BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF627578.2|BF627578 HVSMEb0005D17f Hordeum vulgare seedl... 430 e-119
gb|AV921006.1|AV921006 AV921006 K. Sato unpublished cDNA li... 400 e-110
gb|AV919157.1|AV919157 AV919157 K. Sato unpublished cDNA li... 392 e-108
gb|BF258204.2|BF258204 HVSMEf0015B12f Hordeum vulgare seedl... 383 e-105
gb|BM816655.1|BM816655 HB01A07_T3.ab1 HB Hordeum vulgare su... 373 e-102
gb|CA002810.1|CA002810 HS08J14r HS Hordeum vulgare subsp. v... 355 1e-096
gb|BJ544684.1|BJ544684 BJ544684 K. Sato unpublished cDNA li... 353 6e-096
gb|BM443008.2|BM443008 EBro02_SQ002_C21_R root, 3 week, hyd... 351 2e-095
gb|BU972745.1|BU972745 HB22J12r BC Hordeum vulgare subsp. v... 351 2e-095
gb|BU996667.1|BU996667 HM14F14r HM Hordeum vulgare subsp. v... 351 2e-095
gb|BF253522.3|BF253522 HVSMEf0001C17f Hordeum vulgare seedl... 343 5e-093
gb|BJ546337.1|BJ546337 BJ546337 K. Sato unpublished cDNA li... 331 2e-089
gb|BJ548879.1|BJ548879 BJ548879 K. Sato unpublished cDNA li... 329 8e-089
gb|BI958920.1|BI958920 HVSMEn0017D23f Hordeum vulgare rachi... 325 1e-087
gb|BU970828.1|BU970828 HB15M21r BC Hordeum vulgare subsp. v... 321 2e-086
gb|BJ546155.1|BJ546155 BJ546155 K. Sato unpublished cDNA li... 307 3e-082
gb|AV911559.1|AV911559 AV911559 K. Sato unpublished cDNA li... 303 5e-081
gb|BQ757608.1|BQ757608 EBem10_SQ004_K13_R embryo, 2 Day ger... 295 1e-078
gb|AL510717.1|AL510717 AL510717 Hordeum vulgare Barke devel... 293 5e-078
gb|CV062330.1|CV062330 BNEL78h1 Barley EST endosperm librar... 291 2e-077
gb|CV063225.1|CV063225 BNEL88a10 Barley EST endosperm libra... 291 2e-077
gb|AV914847.1|AV914847 AV914847 K. Sato unpublished cDNA li... 285 1e-075
gb|BF256948.2|BF256948 HVSMEf0011H06f Hordeum vulgare seedl... 280 7e-074
gb|BF260520.3|BF260520 HVSMEf0022D16f Hordeum vulgare seedl... 268 3e-070
gb|BJ549915.1|BJ549915 BJ549915 K. Sato unpublished cDNA li... 250 6e-065
gb|AV909659.1|AV909659 AV909659 K. Sato unpublished cDNA li... 248 2e-064
gb|AJ463159.1|AJ463159 AJ463159 S00002 Hordeum vulgare subs... 244 4e-063
gb|AJ463158.1|AJ463158 AJ463158 S00002 Hordeum vulgare subs... 240 6e-062
gb|BE215685.3|BE215685 HV_CEb0007P22f Hordeum vulgare seedl... 238 2e-061
gb|AL502423.1|AL502423 AL502423 Hordeum vulgare Barke roots... 224 3e-057
gb|BQ471753.1|BQ471753 HV03F22r HV Hordeum vulgare subsp. v... 218 2e-055
gb|BI960078.1|BI960078 HVSMEn0023C04f Hordeum vulgare rachi... 214 3e-054
gb|BJ449493.1|BJ449493 BJ449493 K. Sato unpublished cDNA li... 212 1e-053
gb|BF259502.2|BF259502 HVSMEf0019I02f Hordeum vulgare seedl... 208 2e-052
gb|BU969174.1|BU969174 HB10M08r BC Hordeum vulgare subsp. v... 208 2e-052
gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA li... 198 2e-049
gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA li... 196 8e-049
gb|BU988947.1|BU988947 HF19D20r HF Hordeum vulgare subsp. v... 196 8e-049
gb|AJ436651.1|AJ436651 AJ436651 S00002 Hordeum vulgare subs... 178 2e-043
gb|BE455469.2|BE455469 HVSMEg0017F01f Hordeum vulgare pre-a... 174 3e-042
gb|BQ757060.1|BQ757060 EBem10_SQ002_K18_R embryo, 2 Day ger... 170 5e-041
gb|BG301258.2|BG301258 HVSMEb0020E14f Hordeum vulgare seedl... 168 2e-040
gb|BG418221.1|BG418221 HVSMEk0021P03f Hordeum vulgare testa... 163 1e-038
gb|BI947157.1|BI947157 HVSMEl0003P09f Hordeum vulgare spike... 161 4e-038
gb|BM370165.2|BM370165 EBro08_SQ003_D02_R root, 3 week, dro... 153 1e-035
gb|BJ456934.1|BJ456934 BJ456934 K. Sato unpublished cDNA li... 149 2e-034
gb|BQ756196.1|BQ756196 EBem05_SQ004_C06_R embryo, 14 DPA, n... 149 2e-034
gb|BJ549498.1|BJ549498 BJ549498 K. Sato unpublished cDNA li... 137 6e-031
gb|BE519855.1|BE519855 HV_CEb0021H15f Hordeum vulgare seedl... 135 2e-030
gb|BF620279.2|BF620279 HVSMEc0019E20f Hordeum vulgare seedl... 133 1e-029
gb|BE060857.3|BE060857 HVSMEg0013J21f Hordeum vulgare pre-a... 133 1e-029
gb|BJ544855.1|BJ544855 BJ544855 K. Sato unpublished cDNA li... 133 1e-029
gb|CB877081.1|CB877081 HP03I02T HP Hordeum vulgare subsp. v... 129 2e-028
gb|CB879741.1|CB879741 HP03I02w HP Hordeum vulgare subsp. v... 123 9e-027
gb|BI951009.1|BI951009 HVSMEl0024A04f Hordeum vulgare spike... 117 6e-025
gb|BU972342.1|BU972342 HB21G01r BC Hordeum vulgare subsp. v... 111 4e-023
gb|BJ547041.1|BJ547041 BJ547041 K. Sato unpublished cDNA li... 111 4e-023
gb|BM442828.2|BM442828 EBro02_SQ001_H02_R root, 3 week, hyd... 98 5e-019
gb|BG416704.2|BG416704 HVSMEk0014D01f Hordeum vulgare testa... 94 8e-018
gb|BQ763370.1|BQ763370 EBro02_SQ008_K01_R root, 3 week, hyd... 88 5e-016
gb|BM443269.2|BM443269 EBro02_SQ003_F16_R root, 3 week, hyd... 76 2e-012
gb|BU979918.1|BU979918 HA17M18r HA Hordeum vulgare subsp. v... 72 3e-011
gb|BJ547904.1|BJ547904 BJ547904 K. Sato unpublished cDNA li... 72 3e-011
gb|CB877082.1|CB877082 HP03I03T HP Hordeum vulgare subsp. v... 72 3e-011
gb|BU982278.1|BU982278 HA26A18r HA Hordeum vulgare subsp. v... 56 2e-006
gb|AJ462401.1|AJ462401 AJ462401 S00002 Hordeum vulgare subs... 54 7e-006
gb|AV909217.1|AV909217 AV909217 K. Sato unpublished cDNA li... 52 3e-005
gb|AV911101.1|AV911101 AV911101 K. Sato unpublished cDNA li... 52 3e-005
gb|AV915820.1|AV915820 AV915820 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ477449.1|BJ477449 BJ477449 K. Sato unpublished cDNA li... 52 3e-005
gb|CD662339.1|CD662339 UCRHV18_01dc12_b1 Drought-stressed D... 46 0.002
gb|AV909708.1|AV909708 AV909708 K. Sato unpublished cDNA li... 44 0.007
gb|BF256552.2|BF256552 HVSMEf0010F04f Hordeum vulgare seedl... 42 0.028
gb|BF258305.2|BF258305 HVSMEf0015F24f Hordeum vulgare seedl... 42 0.028
gb|BE231175.2|BE231175 HVSMEg0017G06f Hordeum vulgare pre-a... 42 0.028
gb|BF254210.3|BF254210 HVSMEf0003F07f Hordeum vulgare seedl... 42 0.028
gb|AV910273.1|AV910273 AV910273 K. Sato unpublished cDNA li... 42 0.028
gb|AV913541.1|AV913541 AV913541 K. Sato unpublished cDNA li... 42 0.028
gb|AV913569.1|AV913569 AV913569 K. Sato unpublished cDNA li... 42 0.028
gb|AV913736.1|AV913736 AV913736 K. Sato unpublished cDNA li... 42 0.028
gb|AV915529.1|AV915529 AV915529 K. Sato unpublished cDNA li... 42 0.028
gb|AV916097.1|AV916097 AV916097 K. Sato unpublished cDNA li... 42 0.028
gb|AV917183.1|AV917183 AV917183 K. Sato unpublished cDNA li... 42 0.028
gb|AV919156.1|AV919156 AV919156 K. Sato unpublished cDNA li... 42 0.028
gb|AV921718.1|AV921718 AV921718 K. Sato unpublished cDNA li... 42 0.028
gb|BM816179.1|BM816179 HC02E01_T3.ab1 HC Hordeum vulgare su... 42 0.028
gb|BJ454281.1|BJ454281 BJ454281 K. Sato unpublished cDNA li... 42 0.028
gb|BJ462617.1|BJ462617 BJ462617 K. Sato unpublished cDNA li... 42 0.028
gb|BJ463235.1|BJ463235 BJ463235 K. Sato unpublished cDNA li... 42 0.028
gb|BJ463352.1|BJ463352 BJ463352 K. Sato unpublished cDNA li... 42 0.028
gb|BJ463694.1|BJ463694 BJ463694 K. Sato unpublished cDNA li... 42 0.028
gb|BJ463970.1|BJ463970 BJ463970 K. Sato unpublished cDNA li... 42 0.028
gb|BJ464470.1|BJ464470 BJ464470 K. Sato unpublished cDNA li... 42 0.028
gb|BJ464957.1|BJ464957 BJ464957 K. Sato unpublished cDNA li... 42 0.028
gb|BJ465124.1|BJ465124 BJ465124 K. Sato unpublished cDNA li... 42 0.028
gb|BQ658243.1|BQ658243 HB09P05w BC Hordeum vulgare subsp. v... 42 0.028
gb|BM372796.2|BM372796 EBpi05_SQ003_P06_R pistil, 8 DPA, no... 42 0.028
gb|BM096945.2|BM096945 EBpi07_SQ001_O03_R pistil, 12 DPA, n... 42 0.028
gb|BM443026.2|BM443026 EBro02_SQ002_D20_R root, 3 week, hyd... 42 0.028
gb|BM370094.2|BM370094 EBro08_SQ002_P14_R root, 3 week, dro... 42 0.028
gb|BQ761066.1|BQ761066 EBro04_SQ002_P23_R root, 3 week, sal... 42 0.028
gb|BQ762329.1|BQ762329 EBro01_SQ005_C16_R root, 3 week, hyd... 42 0.028
gb|BQ767952.1|BQ767952 EBro08_SQ010_E07_R root, 3 week, dro... 42 0.028
gb|BU973256.1|BU973256 HB24E24r BC Hordeum vulgare subsp. v... 42 0.028
gb|BU994833.1|BU994833 HM08F16r HM Hordeum vulgare subsp. v... 42 0.028
gb|CA028466.1|CA028466 HZ62B03r HZ Hordeum vulgare subsp. v... 42 0.028
gb|CA017402.1|CA017402 HV05B15r HV Hordeum vulgare subsp. v... 40 0.11
gb|BF260651.2|BF260651 HVSMEf0022J07f Hordeum vulgare seedl... 38 0.43
gb|BI946633.1|BI946633 HVSMEl0001F12f Hordeum vulgare spike... 38 0.43
gb|AV914047.1|AV914047 AV914047 K. Sato unpublished cDNA li... 38 0.43
gb|AV917603.1|AV917603 AV917603 K. Sato unpublished cDNA li... 38 0.43
gb|AV918871.1|AV918871 AV918871 K. Sato unpublished cDNA li... 38 0.43
gb|AV919076.1|AV919076 AV919076 K. Sato unpublished cDNA li... 38 0.43
gb|AV919513.1|AV919513 AV919513 K. Sato unpublished cDNA li... 38 0.43
gb|AV919679.1|AV919679 AV919679 K. Sato unpublished cDNA li... 38 0.43
gb|AV921216.1|AV921216 AV921216 K. Sato unpublished cDNA li... 38 0.43
gb|AV936421.1|AV936421 AV936421 K. Sato unpublished cDNA li... 38 0.43
gb|BJ450393.1|BJ450393 BJ450393 K. Sato unpublished cDNA li... 38 0.43
gb|BJ464032.1|BJ464032 BJ464032 K. Sato unpublished cDNA li... 38 0.43
gb|BJ464187.1|BJ464187 BJ464187 K. Sato unpublished cDNA li... 38 0.43
gb|BJ466237.1|BJ466237 BJ466237 K. Sato unpublished cDNA li... 38 0.43
gb|BJ466302.1|BJ466302 BJ466302 K. Sato unpublished cDNA li... 38 0.43
gb|BJ467706.1|BJ467706 BJ467706 K. Sato unpublished cDNA li... 38 0.43
gb|BJ467865.1|BJ467865 BJ467865 K. Sato unpublished cDNA li... 38 0.43
gb|BQ472535.1|BQ472535 HB09E05T BC Hordeum vulgare subsp. v... 38 0.43
gb|BQ658402.1|BQ658402 HB09E05w BC Hordeum vulgare subsp. v... 38 0.43
gb|BM100357.2|BM100357 EBma01_SQ001_P14_R maternal, 4 DPA, ... 38 0.43
gb|BQ759253.1|BQ759253 EBpi01_SQ003_D23_R pistil, 1 DPA, no... 38 0.43
gb|BQ763954.1|BQ763954 EBro03_SQ005_J20_R root, 3 week, wat... 38 0.43
>gb|BF627578.2|BF627578 HVSMEb0005D17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005D17f, mRNA sequence
Length = 771
Score = 430 bits (217), Expect = e-119
Identities = 411/475 (86%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 154 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 213
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 214 cctatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 273
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 274 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 333
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 334 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 393
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 394 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 453
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 454 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 513
Query: 370 gcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctcc 429
||||||| || ||| | | |||||||||| |||||||||||||| |||||| ||||||
Sbjct: 514 gcaagccagatatcaccagagccaaggagcaacttgggtgggagcccaagatcgccctcc 573
Query: 430 gcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
| || ||||| ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct: 574 gtgacggcctcccccttatggttaccgacttccgcaagcggatattcggcgacca 628
>gb|AV921006.1|AV921006 AV921006 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h19 3', mRNA sequence
Length = 705
Score = 400 bits (202), Expect = e-110
Identities = 390/454 (85%), Gaps = 1/454 (0%)
Strand = Plus / Minus
Query: 32 gtgccaaccttgag-ttangatcgcacgtatcttcaacacatatggccctcgcatgtgca 90
|||||||| ||||| ||| ||| || || ||||| ||||| |||||||| ||||||||||
Sbjct: 691 gtgccaacnttgaggttaggattgctcggatctttaacacctatggcccacgcatgtgca 632
Query: 91 ttgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangagccattga 150
|||||||||||||||||||||| | | ||||||||||| || | ||| |||| ||||
Sbjct: 631 ttgacgatggccgtgttgtcagcaactttgttgctcaggcgctaaggaagnagcctttga 572
Query: 151 cggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagg 210
||||||| || ||||| ||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 571 cggtttacggcgatggcaagcagaccaggagtttccaatacgtttctgatttggttgagg 512
Query: 211 gtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcg 270
| |||||| |||||||||||| || || | || ||||| ||| ||||||||||||| |
Sbjct: 511 ggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtg 452
Query: 271 agttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgga 330
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 451 agttcaccatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcgga 392
Query: 331 tcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtg 390
||||||||||| |||||||||| |||||||| |||||||||||||| || ||| | |
Sbjct: 391 tcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaagg 332
Query: 391 ccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatgg 450
||||||||| |||||||||||||| |||||| ||||||| || ||||| ||||||||||
Sbjct: 331 ccaaggagcaacttgggtgggagcccaagatcgccctccgtgacggcctccccctcatgg 272
Query: 451 tcaccgacttccgcaagcgcatcttcggcgacca 484
| ||||||||||||||||| || |||||||||||
Sbjct: 271 ttaccgacttccgcaagcggatattcggcgacca 238
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 174 ttttggtggcctgcttctagct 153
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 79 taccttggttgttggtgtaatgttattcttt 49
>gb|AV919157.1|AV919157 AV919157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m11 3', mRNA sequence
Length = 678
Score = 392 bits (198), Expect = e-108
Identities = 358/413 (86%)
Strand = Plus / Minus
Query: 72 tatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggca 131
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 649 tatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcaggcg 590
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|| | ||| ||||| ||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 589 ctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatac 530
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
||||||||| |||| ||||| |||||| |||||||||||| || || | || |||||
Sbjct: 529 gtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattc 470
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 469 aacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacacc 410
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
|||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 409 atcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgc 350
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| || ||| | |||||||||| |||||||||||||| |||||| |||||||
Sbjct: 349 aagccagatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgt 290
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
|| ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 289 gacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 237
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 173 ttttggtggcctgcttctagct 152
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 78 taccttggttgttggtgtaatgttattcttt 48
>gb|BF258204.2|BF258204 HVSMEf0015B12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015B12f, mRNA sequence
Length = 749
Score = 383 bits (193), Expect = e-105
Identities = 350/404 (86%)
Strand = Plus / Plus
Query: 81 cgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaan 140
|||||||||||||||||||||||||||||||| | | ||||||||||| || | |||
Sbjct: 1 cgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcaggcgctaaggaag 60
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 61 gagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtttctgat 120
Query: 201 ctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggc 260
|||| ||||| |||||| |||||||||||| || || | || ||||| ||| |||||
Sbjct: 121 ttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggc 180
Query: 261 aaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccc 320
|||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 181 aaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcgacccg 240
Query: 321 aacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgac 380
||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| ||
Sbjct: 241 aacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagat 300
Query: 381 atcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcctt 440
||| | |||||||||| |||||||||||||| |||||| ||||||| || |||||
Sbjct: 301 atcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgacggcctc 360
Query: 441 cccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 361 cccctcatggttaccgacttccgcaagcggatattcggcgacca 404
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 468 ttttggtggcctgcttctagct 489
>gb|BM816655.1|BM816655 HB01A07_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01A07_T3.ab1 similar to dTDP-glucose 4,6-dehydratase,,
mRNA sequence
Length = 859
Score = 373 bits (188), Expect = e-102
Identities = 395/461 (85%), Gaps = 4/461 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 262 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 321
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 322 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 381
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 382 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 441
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | | ||||
Sbjct: 442 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgngccat 501
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 502 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 561
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 562 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 621
Query: 370 gcaagcccgacatcggccgtgcc-aaggagctccttgggtgggagccaaagatccccct- 427
||||||| || ||| | ||| ||||||| | | ||||||||||| |||||| ||||
Sbjct: 622 gcaagccagatatcaccaaggccaaaggagcacttcgggtgggagcccaagatcgccctc 681
Query: 428 ccgcgagggccttcccctcatggtcaccgacttccgcaagc 468
||| || |||||||||||||||| ||||||||||||||||
Sbjct: 682 ccgtgacggccttcccctcatgggtaccgacttccgcaagc 722
>gb|CA002810.1|CA002810 HS08J14r HS Hordeum vulgare subsp. vulgare cDNA clone HS08J14
5-PRIME, mRNA sequence
Length = 466
Score = 355 bits (179), Expect = 1e-096
Identities = 355/413 (85%), Gaps = 2/413 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 54 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 113
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 114 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 173
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 174 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 233
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 234 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 293
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 294 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 353
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 354 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 413
Query: 370 gcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatc 422
||||||| || ||| | |||||||||| || ||||||||||| ||||||
Sbjct: 414 gcaagccagatatcaccaaggccaaggagcaactcgggtgggagcccaagatc 466
>gb|BJ544684.1|BJ544684 BJ544684 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34f15 5', mRNA sequence
Length = 540
Score = 353 bits (178), Expect = 6e-096
Identities = 348/404 (86%), Gaps = 2/404 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 137 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 196
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 197 cctatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 256
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 257 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 316
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 317 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 376
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 377 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 436
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 437 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 496
Query: 370 gcaagcccgacatcggccgtgccaaggagctccttgggtgggag 413
||||||| || ||| | |||||||||| ||||||||||||
Sbjct: 497 gcaagccagatatcaccaaggccaaggagcaacttgggtgggag 540
>gb|BM443008.2|BM443008 EBro02_SQ002_C21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_C21 5', mRNA sequence
Length = 465
Score = 351 bits (177), Expect = 2e-095
Identities = 320/367 (87%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 90 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 149
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 150 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 209
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 210 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 269
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 270 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 329
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 330 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 389
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 390 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 449
Query: 370 gcaagcc 376
|||||||
Sbjct: 450 gcaagcc 456
>gb|BU972745.1|BU972745 HB22J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB22J12
5-PRIME, mRNA sequence
Length = 619
Score = 351 bits (177), Expect = 2e-095
Identities = 320/367 (87%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 214 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 273
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 274 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 333
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 334 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 393
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 394 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 453
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 454 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 513
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 514 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 573
Query: 370 gcaagcc 376
|||||||
Sbjct: 574 gcaagcc 580
>gb|BU996667.1|BU996667 HM14F14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14F14
5-PRIME, mRNA sequence
Length = 604
Score = 351 bits (177), Expect = 2e-095
Identities = 320/367 (87%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 203 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 262
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 263 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 322
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 323 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 382
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 383 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 442
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 443 tcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggaca 502
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
|||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 503 ccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagc 562
Query: 370 gcaagcc 376
|||||||
Sbjct: 563 gcaagcc 569
>gb|BF253522.3|BF253522 HVSMEf0001C17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001C17f, mRNA sequence
Length = 850
Score = 343 bits (173), Expect = 5e-093
Identities = 316/365 (86%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||||||||| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 8 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 67
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||||||||| ||||||||| |||| ||||| |||||| |||||||||||| || ||
Sbjct: 68 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 127
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
| || ||||| ||| ||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct: 128 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 187
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgac 359
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 188 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 247
Query: 360 ccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaag 419
|| |||||||||||||| || ||| | |||||||||| |||||||||||||| |||
Sbjct: 248 ccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaag 307
Query: 420 atccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggc 479
||| ||||||| || ||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct: 308 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 367
Query: 480 gacca 484
|||||
Sbjct: 368 gacca 372
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 436 ttttggtggcctgcttctagct 457
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 532 taccttggttggtggtgtaatgttattcttt 562
>gb|BJ546337.1|BJ546337 BJ546337 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39a18 3', mRNA sequence
Length = 514
Score = 331 bits (167), Expect = 2e-089
Identities = 302/348 (86%)
Strand = Plus / Minus
Query: 137 gaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttc 196
||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||
Sbjct: 510 gaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtttc 451
Query: 197 tgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacct 256
|||| |||| ||||| |||||| |||||||||||| || || | || ||||| ||| |
Sbjct: 450 tgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaactt 391
Query: 257 gggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcga 316
|||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 390 gggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcga 331
Query: 317 ccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcc 376
||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 330 cccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagcc 271
Query: 377 cgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgaggg 436
|| ||| | |||||||||| |||||||||||||| |||||| ||||||| || ||
Sbjct: 270 agatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgacgg 211
Query: 437 ccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 210 cctccccctcatggttaccgacttccgcaagcggatattcggcgacca 163
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 99 ttttggtggcctgcttctagct 78
>gb|BJ548879.1|BJ548879 BJ548879 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37k14 3', mRNA sequence
Length = 618
Score = 329 bits (166), Expect = 8e-089
Identities = 316/366 (86%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 120 gttgctcaggcactgangaangagccattgacggttt-atggtgatggaaagcaaaccag 178
||||||||||| || | ||| ||||| |||||||||| | || ||||| ||||| |||||
Sbjct: 600 gttgctcaggcgctaaggaaggagcctttgacggttttacggcgatggcaagcagaccag 541
Query: 179 gagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagca 238
|||||||||||| ||||||||| |||| ||||| |||||| |||||||||||| || ||
Sbjct: 540 gagtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatca 481
Query: 239 tgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangt 298
| || ||||| ||| ||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 480 cattgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggt 421
Query: 299 tgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacga 358
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||
Sbjct: 420 tgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacga 361
Query: 359 cccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaa 418
||| |||||||||||||| || ||| | |||||||||| |||||||||||||| ||
Sbjct: 360 cccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaa 301
Query: 419 gatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcgg 478
|||| ||||||| || ||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct: 300 gatcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcgg 241
Query: 479 cgacca 484
||||||
Sbjct: 240 cgacca 235
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 171 ttttggtggcctgcttctagct 150
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 78 taccttggttgttggtgtaatgttattcttt 48
>gb|BI958920.1|BI958920 HVSMEn0017D23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017D23f, mRNA sequence
Length = 648
Score = 325 bits (164), Expect = 1e-087
Identities = 294/338 (86%)
Strand = Plus / Minus
Query: 147 ttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtc 206
||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 630 ttgacggtttagggcgatggcaagcagaccaggagtttccaatacgtttctgatttggtt 571
Query: 207 gagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaacccc 266
||||| |||||| |||||||||||| || || | || ||||| ||| |||||||||||
Sbjct: 570 gaggggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggcaacccc 511
Query: 267 ggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgca 326
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct: 510 ggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcg 451
Query: 327 cggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggc 386
||||||||||||||| |||||||||| |||||||| |||||||||||||| || ||| |
Sbjct: 450 cggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcacc 391
Query: 387 cgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctc 446
|||||||||| |||||||||||||| |||||| ||||||| || ||||| ||||||
Sbjct: 390 aaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgacggcctccccctc 331
Query: 447 atggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||| ||||||||||||||||| || |||||||||||
Sbjct: 330 atggttaccgacttccgcaagcggatattcggcgacca 293
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 229 ttttggtggcctgcttctagct 208
>gb|BU970828.1|BU970828 HB15M21r BC Hordeum vulgare subsp. vulgare cDNA clone HB15M21
5-PRIME, mRNA sequence
Length = 492
Score = 321 bits (162), Expect = 2e-086
Identities = 298/344 (86%)
Strand = Plus / Plus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 11 gagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtttctgat 70
Query: 201 ctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggc 260
|||| ||||| |||||| |||||||||||| || || | || ||||| ||| |||||
Sbjct: 71 ttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggc 130
Query: 261 aaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccc 320
|||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 131 aaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcgacccg 190
Query: 321 aacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgac 380
||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| ||
Sbjct: 191 aacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagat 250
Query: 381 atcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcctt 440
||| | |||||||||| || ||||||||||| |||||| ||||||| || |||||
Sbjct: 251 atcaccaaggccaaggagcaactcgggtgggagcccaagatcgccctccgtgacggcctc 310
Query: 441 cccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 311 cccctcatggttaccgacttccgcaagcggatattcggcgacca 354
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 418 ttttggtggcctgcttctagct 439
>gb|BJ546155.1|BJ546155 BJ546155 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34f15 3', mRNA sequence
Length = 555
Score = 307 bits (155), Expect = 3e-082
Identities = 276/317 (87%)
Strand = Plus / Minus
Query: 168 aagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatg 227
||||| ||||||||||||||||| ||||||||| |||| ||||| |||||| |||||||
Sbjct: 553 aagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctgatg 494
Query: 228 gaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggag 287
||||| || || | || ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 493 gaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctggaa 434
Query: 288 cttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaac 347
|| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 433 ctggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaac 374
Query: 348 acccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttggg 407
||||| |||||||| |||||||||||||| || ||| | |||||||||| ||||||
Sbjct: 373 acccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttggg 314
Query: 408 tgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaag 467
|||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 313 tgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgcaag 254
Query: 468 cgcatcttcggcgacca 484
|| || |||||||||||
Sbjct: 253 cggatattcggcgacca 237
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 173 ttttggtggcctgcttctagct 152
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 78 taccttggttgttggtgtaatgttattcttt 48
>gb|AV911559.1|AV911559 AV911559 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13i23 3', mRNA sequence
Length = 551
Score = 303 bits (153), Expect = 5e-081
Identities = 271/311 (87%)
Strand = Plus / Minus
Query: 174 accaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggc 233
||||||||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||
Sbjct: 547 accaggagtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggt 488
Query: 234 gagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgcc 293
|| || | || ||||| ||| ||||||||||||| ||||||||||||||||| || |||
Sbjct: 487 gatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggcc 428
Query: 294 aangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccan 353
|| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 427 aaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccag 368
Query: 354 gacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggag 413
|||||||| |||||||||||||| || ||| | |||||||||| ||||||||||||
Sbjct: 367 gacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggag 308
Query: 414 ccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatc 473
|| |||||| ||||||| || ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 307 cccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggata 248
Query: 474 ttcggcgacca 484
|||||||||||
Sbjct: 247 ttcggcgacca 237
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 173 ttttggtggcctgcttctagct 152
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 78 taccttggttgttggtgtaatgttattcttt 48
>gb|BQ757608.1|BQ757608 EBem10_SQ004_K13_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ004_K13 5', mRNA sequence
Length = 479
Score = 295 bits (149), Expect = 1e-078
Identities = 279/323 (86%)
Strand = Plus / Plus
Query: 162 gatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaag 221
||||| ||||| ||||||||||||||||| ||||| ||| |||| ||||| |||||| |
Sbjct: 3 gatggcaagcagaccaggagtttccaatacgtttccgatttggttgaggggttgatgagg 62
Query: 222 ctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatg 281
||||||||||| || || | || ||||| ||| ||||||||||||| ||||||||||||
Sbjct: 63 ctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatg 122
Query: 282 ctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgt 341
||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 123 ctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgt 182
Query: 342 cagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctc 401
|||||||||| |||||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 183 gagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaa 242
Query: 402 cttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttc 461
|| ||||||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||
Sbjct: 243 ctcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttc 302
Query: 462 cgcaagcgcatcttcggcgacca 484
|||||||| || |||||||||||
Sbjct: 303 cgcaagcggatattcggcgacca 325
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 389 ttttggtggcctgcttctagct 410
>gb|AL510717.1|AL510717 AL510717 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05M18u 3',
mRNA sequence
Length = 580
Score = 293 bits (148), Expect = 5e-078
Identities = 288/334 (86%), Gaps = 1/334 (0%)
Strand = Plus / Minus
Query: 152 ggtttatggtgatggaaagcaaaccaggagtttccaatatgtttct-gatctggtcgagg 210
|||||| || ||||| ||||| ||||||||||||||||| |||||| ||| |||| ||||
Sbjct: 558 ggtttacggcgatggcaagcagaccaggagtttccaatacgtttcttgatttggttgagg 499
Query: 211 gtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcg 270
| |||||| |||||||||||| || || | || ||||| ||| ||||||||||||| |
Sbjct: 498 ggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtg 439
Query: 271 agttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgga 330
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 438 agttcaccatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcgga 379
Query: 331 tcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtg 390
||||||||||| |||||||||| |||||||| |||||||||||||| || ||| | |
Sbjct: 378 tcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaagg 319
Query: 391 ccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatgg 450
||||||||| || ||||||||||| |||||| ||||||| || ||||| ||||||||||
Sbjct: 318 ccaaggagcaactcgggtgggagcccaagatcgccctccgtgacggcctccccctcatgg 259
Query: 451 tcaccgacttccgcaagcgcatcttcggcgacca 484
| ||||||||||||||||| || |||||||||||
Sbjct: 258 ttaccgacttccgcaagcggatattcggcgacca 225
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 161 ttttggtggcctgcttctagct 140
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 66 taccttggttgttggtgtaatgttattcttt 36
>gb|CV062330.1|CV062330 BNEL78h1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL78h1 5' similar to UDP-glucuronic
acid decarboxylase, mRNA sequence
Length = 563
Score = 291 bits (147), Expect = 2e-077
Identities = 274/317 (86%)
Strand = Plus / Plus
Query: 168 aagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatg 227
||||| ||||||||||||||||| ||||||||| |||| ||||| |||||| |||||||
Sbjct: 4 aagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctgatg 63
Query: 228 gaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggag 287
||||| || || | || ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 64 gaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctggaa 123
Query: 288 cttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaac 347
|| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 124 ctggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaac 183
Query: 348 acccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttggg 407
||||| |||||||| |||||||||||||| || ||| | || ||||||| || |||
Sbjct: 184 acccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactcggg 243
Query: 408 tgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaag 467
|||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 244 tgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgcaag 303
Query: 468 cgcatcttcggcgacca 484
|| || |||||||||||
Sbjct: 304 cggatattcggcgacca 320
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 384 ttttggtggcctgcttctagct 405
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 479 taccttggttgttggtgtaatgttattcttt 509
>gb|CV063225.1|CV063225 BNEL88a10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88a10 5' similar to dTDP-glucose
4-6-dehydratase-like protein, mRNA sequence
Length = 622
Score = 291 bits (147), Expect = 2e-077
Identities = 274/317 (86%)
Strand = Plus / Plus
Query: 168 aagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatg 227
||||| ||||||||||||||||| ||||||||| |||| ||||| |||||| |||||||
Sbjct: 4 aagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctgatg 63
Query: 228 gaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggag 287
||||| || || | || ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 64 gaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctggaa 123
Query: 288 cttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaac 347
|| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 124 ctggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaac 183
Query: 348 acccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttggg 407
||||| |||||||| |||||||||||||| || ||| | || ||||||| || |||
Sbjct: 184 acccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactcggg 243
Query: 408 tgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaag 467
|||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 244 tgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgcaag 303
Query: 468 cgcatcttcggcgacca 484
|| || |||||||||||
Sbjct: 304 cggatattcggcgacca 320
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 384 ttttggtggcctgcttctagct 405
>gb|AV914847.1|AV914847 AV914847 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8i09 5', mRNA sequence
Length = 519
Score = 285 bits (144), Expect = 1e-075
Identities = 269/311 (86%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 32 gtgccaaccttgag-ttangatcgcacgtatcttcaacacatatggccctcgcatgtgca 90
|||||||||||||| ||| ||| || || ||||| ||||| |||||||| ||||||||||
Sbjct: 209 gtgccaaccttgaggttaggattgctcggatctttaacacctatggcccacgcatgtgca 268
Query: 91 ttgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangagccattga 150
|||||||||||||||||||||| | | ||||||||||| || | ||| ||||| ||||
Sbjct: 269 ttgacgatggccgtgttgtcagcaactttgttgctcaggcgctaaggaaggagcctttga 328
Query: 151 cggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagg 210
||||||| || ||||| ||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 329 cggtttacggcgatggcaagcagaccaggagtttccaatacgtttctgatttggttgagg 388
Query: 211 gtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcg 270
| |||||| |||||||||||| || || | || ||||| ||| ||||||||||||| |
Sbjct: 389 ggttgatgaggctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtg 448
Query: 271 agttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgga 330
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 449 agttcaccatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcgga 508
Query: 331 tcgagttccgt 341
|||||||||||
Sbjct: 509 tcgagttccgt 519
>gb|BF256948.2|BF256948 HVSMEf0011H06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H06f, mRNA sequence
Length = 538
Score = 280 bits (141), Expect = 7e-074
Identities = 337/404 (83%)
Strand = Plus / Plus
Query: 81 cgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaan 140
||||||||||||||||||||||| ||||||| | | ||||||||||| || | |||
Sbjct: 1 cgcatgtgcattgacgatggccgagttgtcatcaactttgttgctcaggcgctaaggaag 60
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| |||||||||| ||||||| |||| ||||||||||||||||| |||||||||
Sbjct: 61 gagcctatgacggtttactgtgatggctagcagaccaggagtttccaatacgtttctgat 120
Query: 201 ctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggc 260
|||| ||||| ||||||||||||||||| | || || | | ||||| ||| |||||
Sbjct: 121 ttggttgaggggttgatgaagctgatggaatgtgatcacattgagccattcaacttgggc 180
Query: 261 aaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccc 320
||||||| ||||||||||||||||| || | ||| ||||| |||||||||||||||||
Sbjct: 181 taccccggagagttcaccatgctggaactggacaaggttgtgcaggacaccatcgacccg 240
Query: 321 aacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgac 380
||||| | ||||||||||||| |||||||||| |||||||| ||||| |||||||| ||
Sbjct: 241 aacgcgctgatcgagttccgtgagaacacccaggacgaccctcacaatcgcaagccagat 300
Query: 381 atcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcctt 440
||| | | || ||||| |||||||||||||| |||||| ||||||| || |||||
Sbjct: 301 atcaccaaggacatggagcaacttgggtgggagcccaagatcgccctccgtgacggcctc 360
Query: 441 cccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
|||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 361 cccctcatggataccgacttccgcaagcggatattcggcgacca 404
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 557 tggtggcctgcttctagct 575
|||||||||||||||||||
Sbjct: 471 tggtggcctgcttctagct 489
>gb|BF260520.3|BF260520 HVSMEf0022D16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D16f, mRNA sequence
Length = 691
Score = 268 bits (135), Expect = 3e-070
Identities = 294/348 (84%)
Strand = Plus / Plus
Query: 137 gaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttc 196
||| ||||| ||||||| ||| || ||||| ||||| ||||||||||| ||||| ||||
Sbjct: 28 gaaggagcctttgacggcttacggcgatggcaagcacaccaggagtttacaatacctttc 87
Query: 197 tgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacct 256
|||| |||| ||||| ||||| ||||||||||||||| || | | ||||| |||
Sbjct: 88 tgatttggttgagggggcgatgaggctgatggaaggcgatcacattgtgccattcaactc 147
Query: 257 gggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcga 316
|||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||| |
Sbjct: 148 gggcaaccccggtgagttcaccatgctggaactggccaacgttgtgcaggacaccatcta 207
Query: 317 ccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcc 376
||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct: 208 ccccaacgcgcggatcgagttccgtgagaacacccatgacgacccgtacaagcgcatgcc 267
Query: 377 cgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgaggg 436
|| ||| | |||||||||| |||||||||||||| |||||| ||||||| || ||
Sbjct: 268 agatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgacgg 327
Query: 437 ccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 328 cctgcccctcatggttaccgacttccgcaagcggatattcggcgacca 375
>gb|BJ549915.1|BJ549915 BJ549915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36d06 3', mRNA sequence
Length = 463
Score = 250 bits (126), Expect = 6e-065
Identities = 210/239 (87%)
Strand = Plus / Minus
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccag 305
||||| ||| ||||||||| ||| ||||||||||||||||| || ||||| |||||||||
Sbjct: 459 ccattcaacttgggcaaccncggtgagttcaccatgctggaactggccaaggttgtccag 400
Query: 306 gacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacac 365
|||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||
Sbjct: 399 gacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcac 340
Query: 366 aagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatcccc 425
||||||||||| || ||| | |||||||||| |||||||||||||| |||||| ||
Sbjct: 339 aagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgcc 280
Query: 426 ctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 279 ctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 221
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 157 ttttggtggcctgcttctagct 136
>gb|AV909659.1|AV909659 AV909659 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13i23 5', mRNA sequence
Length = 521
Score = 248 bits (125), Expect = 2e-064
Identities = 254/295 (86%), Gaps = 2/295 (0%)
Strand = Plus / Plus
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatgg-aaggcgagcatgtaggaccatt 250
||||||||| |||| ||||| |||||| |||||||| |||| || || | || |||||
Sbjct: 3 gtttctgatttggttgaggggttgatgaggctgatggnaaggtgatcacattgggccatt 62
Query: 251 taacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacac 310
||| ||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 63 caacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacac 122
Query: 311 catcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcg 370
||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct: 123 catcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcg 182
Query: 371 caagcccgacatcggccgtgc-caaggagctccttgggtgggagccaaagatccccctcc 429
|||||| || ||| | || |||||||| |||||||||||||| |||||| ||||||
Sbjct: 183 caagccagatatcaccaaggcacaaggagcaacttgggtgggagcccaagatcgccctcc 242
Query: 430 gcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 243 gtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 297
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 361 ttttggtggcctgcttctagct 382
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 456 taccttggttgttggtgtaatgttattcttt 486
>gb|AJ463159.1|AJ463159 AJ463159 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085A08F1, mRNA sequence
Length = 420
Score = 244 bits (123), Expect = 4e-063
Identities = 232/269 (86%)
Strand = Plus / Plus
Query: 216 atgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttc 275
|||| |||||||||||| || || | || ||||| ||| ||||||||||||| ||||||
Sbjct: 1 atgaggctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttc 60
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgag 335
||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 61 accatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgag 120
Query: 336 ttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaag 395
|||||| |||||||||| |||||||| |||||||||||||| || ||| | || |||
Sbjct: 121 ttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaag 180
Query: 396 gagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtcacc 455
|||| || ||||||||||| |||||| ||||||| || ||||| ||||||||||| |||
Sbjct: 181 gagcaactcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggttacc 240
Query: 456 gacttccgcaagcgcatcttcggcgacca 484
|||||||||||||| || |||||||||||
Sbjct: 241 gacttccgcaagcggatattcggcgacca 269
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 333 ttttggtggcctgcttctagct 354
>gb|AJ463158.1|AJ463158 AJ463158 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037F02F1, mRNA sequence
Length = 360
Score = 240 bits (121), Expect = 6e-062
Identities = 209/239 (87%)
Strand = Plus / Plus
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccag 305
||||| ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct: 21 ccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccag 80
Query: 306 gacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacac 365
|||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||
Sbjct: 81 gacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcac 140
Query: 366 aagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatcccc 425
||||||||||| || ||| | || ||||||| || ||||||||||| |||||| ||
Sbjct: 141 aagcgcaagccagatatcaccaaggcaaaggagcaactcgggtgggagcccaagatcgcc 200
Query: 426 ctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 201 ctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 259
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 323 ttttggtggcctgcttctagct 344
>gb|BE215685.3|BE215685 HV_CEb0007P22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007P22f, mRNA sequence
Length = 521
Score = 238 bits (120), Expect = 2e-061
Identities = 208/238 (87%)
Strand = Plus / Plus
Query: 247 catttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccagg 306
|||| ||| ||||||||||||| ||||||||||||||||| || ||||| ||||||||||
Sbjct: 1 cattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccagg 60
Query: 307 acaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacaca 366
||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 61 acaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcaca 120
Query: 367 agcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccc 426
|||||||||| || ||| | || ||||||| || ||||||||||| |||||| |||
Sbjct: 121 agcgcaagccagatatcaccaaggcaaaggagcaactcgggtgggagcccaagatcgccc 180
Query: 427 tccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
|||| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 181 tccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 238
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 302 ttttggtggcctgcttctagct 323
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 397 taccttggttgttggtgtaatgttattcttt 427
>gb|AL502423.1|AL502423 AL502423 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I19u 3', mRNA sequence
Length = 645
Score = 224 bits (113), Expect = 3e-057
Identities = 203/231 (87%), Gaps = 2/231 (0%)
Strand = Plus / Minus
Query: 256 tgggcaaccccggc-gagttcaccatgctggagcttg-ccaangttgtccaggacaccat 313
||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 563 tgggcaaccccggttgagttcaccatgctggaacttggccaaggttgtccaggacaccat 504
Query: 314 cgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaa 373
|||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct: 503 cgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaa 444
Query: 374 gcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcga 433
||| || ||| | |||||||||| || ||||||||||| |||||| ||||||| ||
Sbjct: 443 gccagatatcaccaaggccaaggagcaactcgggtgggagcccaagatcgccctccgtga 384
Query: 434 gggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 383 cggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 333
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 269 ttttggtggcctgcttctagct 248
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 755 ataaacctggatgatctaattctttgttgaga 786
||||| |||||| ||||||||||||||||||
Sbjct: 81 ataaatctggatcttctaattctttgttgaga 50
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 174 taccttggttgttggtgtaatgttattcttt 144
>gb|BQ471753.1|BQ471753 HV03F22r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F22
5-PRIME, mRNA sequence
Length = 599
Score = 218 bits (110), Expect = 2e-055
Identities = 233/273 (85%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 327 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 386
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 387 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 446
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 447 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 506
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 507 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 566
Query: 250 ttaacctgggcaaccccggcgagttcaccatgc 282
| ||| || |||||||||| |||||||||||||
Sbjct: 567 tcaacttgngcaaccccggtgagttcaccatgc 599
>gb|BI960078.1|BI960078 HVSMEn0023C04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C04f, mRNA sequence
Length = 617
Score = 214 bits (108), Expect = 3e-054
Identities = 346/426 (81%), Gaps = 1/426 (0%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| || || || ||||||||||| ||||||||||| || ||||| | |
Sbjct: 5 atcttcaacacctacgggccgcgcatgtgcatcgacgatggccgggtcgtcagcaacttt 64
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|| || |||||||||| ||| ||||| ||||||| || || || || ||||| || |||
Sbjct: 65 gtcgcccaggcactgaggaaggagcccctgacggtgtacggcgacggcaagcagacgagg 124
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatg-aagctgatggaaggcgagca 238
|| ||||| || || || |||||||| ||||| |||||| ||||||||||| || |||||
Sbjct: 125 agcttccagtacgtctccgatctggttgaggggctgatgnaagctgatggagggggagca 184
Query: 239 tgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangt 298
|| || || || |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 185 cgtggggccgttcaacctggggaacccgggggagttcacgatgctggagctggccaaggt 244
Query: 299 tgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacga 358
|| |||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 245 ggtgcaggacaccatcgaccccaacgcaaggatcgagttccgggccaacaccgccgacga 304
Query: 359 cccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaa 418
||| |||||||||||||| |||||| | ||||||||||| || ||||||||||| ||
Sbjct: 305 cccgcacaagcgcaagccggacatcaccaaggccaaggagctgctcgggtgggagcccaa 364
Query: 419 gatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcgg 478
| | | ||||| | ||||| || ||||||||| |||||||||| |||||||||||
Sbjct: 365 ggtggcgctccggaacggcctcccgctcatggtccangacttccgcacccgcatcttcgg 424
Query: 479 cgacca 484
||||||
Sbjct: 425 cgacca 430
>gb|BJ449493.1|BJ449493 BJ449493 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25e05 5', mRNA sequence
Length = 398
Score = 212 bits (107), Expect = 1e-053
Identities = 300/366 (81%)
Strand = Plus / Plus
Query: 50 gatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
|||||| || ||||||||||| || || || ||||||||||| ||||||||||| || ||
Sbjct: 27 gatcgcgcggatcttcaacacctacgggccgcgcatgtgcatcgacgatggccgggtcgt 86
Query: 110 cagttaantcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaa 169
||| | | || || |||||||||| ||| ||||| ||||||| || || || || ||
Sbjct: 87 cagcaactttgtcgcccaggcactgaggaaggagcccctgacggtgtacggcgacggcaa 146
Query: 170 gcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatgga 229
||| || ||||| ||||| || || || |||||||| ||||| |||||||||||||||||
Sbjct: 147 gcagacgaggagcttccagtacgtctccgatctggttgaggggctgatgaagctgatgga 206
Query: 230 aggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| ||||| || || || || |||||||| ||||| || |||||||| |||||||||||
Sbjct: 207 gggggagcacgtggggccgttcaacctggggaacccgggggagttcacgatgctggagct 266
Query: 290 tgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacac 349
||||| || || |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 267 ggccaaggtggtgcaggacaccatcgaccccaacgcaaggatcgagttccgggccaacac 326
Query: 350 ccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtg 409
| |||||||| |||||||||||||| |||||| | ||||||||||| || |||||
Sbjct: 327 cgccgacgacccgcacaagcgcaagccggacatcaccaaggccaaggagctgctcgggtg 386
Query: 410 ggagcc 415
||||||
Sbjct: 387 ggagcc 392
>gb|BF259502.2|BF259502 HVSMEf0019I02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019I02f, mRNA sequence
Length = 524
Score = 208 bits (105), Expect = 2e-052
Identities = 187/215 (86%)
Strand = Plus / Minus
Query: 270 gagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgg 329
||||||||||||||| | || || || ||||||||||||||||||||||| ||||| |||
Sbjct: 523 gagttcaccatgctgaaactggcaaaggttgtccaggacaccatcgacccgaacgcgcgg 464
Query: 330 atcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgt 389
|||||||||||| ||||||| || |||||||| |||||||||||||| || ||| |
Sbjct: 463 atcgagttccgtgagaacactcaggacgacccgcacaagcgcaagccagatatcaccaag 404
Query: 390 gccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatg 449
|||||||||| |||||||||||||| |||||| ||||||| || ||||| |||||||||
Sbjct: 403 gccaaggagcaacttgggtgggagcccaagatcgccctccgtgacggcctccccctcatg 344
Query: 450 gtcaccgacttccgcaagcgcatcttcggcgacca 484
|| ||||||||||||||||| || |||||||||||
Sbjct: 343 gttaccgacttccgcaagcggatattcggcgacca 309
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 245 ttttggtggcctgcttctagct 224
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 755 ataaacctggatgatctaattctttgttgaga 786
||||| |||||| ||||||||||||||||||
Sbjct: 57 ataaatctggatcttctaattctttgttgaga 26
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 150 taccttggttgttggtgtaatgttattcttt 120
>gb|BU969174.1|BU969174 HB10M08r BC Hordeum vulgare subsp. vulgare cDNA clone HB10M08
5-PRIME, mRNA sequence
Length = 584
Score = 208 bits (105), Expect = 2e-052
Identities = 234/275 (85%), Gaps = 3/275 (1%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 310 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 369
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 370 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 429
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 430 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 489
Query: 190 atgtttctgatctggtcgagggt-ctgatgaagctgatggaaggcgagcatgtaggacca 248
| ||||||||| |||| ||||| |||||| |||||||||||| || || | | |||
Sbjct: 490 acgtttctgatttggttgagggngttgatgaggctgatggaaggtgatcacattgngcca 549
Query: 249 tttaacctgggcaaccccggcgagttcaccatgct 283
|| ||| ||||||||||||| ||||||||||||||
Sbjct: 550 ttcaacttgggcaaccccggtgagttcaccatgct 584
>gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m11 5', mRNA sequence
Length = 623
Score = 198 bits (100), Expect = 2e-049
Identities = 218/256 (85%), Gaps = 2/256 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 368 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 427
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 428 cctatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 487
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 488 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 547
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| ||||||||| |||| ||||| |||||| |||||||||||| || || | || ||||
Sbjct: 548 acgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccat 607
Query: 250 ttaacctgggcaaccc 265
| ||| ||||||||||
Sbjct: 608 tcaacttgggcaaccc 623
>gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h19 5', mRNA sequence
Length = 661
Score = 196 bits (99), Expect = 8e-049
Identities = 193/223 (86%), Gaps = 2/223 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 421 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 480
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 481 cctatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 540
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 541 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 600
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaagg 232
| ||||||||| |||| ||||| |||||| ||||||||||||
Sbjct: 601 acgtttctgatttggttgaggggttgatgaggctgatggaagg 643
>gb|BU988947.1|BU988947 HF19D20r HF Hordeum vulgare subsp. vulgare cDNA clone HF19D20
5-PRIME, mRNA sequence
Length = 492
Score = 196 bits (99), Expect = 8e-049
Identities = 193/223 (86%), Gaps = 2/223 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 259 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 318
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 319 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 378
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 379 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaat 438
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaagg 232
| ||||||||| |||| ||||| |||||| ||||||||||||
Sbjct: 439 acgtttctgatttggttgaggggttgatgaggctgatggaagg 481
>gb|AJ436651.1|AJ436651 AJ436651 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200036H03F1, mRNA sequence
Length = 466
Score = 178 bits (90), Expect = 2e-043
Identities = 161/185 (87%)
Strand = Plus / Plus
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgac 359
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 13 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 72
Query: 360 ccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaag 419
|| |||||||||||||| || ||| | || ||||||| || ||||||||||| |||
Sbjct: 73 ccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactcgggtgggagcccaag 132
Query: 420 atccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggc 479
||| ||||||| || ||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct: 133 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 192
Query: 480 gacca 484
|||||
Sbjct: 193 gacca 197
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 261 ttttggtggcctgcttctagct 282
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 356 taccttggttgttggtgtaatgttattcttt 386
>gb|BE455469.2|BE455469 HVSMEg0017F01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017F01f, mRNA sequence
Length = 588
Score = 174 bits (88), Expect = 3e-042
Identities = 230/278 (82%)
Strand = Plus / Plus
Query: 207 gagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaacccc 266
||||| ||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 260 gaggggctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccg 319
Query: 267 ggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgca 326
|| |||||||| ||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct: 320 ggggagttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgca 379
Query: 327 cggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggc 386
||||||||||||| |||||| |||||||| |||||||||||||| |||||| |
Sbjct: 380 aggatcgagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcacc 439
Query: 387 cgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctc 446
||||||||||| || ||||||||||| ||| | | ||||| | ||||| || |||
Sbjct: 440 aaggccaaggagctgctcgggtgggagcccaaggtggcgctccggaacggcctcccgctc 499
Query: 447 atggtcaccgacttccgcaagcgcatcttcggcgacca 484
|||||| |||||||||| |||||||||||||||||
Sbjct: 500 atggtccaggacttccgcacccgcatcttcggcgacca 537
>gb|BQ757060.1|BQ757060 EBem10_SQ002_K18_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_K18 5', mRNA sequence
Length = 315
Score = 170 bits (86), Expect = 5e-041
Identities = 154/177 (87%)
Strand = Plus / Plus
Query: 308 caccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaa 367
|||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 1 caccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaa 60
Query: 368 gcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccct 427
||||||||| || ||| | |||||||||| || ||||||||||| |||||| ||||
Sbjct: 61 gcgcaagccagatatcaccaaggccaaggagcaactcgggtgggagcccaagatcgccct 120
Query: 428 ccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 121 ccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 177
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 241 ttttggtggcctgcttctagct 262
>gb|BG301258.2|BG301258 HVSMEb0020E14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020E14f, mRNA sequence
Length = 900
Score = 168 bits (85), Expect = 2e-040
Identities = 298/367 (81%), Gaps = 3/367 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtgt-gccaaccttgagtt-angatcgcacgtatcttcaaca 69
|||||||||| |||||||| | |||||||| ||| | | |||||| || ||||||||||
Sbjct: 331 tgaccatggactaccaccgcggcgccaacctcgaggtgaggatcgcgcggatcttcaaca 390
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| || || || ||||||||||| ||||||||||| || ||||| | | || || ||||
Sbjct: 391 cctacgggccgcgcatgtgcatcgacgatggccgggtcgtcagcaactttgtcgcccagg 450
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
|||||| ||| ||||| ||||||| || || || | ||||| || | ||| ||||| |
Sbjct: 451 cactgaggaaggagcccctgacggtgtacggcgaccgcaagcagacgatgagcttccagt 510
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| || || |||||||| ||||| ||||||||||||||||| || ||||| || || || |
Sbjct: 511 acgtctccgatctggttgaggggctgatgaagctgatggagggggagcacgtggggccgt 570
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| || ||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||
Sbjct: 571 tcaaactggggaaccccggggagttcacgatgctggagctggccaaagtggtgcaggaca 630
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||
Sbjct: 631 ccatcgaccccaacgca-ggatcgagttccgggccaacaccgtcgacgacccggacaagc 689
Query: 370 gcaagcc 376
|||||||
Sbjct: 690 gcaagcc 696
>gb|BG418221.1|BG418221 HVSMEk0021P03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0021P03f, mRNA sequence
Length = 491
Score = 163 bits (82), Expect = 1e-038
Identities = 224/272 (82%)
Strand = Plus / Minus
Query: 213 ctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgag 272
||||||||||||||||| || ||||| || || || || |||||||| ||||| || |||
Sbjct: 490 ctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccgggggag 431
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||| ||||||||||| ||||| || || |||||||||||||||||||||||| |||||
Sbjct: 430 ttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaaggatc 371
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||| |||||| |||||||| |||||||||||||| |||||| | |||
Sbjct: 370 gagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaaggcc 311
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
|||||||| || ||||||||||| ||| | | ||||| | ||||| || |||||||||
Sbjct: 310 aaggagctgctcgggtgggagcccaaggtggcgctccggaacggcctcccgctcatggtc 251
Query: 453 accgacttccgcaagcgcatcttcggcgacca 484
|||||||||| ||||| |||||||||||
Sbjct: 250 caggacttccgcacccgcattttcggcgacca 219
>gb|BI947157.1|BI947157 HVSMEl0003P09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003P09f, mRNA sequence
Length = 498
Score = 161 bits (81), Expect = 4e-038
Identities = 149/172 (86%)
Strand = Plus / Plus
Query: 313 tcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgca 372
||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 1 tcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgca 60
Query: 373 agcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcg 432
|||| || ||| | | |||||||| |||||||||||||| |||||| ||||||| |
Sbjct: 61 agccagatatcaccaagggcaaggagcaacttgggtgggagcccaagatcgccctccgtg 120
Query: 433 agggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
| ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 121 acggcctccccctcatggttaccgacttccgcaagcggatattcggcgacca 172
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 554 ttttggtggcctgcttctagct 575
||||||||||||||||||||||
Sbjct: 236 ttttggtggcctgcttctagct 257
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 755 ataaacctggatgatctaattctttgttgaga 786
||||| |||||| ||||||||||||||||||
Sbjct: 424 ataaatctggatcttctaattctttgttgaga 455
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 648 taccttggttgatgctgtaatgctattcttt 678
||||||||||| || ||||||| ||||||||
Sbjct: 331 taccttggttgttggtgtaatgttattcttt 361
>gb|BM370165.2|BM370165 EBro08_SQ003_D02_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_D02 5', mRNA sequence
Length = 242
Score = 153 bits (77), Expect = 1e-035
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 213 ctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgag 272
||||||||||||||||| || ||||| || || || || |||||||| ||||| || |||
Sbjct: 3 ctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccgggggag 62
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||| ||||||||||| ||||| || || |||||||||||||||||||||||| |||||
Sbjct: 63 ttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaaggatc 122
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||| |||||| |||||||| |||||||||||||| |||||| | |||
Sbjct: 123 gagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaaggcc 182
Query: 393 aaggagctccttgggtgggagcc 415
|||||||| || |||||||||||
Sbjct: 183 aaggagctgctcgggtgggagcc 205
>gb|BJ456934.1|BJ456934 BJ456934 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25e05 3', mRNA sequence
Length = 434
Score = 149 bits (75), Expect = 2e-034
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
|||||||| ||||| || |||||||| ||||||||||| ||||| || || |||||||||
Sbjct: 417 aacctggggaacccgggggagttcacgatgctggagctggccaaggtggtgcaggacacc 358
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||
Sbjct: 357 atcgaccccaacgcaaggatcgagttccgggccaacaccgccgacgacccgcacaagcgc 298
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| |||||| | ||||||||||| || ||||||||||| ||| | | |||||
Sbjct: 297 aagccggacatcaccaaggccaaggagctgctcgggtgggagcccaaggtggcgctccgg 238
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
| ||||| || ||||||||| |||||||||| |||||||||||||||||
Sbjct: 237 aacggcctcccgctcatggtccaggacttccgcacccgcatcttcggcgacca 185
>gb|BQ756196.1|BQ756196 EBem05_SQ004_C06_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_C06 5', mRNA sequence
Length = 251
Score = 149 bits (75), Expect = 2e-034
Identities = 163/191 (85%), Gaps = 2/191 (1%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttga-gttangatcgcacgtatcttcaaca 69
||||||||| ||||||||||| |||||||||||| |||| ||| || || ||||| ||||
Sbjct: 60 tgaccatggcttaccaccgtggtgccaaccttgacgttaggattgctcggatctttaaca 119
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| ||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct: 120 cctatggcccgcgcatgtgcattgacgatggccgtgttgtcatcaactttgctgctcagg 179
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| || | ||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||
Sbjct: 180 cgctaaagaaggagcctttgacggtttacggcgatggctagcacaccaggagtttccaat 239
Query: 190 atgtttctgat 200
| |||||||||
Sbjct: 240 acgtttctgat 250
>gb|BJ549498.1|BJ549498 BJ549498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36d06 5', mRNA sequence
Length = 523
Score = 137 bits (69), Expect = 6e-031
Identities = 145/169 (85%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
|||||||||| |||||||||| ||||||||||||| ||| ||| || || ||||| ||||
Sbjct: 355 tgaccatggactaccaccgtggtgccaaccttgaggttaggattgctcggatctttaaca 414
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 415 cctatggcccacgcatgtgcattgacgatggccgtgttgtcagcaactttgttgctcagg 474
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccag 178
| || | ||| ||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 475 cgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccag 523
>gb|BE519855.1|BE519855 HV_CEb0021H15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021H15f, mRNA sequence
Length = 715
Score = 135 bits (68), Expect = 2e-030
Identities = 244/302 (80%), Gaps = 2/302 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtgt-gccaaccttgagtt-angatcgcacgtatcttcaaca 69
|||||||||| |||||||| | |||||||| ||| | | |||||| || ||||||||||
Sbjct: 414 tgaccatggactaccaccgcggcgccaacctcgaggtgaggatcgcgcggatcttcaaca 473
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
| || || || ||||||||||| ||||||||||| || ||||| | | || || ||||
Sbjct: 474 cctacgggccgcgcatgtgcatcgacgatggccgggtcgtcagcaactttgtcgcccagg 533
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
|||||| ||| ||||| ||||||| || || || || ||||| || ||||| ||||| |
Sbjct: 534 cactgaggaaggagcccctgacggtgtacggcgacggcaagcagacgaggagcttccagt 593
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
| || || |||||||| ||||| ||||||||||||||||| || ||||| || || || |
Sbjct: 594 acgtctccgatctggttgaggggctgatgaagctgatggagggggagcacgtggggccgt 653
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| |||||||| ||||| | |||||||| ||||||||||| ||||| || || |||||||
Sbjct: 654 tcaacctggggaacccggnggagttcacgatgctggagctggccaaggtggtgcaggaca 713
Query: 310 cc 311
||
Sbjct: 714 cc 715
>gb|BF620279.2|BF620279 HVSMEc0019E20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019E20f, mRNA sequence
Length = 677
Score = 133 bits (67), Expect = 1e-029
Identities = 210/259 (81%)
Strand = Plus / Minus
Query: 82 gcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaang 141
|||||||||| ||||||||||| || ||||| | | || || |||||||| | ||| |
Sbjct: 563 gcatgtgcatcgacgatggccgggtcgtcagcaactttgtcgcccaggcacttaggaagg 504
Query: 142 agccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatc 201
|||| | ||||| || || || || ||||| || ||||| ||||| || || || ||||
Sbjct: 503 agcccctaacggtgtacggcgacggcaagcagacgaggagcttccagtacgtctccgatc 444
Query: 202 tggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggca 261
|||| ||| | ||||| ||||||||||| | ||||| || || || || |||||||| |
Sbjct: 443 tggttgagcggctgatcaagctgatggaggaggagcacgtgggcccgttcaacctgggga 384
Query: 262 accccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccca 321
|||| || |||||||| ||||||||||| ||||| || || |||||||||||||||||||
Sbjct: 383 acccgggggagttcacgatgctggagctggccaaggtggtgcaggacaccatcgacccca 324
Query: 322 acgcacggatcgagttccg 340
||||| |||||||||||||
Sbjct: 323 acgcaaggatcgagttccg 305
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,683
Number of Sequences: 312970
Number of extensions: 77683
Number of successful extensions: 22027
Number of sequences better than 0.5: 129
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21578
Number of HSP's gapped (non-prelim): 349
length of query: 805
length of database: 175,134,539
effective HSP length: 19
effective length of query: 786
effective length of database: 169,188,109
effective search space: 132981853674
effective search space used: 132981853674
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)