BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 232 1e-059
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 232 1e-059
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 232 1e-059
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 232 1e-059
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 232 1e-059
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 232 1e-059
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 232 1e-059
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 230 4e-059
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 202 1e-050
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 196 6e-049
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 184 2e-045
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 180 4e-044
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 180 4e-044
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 172 9e-042
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 165 2e-039
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 163 8e-039
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 163 8e-039
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 155 2e-036
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 155 2e-036
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 155 2e-036
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 155 2e-036
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 155 2e-036
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 155 2e-036
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 155 2e-036
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 151 3e-035
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 143 8e-033
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 141 3e-032
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 135 2e-030
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 135 2e-030
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 133 8e-030
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 125 2e-027
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 123 7e-027
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 123 7e-027
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 121 3e-026
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 121 3e-026
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 119 1e-025
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 117 4e-025
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 117 4e-025
gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. v... 117 4e-025
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 117 4e-025
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 113 7e-024
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 111 3e-023
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 109 1e-022
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 107 4e-022
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 105 2e-021
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 105 2e-021
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 105 2e-021
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 103 7e-021
gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedl... 101 3e-020
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 101 3e-020
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 101 3e-020
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 101 3e-020
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 100 1e-019
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 98 4e-019
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 96 2e-018
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 96 2e-018
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 96 2e-018
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 92 3e-017
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 92 3e-017
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 92 3e-017
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 90 1e-016
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 90 1e-016
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 88 4e-016
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 86 2e-015
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 80 1e-013
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 80 1e-013
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 80 1e-013
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 78 4e-013
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 78 4e-013
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 78 4e-013
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 76 2e-012
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 76 2e-012
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 76 2e-012
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 76 2e-012
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 76 2e-012
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 76 2e-012
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 76 2e-012
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 76 2e-012
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 76 2e-012
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 76 2e-012
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 76 2e-012
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 76 2e-012
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 76 2e-012
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 76 2e-012
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 76 2e-012
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 74 6e-012
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 74 6e-012
gb|AJ462525.1|AJ462525 AJ462525 S00002 Hordeum vulgare subs... 72 2e-011
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 72 2e-011
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 70 9e-011
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 70 9e-011
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 70 9e-011
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 70 9e-011
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 70 9e-011
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 70 9e-011
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 70 9e-011
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 68 4e-010
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 66 1e-009
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 64 6e-009
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 64 6e-009
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 64 6e-009
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 64 6e-009
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 64 6e-009
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 64 6e-009
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 62 2e-008
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 62 2e-008
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 62 2e-008
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 62 2e-008
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 62 2e-008
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 62 2e-008
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 60 9e-008
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 58 4e-007
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 58 4e-007
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 58 4e-007
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 58 4e-007
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 58 4e-007
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 56 1e-006
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 54 6e-006
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 54 6e-006
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 54 6e-006
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 54 6e-006
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 54 6e-006
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 48 3e-004
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 48 3e-004
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 48 3e-004
gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedl... 46 0.001
gb|BI956518.1|BI956518 HVSMEn0003O09f Hordeum vulgare rachi... 46 0.001
gb|BI957226.1|BI957226 HVSMEn0008D17f Hordeum vulgare rachi... 46 0.001
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 46 0.001
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 46 0.001
gb|BG300504.2|BG300504 HVSMEb0017E15f Hordeum vulgare seedl... 46 0.001
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 46 0.001
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 46 0.001
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 46 0.001
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 46 0.001
gb|BE421602.1|BE421602 HWM011cF.07r ITEC HWM Barley Leaf Li... 44 0.005
gb|BI954215.1|BI954215 HVSMEm0016K09f Hordeum vulgare green... 44 0.005
gb|BI958795.1|BI958795 HVSMEn0016K11f Hordeum vulgare rachi... 44 0.005
gb|BQ664448.1|BQ664448 HV03F01u HV Hordeum vulgare subsp. v... 44 0.005
gb|CA016939.1|CA016939 HV05K21u HV Hordeum vulgare subsp. v... 44 0.005
gb|CA020830.1|CA020830 HZ37P09r HZ Hordeum vulgare subsp. v... 44 0.005
gb|BE420928.1|BE420928 HWM004.A05 ITEC HWM Barley Leaf Libr... 42 0.021
gb|BE421224.1|BE421224 HWM007.B01 ITEC HWM Barley Leaf Libr... 42 0.021
gb|BE421575.1|BE421575 HWM011cD.01r ITEC HWM Barley Leaf Li... 42 0.021
gb|BE421809.1|BE421809 HWM014cH.08r ITEC HWM Barley Leaf Li... 42 0.021
gb|BE421968.1|BE421968 HWM017cF.08r ITEC HWM Barley Leaf Li... 42 0.021
gb|BF623529.1|BF623529 HVSMEa0002J11f Hordeum vulgare seedl... 42 0.021
gb|BG299879.1|BG299879 HVSMEa0022F04f Hordeum vulgare seedl... 42 0.021
gb|BG300610.1|BG300610 HVSMEb0017L02f Hordeum vulgare seedl... 42 0.021
gb|BM816222.1|BM816222 HB107E06_SK.ab1 HB Hordeum vulgare s... 42 0.021
gb|BU980244.1|BU980244 HA20B20r HA Hordeum vulgare subsp. v... 42 0.021
gb|CB858245.1|CB858245 HI06E22w HI Hordeum vulgare subsp. v... 42 0.021
gb|BE420644.1|BE420644 HWM001.A09 ITEC HWM Barley Leaf Libr... 40 0.084
gb|BE420833.1|BE420833 HWM003.A06 ITEC HWM Barley Leaf Libr... 40 0.084
gb|BE420943.1|BE420943 HWM004.B08 ITEC HWM Barley Leaf Libr... 40 0.084
gb|BE421103.1|BE421103 HWM005.G12 ITEC HWM Barley Leaf Libr... 40 0.084
gb|BE421329.1|BE421329 HWM008.B10 ITEC HWM Barley Leaf Libr... 40 0.084
gb|BE421722.1|BE421722 HWM013cE.11r ITEC HWM Barley Leaf Li... 40 0.084
gb|AL506212.1|AL506212 AL506212 Hordeum vulgare Barke devel... 40 0.084
gb|AL507360.1|AL507360 AL507360 Hordeum vulgare Barke devel... 40 0.084
gb|BF623497.1|BF623497 HVSMEa0002H03f Hordeum vulgare seedl... 40 0.084
gb|BG300586.1|BG300586 HVSMEb0017J14f Hordeum vulgare seedl... 40 0.084
gb|BI948490.1|BI948490 HVSMEl0009M22f Hordeum vulgare spike... 40 0.084
gb|AV912397.1|AV912397 AV912397 K. Sato unpublished cDNA li... 40 0.084
gb|BM816065.1|BM816065 HB108E06_SK.ab1 HB Hordeum vulgare s... 40 0.084
gb|BM816203.1|BM816203 HB108D06_SK.ab1 HB Hordeum vulgare s... 40 0.084
gb|BM816428.1|BM816428 HB108G08_SK.ab1 HB Hordeum vulgare s... 40 0.084
gb|BM816590.1|BM816590 HC113D11_SK.ab1 HC Hordeum vulgare s... 40 0.084
gb|BM816970.1|BM816970 HB107D04_SK.ab1 HB Hordeum vulgare s... 40 0.084
gb|BM817125.1|BM817125 HC110B06_T3.ab1 HC Hordeum vulgare s... 40 0.084
gb|BM817157.1|BM817157 HC109G06_T3.ab1 HC Hordeum vulgare s... 40 0.084
gb|BM817311.1|BM817311 HC105C05_T3.ab1 HC Hordeum vulgare s... 40 0.084
gb|BM817419.1|BM817419 HC105A12_T3.ab1 HC Hordeum vulgare s... 40 0.084
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 40 0.084
gb|BM099257.2|BM099257 EBes01_SQ002_L07_R embryo sac, 4-6 D... 40 0.084
gb|CB881388.1|CB881388 HM09K14w HM Hordeum vulgare subsp. v... 40 0.084
gb|CB881815.1|CB881815 HM10P07w HM Hordeum vulgare subsp. v... 40 0.084
gb|CB882255.1|CB882255 HL01F14w HL Hordeum vulgare subsp. v... 40 0.084
gb|BE420605.1|BE420605 HWM000.F06 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE420776.1|BE420776 HWM002.D09 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE420809.1|BE420809 HWM002.G06 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE421078.1|BE421078 HWM005.E11 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE421409.1|BE421409 HWM009.A06 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE421455.1|BE421455 HWM009.E04 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE421574.1|BE421574 HWM011cC.12r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421597.1|BE421597 HWM011cF.01r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421601.1|BE421601 HWM011cF.06r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421735.1|BE421735 HWM013cG.06r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421777.1|BE421777 HWM014cD.08r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421824.1|BE421824 HWM015cB.02r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421827.1|BE421827 HWM015cB.05r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE421982.1|BE421982 HWM018cA.01r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE422045.1|BE422045 HWM019cD.01r ITEC HWM Barley Leaf Li... 38 0.33
gb|BE422132.1|BE422132 HWM020cD.04r ITEC HWM Barley Leaf Li... 38 0.33
gb|BF621235.1|BF621235 HVSMEa0006C10f Hordeum vulgare seedl... 38 0.33
gb|BF622142.1|BF622142 HVSMEa0002E08f Hordeum vulgare seedl... 38 0.33
gb|BF622354.1|BF622354 HVSMEa0002O16f Hordeum vulgare seedl... 38 0.33
gb|BF622508.1|BF622508 HVSMEa0004K14f Hordeum vulgare seedl... 38 0.33
gb|BF623479.1|BF623479 HVSMEa0002F09f Hordeum vulgare seedl... 38 0.33
gb|BF623774.1|BF623774 HVSMEa0005M09f Hordeum vulgare seedl... 38 0.33
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 38 0.33
gb|BF630217.1|BF630217 HVSMEb0008G12f Hordeum vulgare seedl... 38 0.33
gb|BG300057.1|BG300057 HVSMEb0011D12f Hordeum vulgare seedl... 38 0.33
gb|BG300566.1|BG300566 HVSMEb0017I06f Hordeum vulgare seedl... 38 0.33
gb|BG300644.1|BG300644 HVSMEb0017N02f Hordeum vulgare seedl... 38 0.33
gb|BI956468.1|BI956468 HVSMEn0003I18f Hordeum vulgare rachi... 38 0.33
gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachi... 38 0.33
gb|BF263446.1|BF263446 HV_CEa0006M07f Hordeum vulgare seedl... 38 0.33
gb|BF266377.1|BF266377 HV_CEa0014P15f Hordeum vulgare seedl... 38 0.33
gb|BF267055.1|BF267055 HV_CEa0016N02f Hordeum vulgare seedl... 38 0.33
gb|BF267240.1|BF267240 HV_CEa0017F15f Hordeum vulgare seedl... 38 0.33
gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachi... 38 0.33
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 38 0.33
gb|BG415999.2|BG415999 HVSMEk0009F17f Hordeum vulgare testa... 38 0.33
gb|AV913724.1|AV913724 AV913724 K. Sato unpublished cDNA li... 38 0.33
gb|AV919502.1|AV919502 AV919502 K. Sato unpublished cDNA li... 38 0.33
gb|AV923735.1|AV923735 AV923735 K. Sato unpublished cDNA li... 38 0.33
gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816001.1|BM816001 HB105H02_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816107.1|BM816107 HC111F06_T3.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM816231.1|BM816231 HC107F02_SK.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM816321.1|BM816321 HB108C05_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816322.1|BM816322 HB107B06_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816475.1|BM816475 HC114G07_SK.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM816639.1|BM816639 HC112D07_T3.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM816646.1|BM816646 HB106F07_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816852.1|BM816852 HB105C01_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816863.1|BM816863 HB105D09_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM816879.1|BM816879 HB105F10_SK.ab1 HB Hordeum vulgare s... 38 0.33
gb|BM817081.1|BM817081 HC110E01_T3.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM817155.1|BM817155 HC109G12_T3.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM817198.1|BM817198 HC109D08_T3.ab1 HC Hordeum vulgare s... 38 0.33
gb|BM817412.1|BM817412 HC113G11_SK.ab1 HC Hordeum vulgare s... 38 0.33
gb|BQ459227.1|BQ459227 HA01O20r HA Hordeum vulgare subsp. v... 38 0.33
gb|BQ467642.1|BQ467642 HS04G18r HS Hordeum vulgare subsp. v... 38 0.33
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 38 0.33
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 38 0.33
gb|BQ657386.1|BQ657386 HA08J01u HA Hordeum vulgare subsp. v... 38 0.33
gb|BQ765705.1|BQ765705 EBro03_SQ007_N21_R root, 3 week, wat... 38 0.33
gb|BU983754.1|BU983754 HA30O22r HA Hordeum vulgare subsp. v... 38 0.33
gb|BU999482.1|BU999482 HI14K11r HI Hordeum vulgare subsp. v... 38 0.33
gb|CA004554.1|CA004554 HS17P08r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA004842.1|CA004842 HS18N14r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA015431.1|CA015431 HT14E18r HT Hordeum vulgare subsp. v... 38 0.33
gb|CA017577.1|CA017577 HV05J17r HV Hordeum vulgare subsp. v... 38 0.33
gb|CA018998.1|CA018998 HV10G08r HV Hordeum vulgare subsp. v... 38 0.33
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 38 0.33
gb|CB859145.1|CB859145 HI09H23w HI Hordeum vulgare subsp. v... 38 0.33
gb|CB874872.1|CB874872 HX06J04w HX Hordeum vulgare subsp. v... 38 0.33
gb|CB880780.1|CB880780 HM07M21w HM Hordeum vulgare subsp. v... 38 0.33
gb|CB881136.1|CB881136 HM08O03w HM Hordeum vulgare subsp. v... 38 0.33
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 38 0.33
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 38 0.33
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 38 0.33
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 9 atcaccgacatgaactactacccgg---tggcgccctaccacttcgacctcagcggcacc 65
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 66 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 125
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 126 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 185
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 186 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 245
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || || |||||||||||||||
Sbjct: 246 gacgtggtgcacgtcgacctcatggag 272
Score = 42.1 bits (21), Expect = 0.021
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcct 387
|||| ||||||||||||||||||||
Sbjct: 319 agtcgtggggatccatctggcgcct 343
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 185 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 241
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 242 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 301
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 302 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 361
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 362 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 421
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || ||||||||||||||||||
Sbjct: 422 gacgtggtgcaggtcgacctcatggag 448
Score = 79.8 bits (40), Expect = 1e-013
Identities = 94/112 (83%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||||| |||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 495 agtcgtggggattcatctggcgcctcgactccaaccatcgtctacaggcgccattctcca 554
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatccc 474
|||||| ||||| ||| ||||| ||||||| || || ||| | ||||||||
Sbjct: 555 tccgcatccgcaacgagtccgggcagacgcttgtagcccgctaagtcatccc 606
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 232 bits (117), Expect = 1e-059
Identities = 207/237 (87%)
Strand = Plus / Plus
Query: 95 gcgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgc 154
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 26 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 85
Query: 155 aacgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgag 214
|||||||| || || | ||||||||||||||||||||||||| ||||||| | ||||||
Sbjct: 86 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 145
Query: 215 ttcccaggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgcc 274
||||| || || ||||| || |||||||| ||||| || |||| | ||| ||| | ||
Sbjct: 146 ttcccggggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtacatggcg 205
Query: 275 gtgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 206 atcctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggag 262
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 46 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 102
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 103 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 162
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 163 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 222
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 223 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 282
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || ||||||||||||||||||
Sbjct: 283 gacgtggtgcaggtcgacctcatggag 309
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 356 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 415
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 416 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 475
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 476 ggaggcccaacaccttctaccgctccatcgtccagtac 513
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 206 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 262
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 263 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 322
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 323 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 382
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 383 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 442
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || ||||||||||||||||||
Sbjct: 443 gacgtggtgcaggtcgacctcatggag 469
Score = 103 bits (52), Expect = 7e-021
Identities = 95/108 (87%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 363 agtcatggggatccat-ctggcgcctcgactccaaccaccgcctgcagccacccttctcc 421
|||| ||||||||||| ||||||||||||||||||||| || || ||| | || ||||||
Sbjct: 516 agtcgtggggatccattctggcgcctcgactccaaccatcgtctccaggcgccattctcc 575
Query: 422 atccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtc 469
||||||| ||||| ||| |||||||||||||||||||| ||| |||||
Sbjct: 576 atccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtc 623
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 289 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 345
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 346 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 405
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 406 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 465
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 466 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 525
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || ||||||||||||||||||
Sbjct: 526 gacgtggtgcaggtcgacctcatggag 552
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 232 bits (117), Expect = 1e-059
Identities = 230/267 (86%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 241 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 297
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 298 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 357
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 358 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 417
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 418 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 477
Query: 305 gacgtcgtccaggtcgacctcatggag 331
||||| || ||||||||||||||||||
Sbjct: 478 gacgtggtgcaggtcgacctcatggag 504
Score = 131 bits (66), Expect = 3e-029
Identities = 136/159 (85%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 551 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 610
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcat-cccactcaac 481
|||||| ||||| ||| ||||| |||||||||||||| ||| ||||||| ||| |||
Sbjct: 611 tccgcatccgcaacgagtccggnaagacgctcgtcgcccgcaacgtcatccccnaaaaac 670
Query: 482 tggaggccaaacacattctacagatccatcgtccagtac 520
|||||| | ||||| |||||| | |||||||||||||||
Sbjct: 671 tggaggnccaacaccttctaccgctccatcgtccagtac 709
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 230 bits (116), Expect = 4e-059
Identities = 229/266 (86%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 358 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 414
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 415 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 474
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 475 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 534
Query: 245 gaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacggc 304
||||| || |||| | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct: 535 gaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacggc 594
Query: 305 gacgtcgtccaggtcgacctcatgga 330
||||| || |||||||||||||||||
Sbjct: 595 gacgtggtgcaggtcgacctcatgga 620
Score = 63.9 bits (32), Expect = 6e-009
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||||||||||||| ||||||||||||| | || || ||| || || ||||
Sbjct: 670 agtcgtggggatccatctggggcctcgactccaanaatcgtctccaggngccattntcca 729
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtc 469
|||||| ||||| ||| ||||| |||| |||| |||| ||| |||||
Sbjct: 730 tccgcatccgcaacgagtccggnaagaagctcntcgcccgcaacgtc 776
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 202 bits (102), Expect = 1e-050
Identities = 248/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 95 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 151
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 152 cgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggctca 211
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagt 215
||||| || |||| | ||||||||||||||||| ||||| | |||| || |||||||
Sbjct: 212 acgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcgagt 271
Query: 216 tcccaggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgccg 275
|||| || |||||| |||| |||||||| ||||| ||| | || ||||||||||| |
Sbjct: 272 tcccggggctcaagatcgggttccacgtggaggagtactcgaaccccgtctacttcgcgg 331
Query: 276 tgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 332 tgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctcatggag 387
Score = 123 bits (62), Expect = 7e-027
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||| |||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 428 agtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcca 487
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| | | |||||||| |||||
Sbjct: 488 tccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaact 547
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | ||| |||| ||||||
Sbjct: 548 ggaggcccaacaccttctaccgctccttcgtgcagtac 585
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 196 bits (99), Expect = 6e-049
Identities = 227/269 (84%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 63 tcatcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggca 122
|||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 5 tcatcaccgacatgaactactacccgg---tggcgccctaccacttcgacctcagcggca 61
Query: 123 ccgccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatca 182
| || ||||||||||| || |||||||| | ||||||| || |||| | |||||||||
Sbjct: 62 cggcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatca 121
Query: 183 tcgacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacg 242
|||||||| ||||| | |||| || ||||||||||| || |||||| |||| |||||||
Sbjct: 122 tcgacatcgagttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccacg 181
Query: 243 tcgaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgacg 302
| ||||| ||| | || ||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 182 tggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgacg 241
Query: 303 gcgacgtcgtccaggtcgacctcatggag 331
||||||| || ||||| ||||||||||||
Sbjct: 242 gcgacgtggtgcaggtggacctcatggag 270
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 184 bits (93), Expect = 2e-045
Identities = 201/237 (84%)
Strand = Plus / Plus
Query: 95 gcgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgc 154
||||||||||||||||||||||||||||| || ||||||||||| || |||||||| | |
Sbjct: 23 gcgccctaccacttcgacctcagcggcacggcgttcggcaggctcgcaaagcccgggctc 82
Query: 155 aacgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgag 214
|||||| || |||| | ||||||||||||||||| ||||| | |||| || ||||||
Sbjct: 83 aacgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcgag 142
Query: 215 ttcccaggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgcc 274
||||| || |||||| |||| |||||||| ||||| ||| | || |||||||||||
Sbjct: 143 ttcccggggctcaagatcgggttccacgtggaggagtactcgaaccccgtctacttcgcg 202
Query: 275 gtgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 203 gtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctcatggag 259
Score = 123 bits (62), Expect = 7e-027
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||| |||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 300 agtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcca 359
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| | | |||||||| |||||
Sbjct: 360 tccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaact 419
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | ||| |||| ||||||
Sbjct: 420 ggaggcccaacaccttctaccgctccttcgtgcagtac 457
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 180 bits (91), Expect = 4e-044
Identities = 162/185 (87%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 506 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 562
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 563 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 622
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 623 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 682
Query: 245 gagga 249
|||||
Sbjct: 683 gagga 687
>gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
5-PRIME, mRNA sequence
Length = 648
Score = 180 bits (91), Expect = 4e-044
Identities = 162/185 (87%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 460 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 516
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 517 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 576
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| || || ||||| || ||||||||
Sbjct: 577 gacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgtg 636
Query: 245 gagga 249
|||||
Sbjct: 637 gagga 641
>gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P06
5-PRIME, mRNA sequence
Length = 495
Score = 172 bits (87), Expect = 9e-042
Identities = 161/185 (87%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 309 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 365
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 366 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 425
Query: 185 gacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccacgtc 244
|||||||||||| ||||||| | ||||||||||| | || ||||| || ||||||||
Sbjct: 426 gacatccagttcaccagggtggcgtgcgagttcccggagctgaaggtggggttccacgtg 485
Query: 245 gagga 249
|||||
Sbjct: 486 gagga 490
>gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. vulgare cDNA clone HA28I14
5-PRIME, mRNA sequence
Length = 417
Score = 165 bits (83), Expect = 2e-039
Identities = 113/123 (91%)
Strand = Plus / Plus
Query: 97 gccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaa 156
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 288 gccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgcaa 347
Query: 157 cgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagtt 216
|||||| || || | ||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 348 cgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgagtt 407
Query: 217 ccc 219
|||
Sbjct: 408 ccc 410
>gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A06
5-PRIME, mRNA sequence
Length = 421
Score = 163 bits (82), Expect = 8e-039
Identities = 126/140 (90%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 282 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 338
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 339 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 398
Query: 185 gacatccagttcgccagggt 204
|||||||||||| |||||||
Sbjct: 399 gacatccagttcaccagggt 418
>gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M109 5-PRIME, mRNA sequence
Length = 345
Score = 163 bits (82), Expect = 8e-039
Identities = 137/155 (88%), Gaps = 3/155 (1%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 187 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 243
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 244 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 303
Query: 185 gacatccagttcgccagggtaccctgcgagttccc 219
|||||||||||| |||||| | |||||||||||
Sbjct: 304 gacatccagttcaccagggnggcgtgcgagttccc 338
>gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F11f, mRNA sequence
Length = 759
Score = 155 bits (78), Expect = 2e-036
Identities = 125/140 (89%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || |||||||||||||| |||||||||||||||
Sbjct: 520 atcacggacatgaactactacccg---gtggcgccctaccacttggacctcagcggcacc 576
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatcatc 184
|||||||||| ||| ||||||||||||||||||||||| || || | |||||||||||||
Sbjct: 577 gccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatc 636
Query: 185 gacatccagttcgccagggt 204
|||||||||||| |||||||
Sbjct: 637 gacatccagttcaccagggt 656
>gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 3', mRNA sequence
Length = 601
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 596 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 537
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 536 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 477
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 476 ggaggcccaacaccttctaccgctccatcgtccagtac 439
>gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 3', mRNA sequence
Length = 498
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 491 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 432
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 431 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 372
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 371 ggaggcccaacaccttctaccgctccatcgtccagtac 334
>gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052C12F1, mRNA sequence
Length = 300
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 28 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 87
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 88 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 147
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 148 ggaggcccaacaccttctaccgctccatcgtccagtac 185
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 176 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 235
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 236 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 295
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 296 ggaggcccaacaccttctaccgctccatcgtccagtac 333
Score = 85.7 bits (43), Expect = 2e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 209 tgcgagttcccaggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctac 268
||||||||||| || || ||||| || |||||||| ||||| || |||| | ||| |||
Sbjct: 7 tgcgagttcccggggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtac 66
Query: 269 ttcgccgtgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatg 328
| || | ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 67 atggcgatcctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatg 126
Query: 329 gag 331
|||
Sbjct: 127 gag 129
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 366 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 307
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 306 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 247
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 246 ggaggcccaacaccttctaccgctccatcgtccagtac 209
Score = 121 bits (61), Expect = 3e-026
Identities = 133/157 (84%)
Strand = Plus / Minus
Query: 175 cggcatcatcgacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcgg 234
|||||||||||||||||||||| ||||||| | ||||||||||| || || ||||| ||
Sbjct: 569 cggcatcatcgacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggg 510
Query: 235 cttccacgtcgaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaa 294
|||||||| ||||| || |||| | ||| ||| | || | ||||| |||||||||||
Sbjct: 509 gttccacgtggaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaa 450
Query: 295 cggcgacggcgacgtcgtccaggtcgacctcatggag 331
||||||||||||||| || ||||||||||||||||||
Sbjct: 449 cggcgacggcgacgtggtgcaggtcgacctcatggag 413
>gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
3-PRIME, mRNA sequence
Length = 543
Score = 155 bits (78), Expect = 2e-036
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 536 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 477
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 476 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatccccaagaact 417
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | |||||||||||||||
Sbjct: 416 ggaggcccaacaccttctaccgctccatcgtccagtac 379
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 151 bits (76), Expect = 3e-035
Identities = 242/297 (81%), Gaps = 4/297 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 337 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 393
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 394 cgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggctca 453
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgc-cagggtaccctgcgag 214
||||| || |||| | ||||||||||||||||| ||||| | | |||| || || |||
Sbjct: 454 acgacaggctccgccactccggcatcatcgacatcgagttcacacggggtgccgtgggag 513
Query: 215 ttcccaggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgcc 274
||||| || |||||| |||| |||||||| | ||| ||| | || |||||||||||
Sbjct: 514 ttcccggggctcaagatcgggttccacgtggnggagtactcganccccgtctacttcgcg 573
Query: 275 gtgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|||||||| || || | |||||||||||||||| || ||||| |||||||||||
Sbjct: 574 gtgctggtggantancaagacggcgacggcgacgtggtgcaggtgnacctcatggag 630
>gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H04 5', mRNA sequence
Length = 612
Score = 143 bits (72), Expect = 8e-033
Identities = 179/214 (83%), Gaps = 3/214 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 387 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 443
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 444 cgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggctca 503
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagt 215
||||| || |||| | ||||||||||||||||| ||||| | |||| || |||||||
Sbjct: 504 acgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcgagt 563
Query: 216 tcccaggcctcaaggtcggcttccacgtcgagga 249
|||| || |||||| |||| |||||||| |||||
Sbjct: 564 tcccggggctcaagatcgggttccacgtggagga 597
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 141 bits (71), Expect = 3e-032
Identities = 191/231 (82%)
Strand = Plus / Plus
Query: 101 taccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaacgac 160
|||||||||||||| || |||||||| |||||| ||||||||||||||| || |||
Sbjct: 2 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 61
Query: 161 gacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagttccca 220
| || || | | ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 62 aagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttccct 121
Query: 221 ggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgccgtgctg 280
|| |||||||| ||||||||| ||| | || || | || ||| |||||||||||||||
Sbjct: 122 ggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgctg 181
Query: 281 gtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|| ||||||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 182 gtggagtacgaggacggcgacggcgacgtggtgcaggtggacctcatggag 232
Score = 69.9 bits (35), Expect = 9e-011
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 347 tggacgcccatgagccagtcatggggatccatctggcgcctcgactccaaccaccgcctg 406
|||||||| ||| || |||| |||||||| |||||||| || |||||| |||||||||
Sbjct: 248 tggacgccgatgcgcgagtcgtggggatcaatctggcggctggactccggccaccgcctc 307
Query: 407 cagccacccttctccatccgcacccgcaccgactccggcaagacgct 453
||| | ||||||||||| |||| | || ||| ||||||||||||||
Sbjct: 308 caggcgcccttctccatgcgcatcaccaacgagtccggcaagacgct 354
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 135 bits (68), Expect = 2e-030
Identities = 178/214 (83%), Gaps = 3/214 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||| ||||||||||||||| ||||| | |
Sbjct: 405 cctgctccggcaggacggagacggtgatcattaccgacatgaactactacccgg---tgg 461
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 462 cgccctaccacttcgacctcagcggcacggcgttcggcaggctcgcaaagcccgggctca 521
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagt 215
||||| || |||| | ||||||||||||||||| ||||| | |||| || |||||||
Sbjct: 522 acgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcgagt 581
Query: 216 tcccaggcctcaaggtcggcttccacgtcgagga 249
|||| || |||||| |||| |||||||| |||||
Sbjct: 582 tcccggggctcaagatcgggttccacgtggagga 615
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 135 bits (68), Expect = 2e-030
Identities = 183/220 (83%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 112 cctcagcggcaccgccttcggcaggctggccaagcccggccgcaacgacgacctgcgccg 171
|||||||||||| || ||||||||||| || |||||||| | ||||||| || ||||
Sbjct: 1 cctcagcggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgcca 60
Query: 172 cgccggcatcatcgacatccagttcgccagggtaccctgcgagttcccaggcctcaaggt 231
| ||||||||||||||||| |||| | |||| || ||||||||||| || |||||| |
Sbjct: 61 ctccggcatcatcgacatcgagttacac-gggtgccgtgcgagttcccggggctcaagat 119
Query: 232 cggcttccacgtcgaggaaggctccacccaggtctacttcgccgtgctggtcgagtacga 291
||| |||||||| ||||| ||| | || ||||||||||| |||||||| ||||||||
Sbjct: 120 cgggttccacgtggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacga 179
Query: 292 gaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 180 ggacggcgacggcgacgtggtgcaggtggacctcatggag 219
Score = 123 bits (62), Expect = 7e-027
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||| |||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 260 agtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcca 319
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| | | |||||||| |||||
Sbjct: 320 tccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaact 379
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | ||| |||| ||||||
Sbjct: 380 ggaggcccaacaccttctaccgctccttcgtgcagtac 417
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 133 bits (67), Expect = 8e-030
Identities = 190/231 (82%)
Strand = Plus / Plus
Query: 101 taccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaacgac 160
|||||||||||||| || |||||||| |||||| ||||||||||||||| || |||
Sbjct: 339 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 398
Query: 161 gacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagttccca 220
| || || | | ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 399 aagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttccct 458
Query: 221 ggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgccgtgctg 280
|| |||||||| ||||||||| ||| | || || | || ||| |||||||||||||||
Sbjct: 459 ggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgctg 518
Query: 281 gtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|| ||||||||| |||||||||||||| | || ||||| ||||||||||||
Sbjct: 519 gtggagtacgaggacggcgacggcgacttggtgcaggtggacctcatggag 569
>gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
3-PRIME, mRNA sequence
Length = 590
Score = 125 bits (63), Expect = 2e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 382 gcgcctcgactccaaccaccgcctgcagccacccttctccatccgcacccgcaccgactc 441
|||||||||||||||||| || || ||| | || ||||||||||||| ||||| ||| ||
Sbjct: 590 gcgcctcgactccaaccatcgtctccaggcgccattctccatccgcatccgcaacgagtc 531
Query: 442 cggcaagacgctcgtcgcacgcgacgtcatcccactcaactggaggccaaacacattcta 501
|||||||||||||||||| ||| |||||||||| ||||||||||| ||||| |||||
Sbjct: 530 cggcaagacgctcgtcgcccgcaacgtcatccccaagaactggaggcccaacaccttcta 471
Query: 502 cagatccatcgtccagtac 520
| | |||||||||||||||
Sbjct: 470 ccgctccatcgtccagtac 452
>gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014H23f, mRNA sequence
Length = 696
Score = 123 bits (62), Expect = 7e-027
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||| |||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 110 agtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcca 169
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| | | |||||||| |||||
Sbjct: 170 tccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaact 229
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | ||| |||| ||||||
Sbjct: 230 ggaggcccaacaccttctaccgctccttcgtgcagtac 267
Score = 73.8 bits (37), Expect = 6e-012
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 275 gtgctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 13 gtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctcatggag 69
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 123 bits (62), Expect = 7e-027
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||| |||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 191 agtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcca 250
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| |||||||||||||||||||| | | |||||||| |||||
Sbjct: 251 tccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaact 310
Query: 483 ggaggccaaacacattctacagatccatcgtccagtac 520
||||||| ||||| |||||| | ||| |||| ||||||
Sbjct: 311 ggaggcccaacaccttctaccgctccttcgtgcagtac 348
Score = 107 bits (54), Expect = 4e-022
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 182 atcgacatccagttcgccagggtaccctgcgagttcccaggcctcaaggtcggcttccac 241
||||||||| ||||| | |||| || ||||||||||| || |||||| |||| ||||||
Sbjct: 1 atcgacatcgagttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccac 60
Query: 242 gtcgaggaaggctccacccaggtctacttcgccgtgctggtcgagtacgagaacggcgac 301
|| ||||| ||| | || ||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 61 gtggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgac 120
Query: 302 ggcgacgtcgtccaggtcgacctcatggag 331
|||||||| || ||||| ||||||||||||
Sbjct: 121 ggcgacgtggtgcaggtggacctcatggag 150
>gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019J09f, mRNA sequence
Length = 564
Score = 121 bits (61), Expect = 3e-026
Identities = 130/153 (84%)
Strand = Plus / Plus
Query: 368 tggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctccatccgc 427
||||| ||| |||||||||||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 1 tggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctccatccgc 60
Query: 428 acccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaactggagg 487
| ||||| ||| |||||||||||||||||||| | | |||||||| ||||||||||
Sbjct: 61 atccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaactggagg 120
Query: 488 ccaaacacattctacagatccatcgtccagtac 520
|| ||||| |||||| | ||| |||| ||||||
Sbjct: 121 cccaacaccttctaccgctccttcgtgcagtac 153
>gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. vulgare cDNA clone HF25K12
5-PRIME, mRNA sequence
Length = 281
Score = 121 bits (61), Expect = 3e-026
Identities = 120/140 (85%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 136 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 195
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
|||||| ||||| ||| ||||||||||||||||||| ||| ||||||| || ||||
Sbjct: 196 tccgcatccgcaacgagtccggcaagacgctcgtcgnccgcaacgtcattcccaagaact 255
Query: 483 ggaggccaaacacattctac 502
||||||| ||||| ||||||
Sbjct: 256 ggaggcccaacaccttctac 275
Score = 83.8 bits (42), Expect = 6e-015
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 278 ctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 36 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggag 89
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 119 bits (60), Expect = 1e-025
Identities = 188/231 (81%)
Strand = Plus / Plus
Query: 101 taccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaacgac 160
|||||||||||||| || |||||||| |||||| ||||||||||||||| || |||
Sbjct: 322 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 381
Query: 161 gacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagttccca 220
| || || | | ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 382 aagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttccct 441
Query: 221 ggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgccgtgctg 280
|| |||||||| ||||||||| ||| | || || | || ||| |||||||||||||||
Sbjct: 442 ggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgctg 501
Query: 281 gtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
|| |||||||| |||||||||||||| | || || || ||||||||||||
Sbjct: 502 gtggagtacgangacggcgacggcgacatggtgcaagtggacctcatggag 552
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 117 bits (59), Expect = 4e-025
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 101 taccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaacgac 160
|||||||||||||| || |||||||| |||||| ||||||||||||||| || |||
Sbjct: 435 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 494
Query: 161 gacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagttccca 220
| || || | | ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 495 aagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttccct 554
Query: 221 ggcctcaaggtcggcttccacgtcgaggaaggctccacccaggtctacttcgccgtgctg 280
|| |||||||| ||||||||| ||| | || || | || ||| |||||||||||||||
Sbjct: 555 ggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgctg 614
Query: 281 gtcgagtacgagaacggcgacggcgac 307
|| ||||||||| ||||||||||||||
Sbjct: 615 gtggagtacgaggacggcgacggcgac 641
>gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_G24 5', mRNA sequence
Length = 535
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 378 tctggcgcctcgactccaaccaccgcctgcagccacccttctccatccgcacccgcaccg 437
|||||||||||||||||||||||||||| ||| | || ||||||||||||| ||||| ||
Sbjct: 7 tctggcgcctcgactccaaccaccgcctccaggcgccattctccatccgcatccgcaacg 66
Query: 438 actccggcaagacgctcgtcgcacgcgacgtcatcccactcaactggaggccaaacacat 497
| |||||||||||||||||||| | | |||||||| |||||||||||| ||||| |
Sbjct: 67 agtccggcaagacgctcgtcgccaacaaggtcatcccggccaactggaggcccaacacct 126
Query: 498 tctacagatccatcgtccagtac 520
||||| | ||| |||| ||||||
Sbjct: 127 tctaccgctccttcgtgcagtac 149
>gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60N21
5-PRIME, mRNA sequence
Length = 222
Score = 117 bits (59), Expect = 4e-025
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| |||||||||||||||||||||||||||||||| || || ||| | || |||||||
Sbjct: 116 agtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattctcca 175
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtc 469
|||||| ||||| ||| |||||||||||||||||||| ||| |||||
Sbjct: 176 tccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtc 222
Score = 83.8 bits (42), Expect = 6e-015
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 278 ctggtcgagtacgagaacggcgacggcgacgtcgtccaggtcgacctcatggag 331
||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 16 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggag 69
>gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01B01
3-PRIME, mRNA sequence
Length = 574
Score = 117 bits (59), Expect = 4e-025
Identities = 136/161 (84%), Gaps = 3/161 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 401 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 457
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 458 cgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggctca 517
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttc 196
||||| || |||| | ||||||||||||||||| |||||
Sbjct: 518 acgacaggctccgccactccggcatcatcgacatcgagttc 558
>gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_N05 5', mRNA sequence
Length = 625
Score = 113 bits (57), Expect = 7e-024
Identities = 134/159 (84%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 38 tgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcgcg 97
||||||||| | ||||||| || |||||||||||||||||||| ||||| ||||
Sbjct: 450 tgctccggcgaccccgagacggtgatcatcaccgacatgaactactacccgg---tcgcc 506
Query: 98 ccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgcaac 157
| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct: 507 cgctaccacttcgacctcagcggcactgccttcggcgccatggccaaagacggccgcaac 566
Query: 158 gacgacctgcgccgcgccggcatcatcgacatccagttc 196
||||| || |||| |||||||||||||||||| ||||||
Sbjct: 567 gacgagctccgccacgccggcatcatcgacatgcagttc 605
>gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200042D02F1, mRNA sequence
Length = 360
Score = 111 bits (56), Expect = 3e-023
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 389 gactccaaccaccgcctgcagccacccttctccatccgcacccgcaccgactccggcaag 448
||||||||||| || || ||| | || ||||||||||||| ||||| ||| |||||||||
Sbjct: 1 gactccaaccatcgtctccaggcgccattctccatccgcatccgcaacgagtccggcaag 60
Query: 449 acgctcgtcgcacgcgacgtcatcccactcaactggaggccaaacacattctacagatcc 508
||||||||||| ||| |||||||||| ||||||||||| ||||| |||||| | |||
Sbjct: 61 acgctcgtcgcccgcaacgtcatccccaagaactggaggcccaacaccttctaccgctcc 120
Query: 509 atcgtccagtac 520
||||||||||||
Sbjct: 121 atcgtccagtac 132
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 109 bits (55), Expect = 1e-022
Identities = 168/205 (81%), Gaps = 3/205 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 393 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 449
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||
Sbjct: 450 cgccctaccacttcgacctcagcggcacggcgttcggcaggctcgcaaagcccgggctca 509
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagt 215
||||| || || | | ||||||||||||||||| | ||| | |||| || |||||||
Sbjct: 510 acgacaggctccggcactccggcatcatcgacatcgaattcacacgggtgccgtgcgagt 569
Query: 216 tcccaggcctcaaggtcggcttcca 240
||| || |||||| |||| |||||
Sbjct: 570 tcctggggctcaagatcgggttcca 594
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 107 bits (54), Expect = 4e-022
Identities = 170/208 (81%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 36 cctgctccggccgcaccgagaccgtcgtcatcaccgacatgaactacaccccgggcgtcg 95
||||||||||| | || ||||| || |||||||||||||||||||| ||||| | |
Sbjct: 407 cctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccgg---tgg 463
Query: 96 cgccctaccacttcgacctcagcggcaccgccttcggcaggctggccaagcccggccgca 155
||||||||||||||||||| | |||||| || ||||||||||| || |||||| | | ||
Sbjct: 464 cgccctaccacttcgacctgaccggcacggcgttcggcaggctcgcaaagccccggctca 523
Query: 156 acgacgacctgcgccgcgccggcatcatcgacatccagttcgccagggtaccctgcgagt 215
||||| || |||| | ||||||||||||||||| ||||| | |||| || ||||| |
Sbjct: 524 acgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcgaat 583
Query: 216 tcccaggcctcaaggtcggcttccacgt 243
|||| || |||||| |||| ||||||||
Sbjct: 584 tcccggggctcaagatcgggttccacgt 611
>gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011O02f, mRNA sequence
Length = 600
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Plus
Query: 416 ttctccatccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatccca 475
||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 9 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatcccc 68
Query: 476 ctcaactggaggccaaacacattctacagatccatcgtccagtac 520
||||||||||| ||||| |||||| | |||||||||||||||
Sbjct: 69 aagaactggaggcccaacaccttctaccgctccatcgtccagtac 113
>gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200008F02F1, mRNA sequence
Length = 481
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Plus
Query: 416 ttctccatccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatccca 475
||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 7 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatcccc 66
Query: 476 ctcaactggaggccaaacacattctacagatccatcgtccagtac 520
||||||||||| ||||| |||||| | |||||||||||||||
Sbjct: 67 aagaactggaggcccaacaccttctaccgctccatcgtccagtac 111
>gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M15
3-PRIME, mRNA sequence
Length = 469
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 416 ttctccatccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatccca 475
||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 462 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgcccgcaacgtcatcccc 403
Query: 476 ctcaactggaggccaaacacattctacagatccatcgtccagtac 520
||||||||||| ||||| |||||| | |||||||||||||||
Sbjct: 402 aagaactggaggcccaacaccttctaccgctccatcgtccagtac 358
>gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024H07f, mRNA sequence
Length = 638
Score = 103 bits (52), Expect = 7e-021
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 65 atcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggcacc 124
||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 528 atcacggacatgaactactacccg---gtggcgccctaccacttcgacctcagcggcacc 584
Query: 125 gccttcggcaggctggccaagcccggccgcaacgacga 162
|||||||||| ||| |||||| || |||||||||||||
Sbjct: 585 gccttcggcaagctcgccaaggcccgccgcaacgacga 622
>gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009N16f, mRNA sequence
Length = 864
Score = 101 bits (51), Expect = 3e-020
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 360 gccagtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttct 419
||||||| |||||||||||||||||||||||||||||||| || || ||| | || ||||
Sbjct: 29 gccagtcgtggggatccatctggcgcctcgactccaaccatcgtctccaggcgccattct 88
Query: 420 ccatccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactca 479
|||| |||| |||| ||| | ||||||||||||||| || ||| ||||| |||| |
Sbjct: 89 ccatgcgcatgcgcaacgagtgcggcaagacgctcgtggcccgcaacgtcgtccccaaga 148
Query: 480 actggaggccaaacacattctac 502
|||||||||| ||||| ||||||
Sbjct: 149 actggaggcccaacaccttctac 171
>gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005K24f, mRNA sequence
Length = 812
Score = 101 bits (51), Expect = 3e-020
Identities = 115/134 (85%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 63 tcatcaccgacatgaactacaccccgggcgtcgcgccctaccacttcgacctcagcggca 122
|||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||
Sbjct: 254 tcatcaccgacatgaactactacccggt-gtcccgc--taccacttcgacctcagcggca 310
Query: 123 ccgccttcggcaggctggccaagcccggccgcaacgacgacctgcgccgcgccggcatca 182
||||||||||| |||||||| ||||| |||||||| || |||| |||||||||||
Sbjct: 311 ccgccttcggcgccatggccaaggacggccaaaacgacgagctccgccacgccggcatca 370
Query: 183 tcgacatccagttc 196
||||||| ||||||
Sbjct: 371 tcgacatgcagttc 384
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,645
Number of Sequences: 312970
Number of extensions: 107645
Number of successful extensions: 39846
Number of sequences better than 0.5: 257
Number of HSP's better than 0.5 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39218
Number of HSP's gapped (non-prelim): 499
length of query: 621
length of database: 175,134,539
effective HSP length: 19
effective length of query: 602
effective length of database: 169,188,109
effective search space: 101851241618
effective search space used: 101851241618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)