |||| || || | || ||||| ||||| ||
Sbjct: 572 cagctattcagccgattggcaggttacctatgcctttgagagaaatggcaagccgattgg 513
Query: 303 accacaggcgaattcaaagtggctttacatcgtccca 339
|||| |||||||||| || ||||| ||||||||||||
Sbjct: 512 accaaaggcgaattcgaactggctctacatcgtccca 476
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 417 tcataactgaaaacggaatggatcagcc 390
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 275 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 216
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 215 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 156
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 155 gcctactggttcagagac 138
Score = 109 bits (55), Expect = 2e-022
Identities = 151/183 (82%)
Strand = Plus / Minus
Query: 157 gtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagggc 216
|||| |||||| ||||| || |||||||||||||| ||||| |||||| | ||||||||
Sbjct: 653 gtcatgggctccgcggactatattgggatcaatcagtacacagctagcctcatgaagggc 594
Query: 217 cagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatatgtt 276
|||||| |||| ||||||| ||| || ||||| ||||| |||||||||||| ||||
Sbjct: 593 cagaaattgctgcagcagacgccgaccagctattcagccgattggcaggttacctatgcc 534
Query: 277 ttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtc 336
|| || | || ||||| ||||| |||||| |||||||||| || ||||| |||||||||
Sbjct: 533 tttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtc 474
Query: 337 cca 339
|||
Sbjct: 473 cca 471
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 412 tcataactgaaaacggaatggatcagcc 385
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 297 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 238
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 237 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 178
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 177 gcctactggttcagagac 160
Score = 115 bits (58), Expect = 2e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 146 aagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagct 205
||||||| |||||| |||||| ||||| || |||||||||||||| ||||| ||||||
Sbjct: 686 aagctaaaatggtcatgggctccgcggactatattgggatcaatcagtacacagctagcc 627
Query: 206 acgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcagg 265
| |||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||
Sbjct: 626 tcatgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcagg 567
Query: 266 ttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggc 325
|| |||| || || | || ||||| ||||| |||||| |||||||||| || ||||
Sbjct: 566 ttacctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggc 507
Query: 326 tttacatcgtccca 339
| ||||||||||||
Sbjct: 506 tctacatcgtccca 493
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 434 tcataactgaaaacggaatggatcagcc 407
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 221
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 220 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 161
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 160 gcctactggttcagagac 143
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 295 ccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| |||||| |||||||||| || ||||| ||||||||||||
Sbjct: 520 ccgattggaccaaaggcgaattcgaactggctctacatcgtccca 476
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 417 tcataactgaaaacggaatggatcagcc 390
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 221
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 220 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 161
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 160 gcctactggttcagagac 143
Score = 115 bits (58), Expect = 2e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 146 aagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagct 205
||||||| |||||| |||||| ||||| || |||||||||||||| ||||| ||||||
Sbjct: 669 aagctaaaatggtcatgggctccgcggactatattgggatcaatcagtacacagctagcc 610
Query: 206 acgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcagg 265
| |||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||
Sbjct: 609 tcatgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcagg 550
Query: 266 ttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggc 325
|| |||| || || | || ||||| ||||| |||||| |||||||||| || ||||
Sbjct: 549 ttacctatgcctttgagagaaatggcaagccgattggaccaaaggcgaattcgaactggc 490
Query: 326 tttacatcgtccca 339
| ||||||||||||
Sbjct: 489 tctacatcgtccca 476
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 417 tcataactgaaaacggaatggatcagcc 390
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 266 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 325
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 326 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 385
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 386 gcctactggttcagagac 403
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 289 ggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| ||||| |||||| |||||||||| || ||||| ||||||||||||
Sbjct: 20 ggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtccca 70
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 129 tcataactgaaaacggaatggatcagcc 156
>gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_B14 5', mRNA sequence
Length = 343
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 16 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 75
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 76 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 135
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 136 gcctactggttcagagac 153
>gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H06 5', mRNA sequence
Length = 433
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 109 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 168
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 169 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 228
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 229 gcctactggttcagagac 246
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 285 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 344
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 345 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 404
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 405 gcctactggttcagagac 422
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 289 ggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| ||||| || ||| |||||||||| || ||||| ||||||||||||
Sbjct: 39 ggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtccca 89
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 148 tcataactgaaaacggaatggatcagcc 175
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 242
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 241 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 182
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 181 gcctactggttcagagac 164
Score = 69.9 bits (35), Expect = 1e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 209 tgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttc 268
|||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||||
Sbjct: 627 tgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcaggtta 568
Query: 269 aatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggcttt 328
|||| || || | || ||||| ||||| || ||| |||||||||| || ||||| |
Sbjct: 567 cctatgcctttgagagaaatggcaagccgattgggccaaaggcgaattcgaactggctct 508
Query: 329 acatcgtccca 339
|||||||||||
Sbjct: 507 acatcgtccca 497
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 438 tcataactgaaaacggaatggatcagcc 411
>gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06M21
3-PRIME, mRNA sequence
Length = 403
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 325 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 266
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 265 ttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 206
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 205 gcctactggttcagagac 188
>gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06E22u 3', mRNA sequence
Length = 393
Score = 135 bits (68), Expect = 3e-030
Identities = 120/138 (86%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 346 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggntactcgtccaag 287
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||| ||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 286 ttcggcatcgtntacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 227
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 226 gcctactggttcagagac 209
>gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 5', mRNA sequence
Length = 640
Score = 133 bits (67), Expect = 1e-029
Identities = 171/203 (84%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 440 aactcaactgaagaccaagcagcagctcaaagagccagggacttccatgttggctggttt 499
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
| || || | | |||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 500 gtcgacccgctga-taaacgggcattacccacagataatgcaagaccttgtgaaagagag 558
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
| || |||||||| ||||| | ||||||| |||||| |||||| ||||| || ||||
Sbjct: 559 gttg-cccaagttcactcctgctgaagctaaaatggtcatgggctccgcggactatattg 617
Query: 182 ggatcaatcaatacaccgctagc 204
|||||||||| ||||| ||||||
Sbjct: 618 ggatcaatcagtacacagctagc 640
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 131 bits (66), Expect = 4e-029
Identities = 120/138 (86%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| |||||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 321 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 262
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
|| || ||||| ||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 261 ttcggcatcgtttacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtcg 202
Query: 655 gcctactggttcagagac 672
||||||||||||||||||
Sbjct: 201 gcctactggttcagagac 184
Score = 42.1 bits (21), Expect = 0.029
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 295 ccgatcggaccacaggcgaattcaaagtggctttacatcgtccca 339
||||| || ||| |||||||||| || ||||| ||||||||||||
Sbjct: 561 ccgattgggccaaaggcgaattcgaactggctctacatcgtccca 517
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 458 tcataactgaaaacggaatggatcagcc 431
>gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A13
3-PRIME, mRNA sequence
Length = 680
Score = 125 bits (63), Expect = 3e-027
Identities = 121/139 (87%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcc-tcgacaacttcgagtggcagtcaggttacacgtccaa 593
||||||||||| |||||||||| |||||||||| |||||| ||| || ||| |||||||
Sbjct: 333 ggctacttcgcgtggtctctccctcgacaactttgagtggatgtccggctactcgtccaa 274
Query: 594 gtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtc 653
||| || ||||||||||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 273 gttcggcatcgtctacgtcgacttcaacagccccaacctggatcggcaccccaaggcgtc 214
Query: 654 agcctactggttcagagac 672
||||||||||||||||||
Sbjct: 213 ggcctactggttcagagac 195
Score = 69.9 bits (35), Expect = 1e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 209 tgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttc 268
|||||||||||||| |||| ||||||| ||| || ||||| ||||| ||||||||||||
Sbjct: 659 tgaagggccagaaattgctgcagcagacgccgaccagctattcagccgattggcaggtta 600
Query: 269 aatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggcttt 328
|||| || || | || ||||| ||||| || ||| |||||||||| || ||||| |
Sbjct: 599 cctatgcctttgagagaaatggcaagccgattgggccaaaggcgaattcgaactggctct 540
Query: 329 acatcgtccca 339
|||||||||||
Sbjct: 539 acatcgtccca 529
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 tcataaccgagaacggaatggatcagcc 425
||||||| || |||||||||||||||||
Sbjct: 470 tcataactgaaaacggaatggatcagcc 443
>gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 5', mRNA sequence
Length = 547
Score = 123 bits (62), Expect = 1e-026
Identities = 116/134 (86%)
Strand = Plus / Plus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||||| ||||||| ||| || ||||| |||||||| |||||| |||||||||||
Sbjct: 65 ctacctcgccgagctgaagaaggcgatcgacgacggcgcgaacgtggtcggctacttcgc 124
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgt 605
||||| |||||||||||||||||||||| ||| || ||||| |||||||| || |||||
Sbjct: 125 ctggtccctcctcgacaacttcgagtggctgtcgggctacacctccaagttcggcatcgt 184
Query: 606 ctacgtcgacttca 619
|||||||||||||
Sbjct: 185 gtacgtcgacttca 198
>gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 3', mRNA sequence
Length = 581
Score = 123 bits (62), Expect = 1e-026
Identities = 116/134 (86%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||||| ||||||| ||| || ||||| |||||||| |||||| |||||||||||
Sbjct: 533 ctacctcgccgagctgaagaaggcgatcgacgacggcgcgaacgtggtcggctacttcgc 474
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgt 605
||||| |||||||||||||||||||||| ||| || ||||| |||||||| || |||||
Sbjct: 473 ctggtccctcctcgacaacttcgagtggctgtcgggctacacctccaagttcggcatcgt 414
Query: 606 ctacgtcgacttca 619
|||||||||||||
Sbjct: 413 gtacgtcgacttca 400
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,626
Number of Sequences: 312970
Number of extensions: 65626
Number of successful extensions: 17735
Number of sequences better than 0.5: 123
Number of HSP's better than 0.5 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17403
Number of HSP's gapped (non-prelim): 306
length of query: 851
length of database: 175,134,539
effective HSP length: 19
effective length of query: 832
effective length of database: 169,188,109
effective search space: 140764506688
effective search space used: 140764506688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)