BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE420728.1|BE420728 HWM001.H09 ITEC HWM Barley Leaf Libr... 367 e-100
gb|BF621115.2|BF621115 HVSMEa0004B20f Hordeum vulgare seedl... 367 e-100
gb|BU979069.1|BU979069 HA15B05r HA Hordeum vulgare subsp. v... 367 e-100
gb|BU979480.1|BU979480 HA16E20r HA Hordeum vulgare subsp. v... 367 e-100
gb|CA001791.1|CA001791 HS05J13r HS Hordeum vulgare subsp. v... 367 e-100
gb|BJ547531.1|BJ547531 BJ547531 K. Sato unpublished cDNA li... 367 e-100
gb|BJ547861.1|BJ547861 BJ547861 K. Sato unpublished cDNA li... 367 e-100
gb|AL503599.1|AL503599 AL503599 Hordeum vulgare Barke roots... 359 1e-097
gb|BE601776.2|BE601776 HVSMEh0099I05f Hordeum vulgare 5-45 ... 357 5e-097
gb|BF619204.2|BF619204 HVSMEc0015B21f Hordeum vulgare seedl... 343 7e-093
gb|BU974881.1|BU974881 HB29G07r BC Hordeum vulgare subsp. v... 299 1e-079
gb|BU969261.1|BU969261 HB11A08r BC Hordeum vulgare subsp. v... 293 6e-078
gb|BG299708.1|BG299708 HVSMEa0021H20f Hordeum vulgare seedl... 250 8e-065
gb|BU967835.1|BU967835 HB05I11r BC Hordeum vulgare subsp. v... 216 1e-054
gb|BJ548991.1|BJ548991 BJ548991 K. Sato unpublished cDNA li... 172 2e-041
gb|BF623183.2|BF623183 HVSMEa0015A20f Hordeum vulgare seedl... 165 4e-039
gb|AL501018.1|AL501018 AL501018 Hordeum vulgare Barke roots... 137 9e-031
gb|CA001055.1|CA001055 HS05J13u HS Hordeum vulgare subsp. v... 137 9e-031
gb|AV920834.1|AV920834 AV920834 K. Sato unpublished cDNA li... 68 7e-010
gb|BM368467.2|BM368467 EBem08_SQ002_G06_R embryo, 40 DPA, n... 68 7e-010
gb|CA000585.1|CA000585 HS08C04u HS Hordeum vulgare subsp. v... 68 7e-010
gb|BM816160.1|BM816160 HC108D03_SK.ab1 HC Hordeum vulgare s... 64 1e-008
gb|BM816161.1|BM816161 HC108D04_SK.ab1 HC Hordeum vulgare s... 44 0.010
gb|CV063171.1|CV063171 BNEL87d4 Barley EST endosperm librar... 44 0.010
gb|AL503025.1|AL503025 AL503025 Hordeum vulgare Barke roots... 42 0.038
gb|BG368092.2|BG368092 HVSMEi0015K01f Hordeum vulgare 20 DA... 40 0.15
>gb|BE420728.1|BE420728 HWM001.H09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM001.H09, mRNA sequence
Length = 1193
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 144 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 203
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 204 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 263
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 264 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 323
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 324 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 383
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 384 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 443
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 444 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 503
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 504 cagcaccacgatg 516
Score = 69.9 bits (35), Expect = 2e-010
Identities = 136/167 (81%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 575 atgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccacacgag 634
||||||||||| ||||| ||||||||||| || | || |||||| | | ||||||||
Sbjct: 607 atgatgccagatattattgtaccaaacaatattctcttcgtccaagaactcccacacgac 666
Query: 635 acgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcgg 694
|||| | ||||||| |||||| ||||||||||| ||| || |||||||| |||| |
Sbjct: 667 gcgaccgctttgatgctgcagatgtccttctgccagttcccagggttcaaggaagttccg 726
Query: 695 atgatcgaggcgaagcctgggattgctttcgtggagtatggagacga 741
|||||||| || || ||||| | |||||| |||||||||||||||||
Sbjct: 727 atgatcgaagc-aaacctggta-tgcttttgtggagtatggagacga 771
>gb|BF621115.2|BF621115 HVSMEa0004B20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0004B20f, mRNA sequence
Length = 792
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 91 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 150
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 151 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 210
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 211 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 270
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 271 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 330
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 331 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 390
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 391 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 450
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 451 cagcaccacgatg 463
Score = 107 bits (54), Expect = 8e-022
Identities = 140/169 (82%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 552 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 611
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || ||||| | ||
Sbjct: 612 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaaggagt 671
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagac 739
||||||||||| || ||||||| |||||||| |||||||||||||||
Sbjct: 672 gcggatgatcgaagcanagcctggtattgcttttgtggagtatggagac 720
>gb|BU979069.1|BU979069 HA15B05r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B05
5-PRIME, mRNA sequence
Length = 548
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 79 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 138
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 139 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 198
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 199 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 258
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 259 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 318
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 319 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 378
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 379 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 438
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 439 cagcaccacgatg 451
>gb|BU979480.1|BU979480 HA16E20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16E20
5-PRIME, mRNA sequence
Length = 506
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 85 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 144
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 145 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 204
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 205 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 264
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 265 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 324
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 325 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 384
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 385 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 444
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 445 cagcaccacgatg 457
>gb|CA001791.1|CA001791 HS05J13r HS Hordeum vulgare subsp. vulgare cDNA clone HS05J13
5-PRIME, mRNA sequence
Length = 416
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 38 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 97
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 98 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 157
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 158 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 217
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 218 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 277
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 278 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 337
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 338 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 397
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 398 cagcaccacgatg 410
>gb|BJ547531.1|BJ547531 BJ547531 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal28m19 5', mRNA sequence
Length = 563
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 55 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 114
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 115 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 174
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 175 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 234
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 235 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 294
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 295 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 354
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 355 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 414
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 415 cagcaccacgatg 427
Score = 58.0 bits (29), Expect = 6e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaa 603
||||||||||||||||||||| |||||||||||
Sbjct: 516 ggtcatgatgccagagattattgtaccaaacaa 548
>gb|BJ547861.1|BJ547861 BJ547861 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40p14 5', mRNA sequence
Length = 604
Score = 367 bits (185), Expect = e-100
Identities = 326/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 44 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 103
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 104 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 163
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 164 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 223
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 224 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 283
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 284 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 343
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||| |||
Sbjct: 344 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtgag 403
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 404 cagcaccacgatg 416
Score = 58.0 bits (29), Expect = 6e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaa 603
||||||||||||||||||||| |||||||||||
Sbjct: 505 ggtcatgatgccagagattattgtaccaaacaa 537
>gb|AL503599.1|AL503599 AL503599 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02L23T 5', mRNA sequence
Length = 675
Score = 359 bits (181), Expect = 1e-097
Identities = 325/373 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 100 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 159
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 160 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 219
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 220 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 279
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 280 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 339
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 340 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 399
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| ||||||||||||| ||||| |||
Sbjct: 400 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcataagcgtgag 459
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 460 cagcaccacgatg 472
Score = 44.1 bits (22), Expect = 0.010
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccaga-gattatcgtaccaaacaa 603
||||||||||||||| |||||| |||||||||||
Sbjct: 562 ggtcatgatgccagaagattattgtaccaaacaa 595
>gb|BE601776.2|BE601776 HVSMEh0099I05f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099I05f, mRNA sequence
Length = 502
Score = 357 bits (180), Expect = 5e-097
Identities = 309/352 (87%)
Strand = Plus / Plus
Query: 125 aacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaagaag 184
||||| |||||||| ||||| |||||||||||||||||||| ||||| | ||||||||||
Sbjct: 94 aacgtgaccatctacatcaataacctcaacgagaagatcaaactcgacgcacttaagaag 153
Query: 185 tccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaagact 244
||||| | || ||||| ||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 154 tccctcaatgcggttttctcccagtttgggaaaatcattgaggtgcttgcttttaagact 213
Query: 245 ttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggct 304
|||||||||||||| ||||| ||||| || ||||||||||| |||||||| || ||||||
Sbjct: 214 ttgaagcataaagggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggct 273
Query: 305 ctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgccaag 364
||||||||||||| | || ||||||||||||||| | |||| ||||||||||||||||
Sbjct: 274 ttgaagaggatgcaagatttccccttctatgacaaacccatgaaaattcaatatgccaag 333
Query: 365 accaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaagaaag 424
||||| |||||| || ||||||| |||||||||||||| ||||||||||||| ||| |||
Sbjct: 334 accaagtcagatgttgtagcaaaagctgatggcaccttcgtacctcgagaaaaaaggaag 393
Query: 425 aggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatg 476
|||| |||||| ||| ||||||||||||||||||| ||||| ||||| ||||
Sbjct: 394 aggaatgatgagaaacctgaaaagaagcagaagcgtgagcagcaccacgatg 445
>gb|BF619204.2|BF619204 HVSMEc0015B21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015B21f, mRNA sequence
Length = 566
Score = 343 bits (173), Expect = 7e-093
Identities = 324/373 (86%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 72 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 131
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 132 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 191
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 192 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 251
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 252 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 311
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||| ||||
Sbjct: 312 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggccccttc 371
Query: 404 gtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgag 463
||||||||||||| ||| ||||||| |||||| ||| |||||||||| |||||||| |||
Sbjct: 372 gtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaa-cagaagcgtgag 430
Query: 464 catcaccatgatg 476
|| ||||| ||||
Sbjct: 431 cagcaccacgatg 443
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 gtcatgatgccagagattatcgtaccaaaca 602
|||||||||||||||||||| ||||||||||
Sbjct: 534 gtcatgatgccagagattattgtaccaaaca 564
>gb|BU974881.1|BU974881 HB29G07r BC Hordeum vulgare subsp. vulgare cDNA clone HB29G07
5-PRIME, mRNA sequence
Length = 410
Score = 299 bits (151), Expect = 1e-079
Identities = 268/307 (87%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 104 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 163
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| ||||||||||||||||| ||
Sbjct: 164 aaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcatt 223
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 224 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 283
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| ||||||||||||| | || ||||||||||||||| |
Sbjct: 284 gttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaaccc 343
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct: 344 atgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttc 403
Query: 404 gtacctc 410
|||||||
Sbjct: 404 gtacctc 410
>gb|BU969261.1|BU969261 HB11A08r BC Hordeum vulgare subsp. vulgare cDNA clone HB11A08
5-PRIME, mRNA sequence
Length = 545
Score = 293 bits (148), Expect = 6e-078
Identities = 247/280 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct: 14 gttttctcccagtttgggaaaatcattgaggtgcttgcttttaagactttgaagcataaa 73
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| ||||| || ||||||||||| |||||||| || |||||| |||||||||||
Sbjct: 74 gggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggctttgaagaggatg 133
Query: 317 cagggctttcccttctatgacaaaactatgagaattcaatatgccaagaccaaatcagat 376
|| | || ||||||||||||||| | |||| ||||||||||||||||||||| ||||||
Sbjct: 134 caagatttccccttctatgacaaacccatgaaaattcaatatgccaagaccaagtcagat 193
Query: 377 attatagcaaaggctgatggcacctttgtacctcgagaaagaagaaagaggactgatgaa 436
|| ||||||| |||||||||||||| ||||||||||||| ||| ||||||| ||||||
Sbjct: 194 gttgtagcaaaagctgatggcaccttcgtacctcgagaaaaaaggaagaggaatgatgag 253
Query: 437 aaatctgaaaagaagcagaagcgcgagcatcaccatgatg 476
||| ||||||||||||||||||| ||||| ||||| ||||
Sbjct: 254 aaacctgaaaagaagcagaagcgtgagcagcaccacgatg 293
Score = 119 bits (60), Expect = 2e-025
Identities = 138/164 (84%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 382 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 441
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || |||||||| ||
Sbjct: 442 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaggaagt 501
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
||||||||||| || |||||||| |||||||| ||||||||||
Sbjct: 502 gcggatgatcgaagcaaagcctggtattgcttttgtggagtatg 545
>gb|BG299708.1|BG299708 HVSMEa0021H20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021H20f, mRNA sequence
Length = 799
Score = 250 bits (126), Expect = 8e-065
Identities = 268/314 (85%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 104 gaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctcaacgagaagatc 163
|||||||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 88 gaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagatc 147
Query: 164 aagctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattctt 223
|| ||||| | ||||||||||||||| | || ||||| | ||||||||||||||| ||
Sbjct: 148 aaactcgacgcacttaagaagtccctcaatgcggttttctgccagtttgggaaaatcatt 207
Query: 224 gatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagat 283
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 208 gaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaagat 267
Query: 284 gtcgcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaact 343
|| |||||||| || |||||| | ||||||||||| | || ||||||||||||||| |
Sbjct: 268 gttgcatcagcaaccgaggcttttaagaggatgcaagatttccccttctatgacaaaccc 327
Query: 344 atgagaattcaatat-gccaagaccaaatcagatattatagcaaaggctgatggcacctt 402
||||||||| ||||| ||| ||||||| |||||| || || |||| ||||||||||||||
Sbjct: 328 atgagaattgaatatggccgagaccaagtcagatgttgtatcaaaagctgatggcacctt 387
Query: 403 tgtacctcgagaaa 416
|| |||| |||||
Sbjct: 388 cgttcctccagaaa 401
>gb|BU967835.1|BU967835 HB05I11r BC Hordeum vulgare subsp. vulgare cDNA clone HB05I11
5-PRIME, mRNA sequence
Length = 468
Score = 216 bits (109), Expect = 1e-054
Identities = 190/217 (87%)
Strand = Plus / Plus
Query: 260 caagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatgcag 319
||||| ||||| || ||||||||||| |||||||| || |||||| |||||||||||||
Sbjct: 13 caagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggctttgaagaggatgcaa 72
Query: 320 ggctttcccttctatgacaaaactatgagaattcaatatgccaagaccaaatcagatatt 379
| || ||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||
Sbjct: 73 gatttccccttctatgacaaacccatgaaaattcaatatgccaagaccaagtcagatgtt 132
Query: 380 atagcaaaggctgatggcacctttgtacctcgagaaagaagaaagaggactgatgaaaaa 439
||||||| |||||||||||||| ||||||||||||| ||| ||||||| |||||| |||
Sbjct: 133 gtagcaaaagctgatggcaccttcgtacctcgagaaaaaaggaagaggaatgatgagaaa 192
Query: 440 tctgaaaagaagcagaagcgcgagcatcaccatgatg 476
||||||||||||||||||| ||||| ||||| ||||
Sbjct: 193 cctgaaaagaagcagaagcgtgagcagcaccacgatg 229
Score = 101 bits (51), Expect = 5e-020
Identities = 126/151 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 318 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 377
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || |||||||| ||
Sbjct: 378 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaggaagt 437
Query: 691 tcggatgatcgaggcgaagcctgggattgct 721
||||||||||| || |||||||| ||||||
Sbjct: 438 gcggatgatcgaagcaaagcctggtattgct 468
>gb|BJ548991.1|BJ548991 BJ548991 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40p14 3', mRNA sequence
Length = 612
Score = 172 bits (87), Expect = 2e-041
Identities = 135/151 (89%)
Strand = Plus / Minus
Query: 326 cccttctatgacaaaactatgagaattcaatatgccaagaccaaatcagatattatagca 385
||||||||||||||| | |||| ||||||||||||||||||||| |||||| || |||||
Sbjct: 598 cccttctatgacaaacccatgaaaattcaatatgccaagaccaagtcagatgttgtagca 539
Query: 386 aaggctgatggcacctttgtacctcgagaaagaagaaagaggactgatgaaaaatctgaa 445
|| |||||||||||||| ||||||||||||| ||| ||||||| |||||| ||| |||||
Sbjct: 538 aaagctgatggcaccttcgtacctcgagaaaaaaggaagaggaatgatgagaaacctgaa 479
Query: 446 aagaagcagaagcgcgagcatcaccatgatg 476
|||||||||||||| ||||| ||||| ||||
Sbjct: 478 aagaagcagaagcgtgagcagcaccacgatg 448
Score = 137 bits (69), Expect = 9e-031
Identities = 212/259 (81%), Gaps = 3/259 (1%)
Strand = Plus / Minus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 359 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 300
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || |||||||| ||
Sbjct: 299 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaggaagt 240
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
||||||||||| || |||||||| |||||||| |||||||||||||||||| |||||
Sbjct: 239 gcggatgatcgaagcaaagcctggtattgcttttgtggagtatggagacgagggacaggc 180
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| || ||||||||| ||||| | |||||||| ||||| |||| ||| |||
Sbjct: 179 gaccgcagccatgaaccttcttcagggtttcaaaat---caaagagaacccaatgcgcat 123
Query: 811 cacatatgcgaagaagtaa 829
|||||||||||||||||||
Sbjct: 122 cacatatgcgaagaagtaa 104
>gb|BF623183.2|BF623183 HVSMEa0015A20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015A20f, mRNA sequence
Length = 830
Score = 165 bits (83), Expect = 4e-039
Identities = 134/151 (88%)
Strand = Plus / Plus
Query: 326 cccttctatgacaaaactatgagaattcaatatgccaagaccaaatcagatattatagca 385
||||||||||||||| | |||| ||||||||||||||||||||| ||| || || |||||
Sbjct: 307 cccttctatgacaaacccatgaaaattcaatatgccaagaccaagtcaaatgttgtagca 366
Query: 386 aaggctgatggcacctttgtacctcgagaaagaagaaagaggactgatgaaaaatctgaa 445
|| |||||||||||||| ||||||||||||| ||| ||||||| |||||| ||| |||||
Sbjct: 367 aaagctgatggcaccttcgtacctcgagaaaaaaggaagaggaatgatgacaaacctgaa 426
Query: 446 aagaagcagaagcgcgagcatcaccatgatg 476
|||||||||||||| ||||| ||||| ||||
Sbjct: 427 aagaagcagaagcgtgagcagcaccacgatg 457
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 572 gtcatgatgccagagattatcgtaccaaaca 602
|||||||||||||| ||||| ||||||||||
Sbjct: 547 gtcatgatgccagatattattgtaccaaaca 577
>gb|AL501018.1|AL501018 AL501018 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02L23u 3', mRNA sequence
Length = 658
Score = 137 bits (69), Expect = 9e-031
Identities = 212/259 (81%), Gaps = 3/259 (1%)
Strand = Plus / Minus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 508 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 449
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || |||||||| ||
Sbjct: 448 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaggaagt 389
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
||||||||||| || |||||||| |||||||| |||||||||||||||||| |||||
Sbjct: 388 gcggatgatcgaagcaaagcctggtattgcttttgtggagtatggagacgagggacaggc 329
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| || ||||||||| ||||| | |||||||| ||||| |||| ||| |||
Sbjct: 328 gaccgcagccatgaaccttcttcagggtttcaaaat---caaagagaacccaatgcgcat 272
Query: 811 cacatatgcgaagaagtaa 829
|||||||||||||||||||
Sbjct: 271 cacatatgcgaagaagtaa 253
>gb|CA001055.1|CA001055 HS05J13u HS Hordeum vulgare subsp. vulgare cDNA clone HS05J13
3-PRIME, mRNA sequence
Length = 502
Score = 137 bits (69), Expect = 9e-031
Identities = 212/259 (81%), Gaps = 3/259 (1%)
Strand = Plus / Minus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
||||||||||||||||||||| ||||||||||| || | || |||||| | | |||||
Sbjct: 384 ggtcatgatgccagagattattgtaccaaacaatattctcttcgtccaagaactcccaca 325
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
||| |||| | ||||||| |||||| |||||||||||||||| || |||||||| ||
Sbjct: 324 cgacgcgaccgctttgatgctgcagatgttcttctgccagtacccagggttcaaggaagt 265
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
||||||||||| || |||||||| |||||||| |||||||||||||||||| |||||
Sbjct: 264 gcggatgatcgaagcaaagcctggtattgcttttgtggagtatggagacgagggacaggc 205
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| || ||||||||| ||||| | |||||||| ||||| |||| ||| |||
Sbjct: 204 gaccgcagccatgaaccttcttcagggtttcaaaat---caaagagaacccaatgcgcat 148
Query: 811 cacatatgcgaagaagtaa 829
|||||||||||||||||||
Sbjct: 147 cacatatgcgaagaagtaa 129
>gb|AV920834.1|AV920834 AV920834 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15m05 3', mRNA sequence
Length = 560
Score = 67.9 bits (34), Expect = 7e-010
Identities = 109/134 (81%)
Strand = Plus / Minus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| |||||||| || |||||||| | ||||||||||||| || ||| || ||||
Sbjct: 313 tccagaacttgccggaccagacgacgagcgtgatgctccagatcctgttccagcaatacc 254
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
|||| ||| |||||| ||||||||||| || ||||| || |||||||| ||||||||||
Sbjct: 253 ctggtttccgggaggtgcggatgatcgaagccaagccaggcattgcttttgtggagtatg 194
Query: 735 gagacgagacccag 748
||||||| ||||
Sbjct: 193 aggacgagaaccag 180
>gb|BM368467.2|BM368467 EBem08_SQ002_G06_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_G06 5', mRNA sequence
Length = 505
Score = 67.9 bits (34), Expect = 7e-010
Identities = 109/134 (81%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| |||||||| || |||||||| | ||||||||||||| || ||| || ||||
Sbjct: 278 tccagaacttgccggaccagacgacgagcgtgatgctccagatcctgttccagcaatacc 337
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
|||| ||| |||||| ||||||||||| || ||||| || |||||||| ||||||||||
Sbjct: 338 ctggtttccgggaggtgcggatgatcgaagccaagccaggcattgcttttgtggagtatg 397
Query: 735 gagacgagacccag 748
||||||| ||||
Sbjct: 398 aggacgagaaccag 411
>gb|CA000585.1|CA000585 HS08C04u HS Hordeum vulgare subsp. vulgare cDNA clone HS08C04
3-PRIME, mRNA sequence
Length = 468
Score = 67.9 bits (34), Expect = 7e-010
Identities = 109/134 (81%)
Strand = Plus / Minus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| |||||||| || |||||||| | ||||||||||||| || ||| || ||||
Sbjct: 363 tccagaacttgccggaccagacgacgagcgtgatgctccagatcctgttccagcaatacc 304
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
|||| ||| |||||| ||||||||||| || ||||| || |||||||| ||||||||||
Sbjct: 303 ctggtttccgggaggtgcggatgatcgaagccaagccaggcattgcttttgtggagtatg 244
Query: 735 gagacgagacccag 748
||||||| ||||
Sbjct: 243 aggacgagaaccag 230
>gb|BM816160.1|BM816160 HC108D03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D03_SK.ab1 similar to (AC067971) Strong similarity
to a small nuclear ribonucleoprotein U2B'' - potato from
Solanum tuberosum gb|M72892. It contains an RNA
recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene. [Arabidopsis thaliana],
mRNA sequence
Length = 881
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| |||||||| || |||||||| | ||||||||||||| || ||| || ||||
Sbjct: 571 tccagaacttgccggaccagacgacgagcgtgatgctccagatcctgttccagcaatacc 630
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
|||| ||| |||||| ||||||||||| || ||||| || |||||||| ||||||||||
Sbjct: 631 ctggtttccgggaggtgcggatgatcgaagccaagccaggcattgcttttgtggagtatg 690
>gb|BM816161.1|BM816161 HC108D04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D04_SK.ab1 similar to (AC067971) Strong similarity
to a small nuclear ribonucleoprotein U2B'' - potato from
Solanum tuberosum gb|M72892. It contains an RNA
recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene. [Arabidopsis thaliana],
mRNA sequence
Length = 929
Score = 44.1 bits (22), Expect = 0.010
Identities = 106/134 (79%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| |||||||| || |||||||| | ||||||||||||| || ||| || ||||
Sbjct: 572 tccagaacttgccggaccagacgacgagcgtgatgctccagatcctgttccagcaatacc 631
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatg 734
|||| ||| |||||| ||||||||||| || |||| || |||||||| | |||||||
Sbjct: 632 ctggtttccgggaggtgcggatgatcgaagcccagccaggcattgcttttggtgagtatg 691
Query: 735 gagacgagacccag 748
||||||| ||||
Sbjct: 692 aggacgagaaccag 705
>gb|CV063171.1|CV063171 BNEL87d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87d4 5' similar to putative
dihydrolipoamide acetyltransferase, mRNA sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 199 tttttcccagtttgggaaaattcttg 224
|||||||||||||||||||| |||||
Sbjct: 700 tttttcccagtttgggaaaagtcttg 725
>gb|AL503025.1|AL503025 AL503025 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H18u 3', mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.038
Identities = 55/65 (84%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 685 ggaggttcggatgatcgaggcgaag-cctgggattgctttcgtggagtatggagacgaga 743
|||||| ||||||||||| || ||| || || |||||||| |||||||||| |||||||
Sbjct: 483 ggaggtgcggatgatcgaagccaagcccaggcattgcttttgtggagtatgaggacgaga 424
Query: 744 cccag 748
||||
Sbjct: 423 accag 419
>gb|BG368092.2|BG368092 HVSMEi0015K01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015K01f, mRNA sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 297 ctgaggctctgaagaggatg 316
||||||||||||||||||||
Sbjct: 372 ctgaggctctgaagaggatg 391
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,009
Number of Sequences: 312970
Number of extensions: 113009
Number of successful extensions: 32637
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32558
Number of HSP's gapped (non-prelim): 77
length of query: 1096
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1077
effective length of database: 169,188,109
effective search space: 182215593393
effective search space used: 182215593393
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)