BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 480 e-134
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 371 e-101
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 246 1e-063
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 228 3e-058
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 220 8e-056
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 220 8e-056
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 220 8e-056
gb|BG415637.1|BG415637 HVSMEk0007E11f Hordeum vulgare testa... 206 1e-051
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 190 7e-047
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 188 3e-046
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 167 1e-039
gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA li... 147 1e-033
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 84 1e-014
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 54 1e-005
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 2e-004
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 50 2e-004
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 50 2e-004
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 2e-004
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 50 2e-004
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 50 2e-004
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.003
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.003
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.003
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.003
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.003
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.003
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.003
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.003
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.003
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.003
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.003
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.003
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.003
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.003
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.003
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.003
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 44 0.010
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 44 0.010
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.010
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.041
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.16
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.16
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.16
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.16
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 480 bits (242), Expect = e-134
Identities = 479/558 (85%)
Strand = Plus / Minus
Query: 597 cttttgaccaaacgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaag 656
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 5482 cttttgaccagacgcaggaacaactggaaatgaaccatggccttggggtttaaactaaat 5423
Query: 657 accaagaggaggatgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaa 716
|||| || |||| ||||| || |||||||||||||| || | |||||| |||| |||
Sbjct: 5422 accattagcaggacaaaaagccctccaagcacagcccatgatacccaatataccagtaat 5363
Query: 717 gctgtacttcctccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaac 776
||||||||| | ||| || |||||||||||||||||||| | |||||||| |||||
Sbjct: 5362 gctgtactttcattgcttgctttcatgtggtaaacaactccatactggaaaataaaaaat 5303
Query: 777 ctcaggcttaatatggtttccagtatcctccctcgaatgctgtaaatatgttgcagttct 836
|| | || | ||| ||||||||||||||||| || | | ||| ||||||| |||||||
Sbjct: 5302 cttaaactaagtatagtttccagtatcctcccgcggaaggtgtgaatatgtgccagttct 5243
Query: 837 tcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgataaaac 896
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 5242 tcatcccaccaagcttcccagctttcttctcctttaaccccaataccacctcggtaaaaa 5183
Query: 897 agccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatccagatggg 956
||||| ||||||||||||||||||||||| || | ||| ||||||||||||||||| |||
Sbjct: 5182 agccagtttgtccagtctctgaaatcctcgacgaccttttgccattcaaatccagacggg 5123
Query: 957 ttaaataaatagggagcaaaaagccaagacaatgccataatccaactgcttatagagagt 1016
|| |||| || ||||||||||||||||| | ||||||| ||| || ||||| || |||
Sbjct: 5122 ttgaatacgtatggagcaaaaagccaagaaagagccataaaccagctacttatggaaagt 5063
Query: 1017 aaaatatagccaactgctccaccattgttaaacccatacgctaggaagatcaccaacaaa 1076
|| |||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||||| |
Sbjct: 5062 aagatatagccaattgctccactgttgttaaaaccataagctagaaagataaccaacaga 5003
Query: 1077 agtgcaacctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagca 1136
||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct: 5002 agtgcaacctccagccctttcacaaaatggcttcgggaataaagacggtaattctcagca 4943
Query: 1137 aacttgatatgtcgtacc 1154
||||| ||||| ||||||
Sbjct: 4942 aacttaatatgccgtacc 4925
Score = 220 bits (111), Expect = 8e-056
Identities = 228/267 (85%)
Strand = Plus / Minus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 5823 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 5764
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 5763 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 5704
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 5703 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 5644
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 5643 aacccagtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccag 5584
Query: 496 ttggcacaaatgctagaatggaagcaa 522
| |||||| ||||||| ||||||||||
Sbjct: 5583 taggcacatatgctaggatggaagcaa 5557
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 371 bits (187), Expect = e-101
Identities = 319/363 (87%)
Strand = Plus / Minus
Query: 792 gtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaagct 851
||||||||||||||||| || | | ||| ||||||| ||||||||| ||||||||||||
Sbjct: 466 gtttccagtatcctcccgcggaaggtgtgaatatgtgccagttcttcatcccaccaagct 407
Query: 852 tcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtccag 911
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct: 406 tcccagctttcttctcctttaaccccaataccacctcggtaaaaaagccagtttgtccag 347
Query: 912 tctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaataggga 971
|||||||||||||| || | ||| ||||||||||||||||| ||||| |||| || |||
Sbjct: 346 tctctgaaatcctcgacgaccttttgccattcaaatccagacgggttgaatacgtatgga 287
Query: 972 gcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagccaact 1031
|||||||||||||| | ||||||| ||| || ||||| || ||||| |||||||||| |
Sbjct: 286 gcaaaaagccaagaaagagccataaaccagctacttatggaaagtaagatatagccaatt 227
Query: 1032 gctccaccattgttaaacccatacgctaggaagatcaccaacaaaagtgcaacctccatc 1091
||||||| |||||||| ||||| ||||| ||||| ||||||| |||||||||||||| |
Sbjct: 226 gctccactgttgttaaaaccataagctagaaagataaccaacagaagtgcaacctccagc 167
Query: 1092 cctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcgt 1151
|||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| |||
Sbjct: 166 cctttcacaaaatggcttcgggaataaagacggtaattctcagcaaacttaatatgccgt 107
Query: 1152 acc 1154
|||
Sbjct: 106 acc 104
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 246 bits (124), Expect = 1e-063
Identities = 265/312 (84%)
Strand = Plus / Minus
Query: 597 cttttgaccaaacgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaag 656
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 312 cttttgaccagacgcaggaacaactggaaatgaaccatggccttggggtttaaactaaat 253
Query: 657 accaagaggaggatgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaa 716
|||| || |||| ||||| || |||||||||||||| || | |||||| |||| |||
Sbjct: 252 accattagcaggacaaaaagccctccaagcacagcccatgatacccaatataccagtaat 193
Query: 717 gctgtacttcctccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaac 776
||||||||| | ||| || |||||||||||||||||||| | |||||||| |||||
Sbjct: 192 gctgtactttcattgcttgctttcatgtggtaaacaactccatactggaaaataaaaaat 133
Query: 777 ctcaggcttaatatggtttccagtatcctccctcgaatgctgtaaatatgttgcagttct 836
|| | || | ||| ||||||||||||||||| || | | ||| ||||||| |||||||
Sbjct: 132 cttaaactaagtatagtttccagtatcctcccgcggaaggtgtgaatatgtgccagttct 73
Query: 837 tcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgataaaac 896
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 72 tcatcccaccaagcttcccagctttcttctcctttaaccccaataccacctcggtaaaaa 13
Query: 897 agccaatttgtc 908
||||| ||||||
Sbjct: 12 agccagtttgtc 1
Score = 208 bits (105), Expect = 3e-052
Identities = 222/261 (85%)
Strand = Plus / Minus
Query: 262 tgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaacagaagtc 321
||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct: 647 tgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaacagtagcc 588
Query: 322 gcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatgaaaatga 381
| |||||||| ||||| ||||| |||||||||||||| || |||||||| | |||||||
Sbjct: 587 gtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaaaaatga 528
Query: 382 ccatccccattccagcatcatagaggcgagctagggcacgaacagttttccacaaaccca 441
||| ||||| ||||||||||| |||||||| | | || || ||||||||||||||||
Sbjct: 527 tcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccacaaaccca 468
Query: 442 atttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccagttggca 501
| ||||||| | ||||||||||||| |||||||||| |||||||| ||||| ||||
Sbjct: 467 gtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccagtaggca 408
Query: 502 caaatgctagaatggaagcaa 522
|| ||||||| ||||||||||
Sbjct: 407 catatgctaggatggaagcaa 387
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 228 bits (115), Expect = 3e-058
Identities = 211/243 (86%)
Strand = Plus / Minus
Query: 912 tctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaataggga 971
|||||||||||||| || | ||| ||||||||||||||||| ||||| |||| || |||
Sbjct: 503 tctctgaaatcctcgacgaccttttgccattcaaatccagacgggttgaatacgtatgga 444
Query: 972 gcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagccaact 1031
|||||||||||||| | ||||||| ||| || ||||| || ||||| |||||||||| |
Sbjct: 443 gcaaaaagccaagaaagagccataaaccagctacttatggaaagtaagatatagccaatt 384
Query: 1032 gctccaccattgttaaacccatacgctaggaagatcaccaacaaaagtgcaacctccatc 1091
||||||| |||||||| ||||| ||||| ||||| ||||||| |||||||||||||| |
Sbjct: 383 gctccactgttgttaaaaccataagctagaaagataaccaacagaagtgcaacctccagc 324
Query: 1092 cctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcgt 1151
|||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| |||
Sbjct: 323 cctttcacaaaatggcttcgggaataaagacggtaattctcagcaaacttaatatgccgt 264
Query: 1152 acc 1154
|||
Sbjct: 263 acc 261
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 220 bits (111), Expect = 8e-056
Identities = 228/267 (85%)
Strand = Plus / Plus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 316 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 375
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 376 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 435
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 436 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 495
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 496 aacccagtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccag 555
Query: 496 ttggcacaaatgctagaatggaagcaa 522
| |||||| ||||||| ||||||||||
Sbjct: 556 taggcacatatgctaggatggaagcaa 582
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 220 bits (111), Expect = 8e-056
Identities = 228/267 (85%)
Strand = Plus / Plus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 229 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 288
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 289 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 348
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 349 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 408
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 409 aacccagtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccag 468
Query: 496 ttggcacaaatgctagaatggaagcaa 522
| |||||| ||||||| ||||||||||
Sbjct: 469 taggcacatatgctaggatggaagcaa 495
Score = 95.6 bits (48), Expect = 3e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 597 cttttgaccaaacgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaag 656
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 570 cttttgaccaaacgcaggaacaactggaaatgaaccatggccttggggtttaaactaaat 629
Query: 657 acca 660
||||
Sbjct: 630 acca 633
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 220 bits (111), Expect = 8e-056
Identities = 228/267 (85%)
Strand = Plus / Minus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 431 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 372
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 371 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 312
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 311 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 252
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 251 aacccagtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccag 192
Query: 496 ttggcacaaatgctagaatggaagcaa 522
| |||||| ||||||| ||||||||||
Sbjct: 191 taggcacatatgctaggatggaagcaa 165
Score = 87.7 bits (44), Expect = 8e-016
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 597 cttttgaccaaacgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaag 656
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 90 cttttgaccagacgcaggaacaactggaaatgaaccatggccttggggtttaaactaaat 31
Query: 657 acca 660
||||
Sbjct: 30 acca 27
>gb|BG415637.1|BG415637 HVSMEk0007E11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007E11f, mRNA sequence
Length = 645
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Minus
Query: 597 cttttgaccaaacgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaag 656
|||||||||| |||||||||||| |||||||| |||||||||||||||||||| | |||
Sbjct: 320 cttttgaccagacgcaggaacaactggaaatgaaccatggccttggggtttaagctaaat 261
Query: 657 accaagaggaggatgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaa 716
|||| || |||| || || || |||||| ||||||| || | |||||| |||| |||
Sbjct: 260 accattagcaggacaaatagccctccaagcgcagcccatgatacccaatataccagtaat 201
Query: 717 gctgtacttcctccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaac 776
||||||||| | ||| || ||||||||||||||||||| | |||| ||| |||||
Sbjct: 200 gctgtactttcattgcttgctctcatgtggtaaacaactccatactggataataaaaaat 141
Query: 777 ctcaggcttaatatggtttccagtatcctccctcgaatgctgtaaatatgttgcagttct 836
|| || || | ||| ||||||||||||||||| || | | ||| ||||||| ||||| |
Sbjct: 140 cttagactaagtatagtttccagtatcctcccgcgcaaggtgtgaatatgtgccagttgt 81
Query: 837 tcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgataaaac 896
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 80 tcatcccaacaagcttcccagctttcttctcctttaaccccaataccacctcggtacaaa 21
Query: 897 agccaatttgtccagtctct 916
||||| ||||||||||||||
Sbjct: 20 agccagtttgtccagtctct 1
Score = 40.1 bits (20), Expect = 0.16
Identities = 76/95 (80%)
Strand = Plus / Minus
Query: 276 agagatatctccaaacctctgctgaacgcctggttgaacagaagtcgcgtctggaaagtg 335
||||| |||||||||| | || ||| |||||||||||||| || || || || || |||
Sbjct: 641 agagagatctccaaacttttggtgatagcctggttgaacagtagccgtgtntgcaaggtg 582
Query: 336 gatatgaatggaaaccacgagcaaatggctatggg 370
|| ||||| | | ||| |||||| || ||||||||
Sbjct: 581 gagatgaaggaataccccgagcagatagctatggg 547
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 190 bits (96), Expect = 7e-047
Identities = 204/240 (85%)
Strand = Plus / Plus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 320 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 379
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 380 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 439
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 440 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 499
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 500 aacccagtctcttcacaattggtttccatgccacagcaatcgaaagaattccccatccag 559
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 188 bits (95), Expect = 3e-046
Identities = 224/267 (83%)
Strand = Plus / Plus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| | | | |||||||||||||||||||| |||||||||||||
Sbjct: 354 gattgttgccagccaggatgaaaaaaatctccaaacctctgctgaaagcctggttgaaca 413
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
|| || |||||||| | ||| ||||| ||||||||||||||||| |||||||| | |
Sbjct: 414 atagccgtgtctggaagggggaaatgaagggaaaccacgagcaaatagctatgggcacaa 473
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| ||| |||| | | || || ||||||||||
Sbjct: 474 aaatgatcattcccatgccagcatcatacaggggagccaacgagcgcactgttttccaca 533
Query: 436 aacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccccacccag 495
|||||| | ||||||| | ||||||||||||| |||||||||| |||||||| ||||
Sbjct: 534 aacccagtctcttcacaattggtttccatgccacagcaatcgaaaaaattccccatccag 593
Query: 496 ttggcacaaatgctagaatggaagcaa 522
| |||||| ||||||| ||||||||||
Sbjct: 594 taggcacatatgctaggatggaagcaa 620
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 167 bits (84), Expect = 1e-039
Identities = 168/196 (85%)
Strand = Plus / Minus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 207 gattgttgccagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaaca 148
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 147 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 88
Query: 376 aaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagttttccaca 435
|||||| ||| ||||| ||||||||||| |||||||| | | || || ||||||||||
Sbjct: 87 aaatgatcattcccatgccagcatcatacaggcgagccaacgagcgcactgttttccaca 28
Query: 436 aacccaatttcttcac 451
|||||| | |||||||
Sbjct: 27 aacccagtctcttcac 12
>gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14l04 3', mRNA sequence
Length = 478
Score = 147 bits (74), Expect = 1e-033
Identities = 136/157 (86%)
Strand = Plus / Plus
Query: 256 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 315
||||||||||||| ||||| ||||| |||| ||||||||||||||| |||||||||||||
Sbjct: 292 gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
Query: 316 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 375
| || || |||||||| ||||| ||||| |||||||||||||| || |||||||| | |
Sbjct: 352 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
Query: 376 aaatgaccatccccattccagcatcatagaggcgagc 412
|||||| ||| ||||| ||||||||||| ||| ||||
Sbjct: 412 aaatgatcattcccatgccagcatcatacaggngagc 448
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd19k01, mRNA sequence
Length = 644
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcgta 1152
||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| ||||
Sbjct: 644 ctttcacaaaatggcttcgggaataaagacggtaattctcagcaaacttaatatgccgta 585
Query: 1153 cc 1154
||
Sbjct: 584 cc 583
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1148 tcgtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||||
Sbjct: 339 tcgtacctgcccgggcggccgctcgaa 365
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-159 similar
to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgctcgaa 438
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 291 cctctgctgaacgcctggttgaacagaagtcgcgtctggaa 331
||||| |||||||||||||||||||| | |||||||||||
Sbjct: 164 cctctactgaacgcctggttgaacagcatccgcgtctggaa 124
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 291 cctctgctgaacgcctggttgaacagaagtcgcgtctggaa 331
||||| |||||||||||||||||||| | |||||||||||
Sbjct: 271 cctctactgaacgcctggttgaacagcatccgcgtctggaa 231
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1080 gcaacctccatccctttcacaaaatggcttcgagaata 1117
|||||||| | | |||||||||| ||||||||||||||
Sbjct: 285 gcaacctcaagcgctttcacaaagtggcttcgagaata 248
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 207 acaatcttctgccactcaaatccaga 182
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgct 1170
|||||||||||||||||||||
Sbjct: 334 gtacctgcccgggcggccgct 354
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 271 gtacctgcccgggcggccgc 290
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-108, mRNA
sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 328 gtacctgcccgggcggccgc 347
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-21 similar to
A. thaliana AtRer1A, Accession No. AY044321, mRNA
sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,621
Number of Sequences: 312970
Number of extensions: 107621
Number of successful extensions: 29737
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29659
Number of HSP's gapped (non-prelim): 65
length of query: 1174
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1155
effective length of database: 169,188,109
effective search space: 195412265895
effective search space used: 195412265895
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)