BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA025036.1|CA025036 HZ51A16r HZ Hordeum vulgare subsp. v... 559 e-158
gb|BU989594.1|BU989594 HF22C17r HF Hordeum vulgare subsp. v... 551 e-155
gb|BU986297.1|BU986297 HF11F11r HF Hordeum vulgare subsp. v... 549 e-155
gb|BQ472155.1|BQ472155 HV04J02r HV Hordeum vulgare subsp. v... 529 e-149
gb|BI958288.1|BI958288 HVSMEn0014E05f Hordeum vulgare rachi... 523 e-147
gb|BG418473.2|BG418473 HVSMEk0022N01f Hordeum vulgare testa... 521 e-146
gb|BM372329.2|BM372329 EBro03_SQ004_K14_R root, 3 week, wat... 521 e-146
gb|BF267575.2|BF267575 HV_CEa0018F03f Hordeum vulgare seedl... 513 e-144
gb|AV917182.1|AV917182 AV917182 K. Sato unpublished cDNA li... 488 e-136
gb|BG343506.2|BG343506 HVSMEg0005P06f Hordeum vulgare pre-a... 486 e-136
gb|CA028228.1|CA028228 HZ61G01r HZ Hordeum vulgare subsp. v... 468 e-130
gb|BF259611.2|BF259611 HVSMEf0019M16f Hordeum vulgare seedl... 452 e-125
gb|BQ460377.1|BQ460377 HA09O01r HA Hordeum vulgare subsp. v... 424 e-117
gb|AV919917.1|AV919917 AV919917 K. Sato unpublished cDNA li... 319 1e-085
gb|BI950683.1|BI950683 HVSMEl0022G13f Hordeum vulgare spike... 303 7e-081
gb|BQ759323.1|BQ759323 EBpi01_SQ004_N01_R pistil, 1 DPA, no... 281 3e-074
gb|BU981013.1|BU981013 HA22G03r HA Hordeum vulgare subsp. v... 256 1e-066
gb|BG416184.2|BG416184 HVSMEk0010D08f Hordeum vulgare testa... 242 2e-062
gb|BQ761625.1|BQ761625 EBem10_SQ001_G12_R embryo, 2 Day ger... 206 1e-051
gb|BQ657062.1|BQ657062 HA09O01u HA Hordeum vulgare subsp. v... 192 2e-047
gb|BJ466058.1|BJ466058 BJ466058 K. Sato unpublished cDNA li... 90 2e-016
gb|BG369473.1|BG369473 HVSMEi0024I17f Hordeum vulgare 20 DA... 40 0.16
gb|BI960674.1|BI960674 HVSMEn0025M02f Hordeum vulgare rachi... 40 0.16
gb|BQ462850.1|BQ462850 HI02D08r HI Hordeum vulgare subsp. v... 40 0.16
gb|BQ471111.1|BQ471111 HV01B03T HV Hordeum vulgare subsp. v... 40 0.16
gb|BM373222.2|BM373222 EBma04_SQ003_J14_R maternal, 10 DPA,... 40 0.16
gb|BM096784.2|BM096784 EBma07_SQ001_K03_R maternal, 21 DPA,... 40 0.16
gb|BM443408.2|BM443408 EBro02_SQ005_A08_R root, 3 week, hyd... 40 0.16
gb|BQ759659.1|BQ759659 EBpi05_SQ002_D17_R pistil, 8 DPA, no... 40 0.16
gb|BQ761165.1|BQ761165 EBro04_SQ004_G21_R root, 3 week, sal... 40 0.16
gb|BU997715.1|BU997715 HI08M19r HI Hordeum vulgare subsp. v... 40 0.16
gb|CA003291.1|CA003291 HS09P15r HS Hordeum vulgare subsp. v... 40 0.16
gb|CA026530.1|CA026530 HZ56C22r HZ Hordeum vulgare subsp. v... 40 0.16
gb|CV054417.1|CV054417 BNEL10C6 Barley EST endosperm librar... 40 0.16
gb|CV054819.1|CV054819 BNEL113f7 Barley EST endosperm libra... 40 0.16
gb|CV054907.1|CV054907 BNEL114f3 Barley EST endosperm libra... 40 0.16
gb|CV055721.1|CV055721 BNEL122g12 Barley EST endosperm libr... 40 0.16
gb|CV056802.1|CV056802 BNEL20g3 Barley EST endosperm librar... 40 0.16
gb|CV064283.1|CV064283 BNEL9B4 Barley EST endosperm library... 40 0.16
>gb|CA025036.1|CA025036 HZ51A16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51A16
5-PRIME, mRNA sequence
Length = 632
Score = 559 bits (282), Expect = e-158
Identities = 525/607 (86%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 21 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 80
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 81 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 140
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 141 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 200
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 201 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 260
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 261 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 320
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 321 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 380
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 381 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 440
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 441 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 500
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 501 tgttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatga 560
Query: 633 cttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaag 692
|| || ||||| || | ||||||||||| |||||||||||| | || || ||||| ||
Sbjct: 561 tttaatcgagacagggaggagtgagcaaattttcaaagatgctgttcagcagcaggggag 620
Query: 693 aggccag 699
|||||||
Sbjct: 621 aggccag 627
>gb|BU989594.1|BU989594 HF22C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF22C17
5-PRIME, mRNA sequence
Length = 626
Score = 551 bits (278), Expect = e-155
Identities = 506/583 (86%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 27 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 86
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 87 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 146
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 147 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 206
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 207 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 266
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 267 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 326
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 327 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 386
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 387 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 446
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 447 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 506
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 507 tgttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatga 566
Query: 633 cttgatagagaccggaaaaagtgagcaaatattcaaagatgct 675
|| || ||||| || | ||||||||||| ||||||||||||
Sbjct: 567 tttaatcgagacagggaggagtgagcaaattttcaaagatgct 609
>gb|BU986297.1|BU986297 HF11F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF11F11
5-PRIME, mRNA sequence
Length = 621
Score = 549 bits (277), Expect = e-155
Identities = 505/582 (86%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 40 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 99
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 100 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 159
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 160 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 219
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 220 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 279
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 280 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 339
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 340 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 399
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 400 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 459
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 460 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 519
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 520 tgttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatga 579
Query: 633 cttgatagagaccggaaaaagtgagcaaatattcaaagatgc 674
|| || ||||| || | ||||||||||| |||||||||||
Sbjct: 580 tttaatcgagacagggaggagtgagcaaattttcaaagatgc 621
>gb|BQ472155.1|BQ472155 HV04J02r HV Hordeum vulgare subsp. vulgare cDNA clone HV04J02
5-PRIME, mRNA sequence
Length = 565
Score = 529 bits (267), Expect = e-149
Identities = 471/540 (87%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 18 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 77
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 78 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 137
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 138 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 197
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 198 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 257
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 258 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 317
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 318 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 377
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 378 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 437
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 438 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 497
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 498 tgttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatga 557
>gb|BI958288.1|BI958288 HVSMEn0014E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014E05f, mRNA sequence
Length = 661
Score = 523 bits (264), Expect = e-147
Identities = 504/584 (86%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 15 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 74
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 75 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 134
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| || |||||| | ||||| |||| |||
Sbjct: 135 cttgaagaaggttgatggaattgagagcctaatagctaagctgacgaatctcttgactaa 194
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 195 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 254
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
|||||| || ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 255 taagcatcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 314
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 315 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 374
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 375 ggggtctgcagtagatcgatcaagagaacanactactggagcagtcaaaaagaaattgaa 434
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 435 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 494
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| | |||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 495 tgttgaaagaagggtatgtactgtaactggtaatcgccctgatgaaaagactattgatga 554
Query: 633 cttgatagagac-cggaaaaagtgagcaaatattcaaagatgct 675
|| || ||||| ||| ||||||||||| ||||||||||||
Sbjct: 555 tttaatcgagacagggagcgagtgagcaaattttcaaagatgct 598
>gb|BG418473.2|BG418473 HVSMEk0022N01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022N01f, mRNA sequence
Length = 821
Score = 521 bits (263), Expect = e-146
Identities = 480/551 (87%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 394 aaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaag 453
||||||||||||||||||| ||| ||| |||| || ||||| ||||||||||| || |||
Sbjct: 8 aaagttgatgaactggaaaaaga-aacttatctaacaggcagaaacctggatgcgggaag 66
Query: 454 ggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaag 513
|| ||||| || || ||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 67 gggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaag 126
Query: 514 gaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggtt 573
||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || |||
Sbjct: 127 gaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagtt 186
Query: 574 gtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatgac 633
|| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 187 gttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatgat 246
Query: 634 ttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaaga 693
|| || ||||| || | ||||||||||| |||||||||||| | || || ||||| |||
Sbjct: 247 ttaatcgagacagggaggagtgagcaaattttcaaagatgctgttcagcagcaggggaga 306
Query: 694 ggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatcta 753
|||||| || | |||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 307 ggccaggtattggacactgttgctgagatacaggagcggcatgatgctgtaagagatcta 366
Query: 754 gagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttgaggcg 813
|||||||||||||||||||| || ||||||||| |||| |||||||| || ||||||||
Sbjct: 367 gagaggaagcttctggagttacagcagatattcctggatatggcagtactggttgaggct 426
Query: 814 caaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaaccacatacag 873
|||||||||||||||||| |||| ||||| ||||| || || || ||||||||||||||
Sbjct: 427 caaggagacatgatcaaccacatagagacacatgtgtcaaatgctaccaaccacatacaa 486
Query: 874 caaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtggatg 933
||||||||| |||| ||||| ||||| ||||| ||||||| ||| ||||| |||||||||
Sbjct: 487 caaggtgtgggcgctctccataacgcaaagaagctgcagaagaactcgagaaagtggatg 546
Query: 934 tgctacgccat 944
|||||||||||
Sbjct: 547 tgctacgccat 557
>gb|BM372329.2|BM372329 EBro03_SQ004_K14_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_K14 5', mRNA sequence
Length = 568
Score = 521 bits (263), Expect = e-146
Identities = 470/540 (87%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 16 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 75
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 76 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 135
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 136 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 195
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 196 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 255
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 256 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 315
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 316 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 375
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || | ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 376 ggggtctgcagtaaatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 435
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 436 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 495
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatga 632
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 496 tgttgaaagaagggtatttactgtaactggtaatcgccctgatgaagagactattgatga 555
>gb|BF267575.2|BF267575 HV_CEa0018F03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F03f, mRNA sequence
Length = 867
Score = 513 bits (259), Expect = e-144
Identities = 431/489 (88%)
Strand = Plus / Plus
Query: 281 ctgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagc 340
||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 22 ctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaattaagcagc 81
Query: 341 ggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagacaaaagttg 400
| ||||||||||||||||||||||||||||||||||||| | |||||| || |||||||
Sbjct: 82 gaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaaccaaagttg 141
Query: 401 atgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaagggttctg 460
|||||||||||| ||||||| |||| || ||||| ||||||||||| || ||||| ||||
Sbjct: 142 atgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaaggggtctg 201
Query: 461 ccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaaggaacgga 520
| || || ||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 202 cagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaaggaacgga 261
Query: 521 tggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaa 580
|||| ||||||||| ||||||||| ||||| |||| ||||| || || ||||| ||||
Sbjct: 262 tggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagttgttgaaa 321
Query: 581 gaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgatgacttgatag 640
||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || |
Sbjct: 322 gaagggtatttactgtaactggtaatcgccctgatgaagagactattgatgatttaatcg 381
Query: 641 agaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggccaga 700
|||| || | ||||||||||| |||||||||||| | || || ||||| |||||||||
Sbjct: 382 agacagggaggagtgagcaaattttcaaagatgctgttcagcagcaggggagaggccagg 441
Query: 701 tactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctagagagga 760
|| | |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 442 tattggacactgttgctgagatacaggagcggcatgatgctgtaagagatctagagagga 501
Query: 761 agcttctgg 769
|||||||||
Sbjct: 502 agcttctgg 510
>gb|AV917182.1|AV917182 AV917182 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8f06 5', mRNA sequence
Length = 555
Score = 488 bits (246), Expect = e-136
Identities = 423/482 (87%)
Strand = Plus / Plus
Query: 484 actactggagcagtgaaaaagaaattgaaggaacggatggatgattttcagaccttgaga 543
|||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 51 actactggagcagtcaaaaagaaattgaaggaacggatggacgattttcaggtattgaga 110
Query: 544 gaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgtaactggt 603
||| ||||| |||| ||||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 111 gaatcaatccggcaggagtaccgggaagttgttgaaagaagggtatttactgtaactggt 170
Query: 604 aatcgtcctgatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaata 663
||||| |||||||||||||| |||||||| || || ||||| || | |||||||||||
Sbjct: 171 aatcgccctgatgaagagactattgatgatttaatcgagacagggaggagtgagcaaatt 230
Query: 664 ttcaaagatgctatccaacatcagggaagaggccagatactagacactgttgctgaaata 723
|||||||||||| | || || ||||| ||||||||| || | |||||||||||||| |||
Sbjct: 231 ttcaaagatgctgttcagcagcaggggagaggccaggtattggacactgttgctgagata 290
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 291 caggagcggcatgatgctgtaagagatctagagaggaagcttctggagttacagcagata 350
Query: 784 ttcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacc 843
||| |||| |||||||| || |||||||| |||||||||||||||||| |||| |||||
Sbjct: 351 ttcctggatatggcagtactggttgaggctcaaggagacatgatcaaccacatagagaca 410
Query: 844 catgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaag 903
||||| || || || |||||||||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 411 catgtttcaaatgctaccaaccacatacaacaaggtgtgggcgctctccagaacgcaaag 470
Query: 904 aaactgcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgata 963
|| ||||||| ||| ||||| |||||||||||||||||||||||| | || |||||||||
Sbjct: 471 aagctgcagaagaactcgagaaagtggatgtgctacgccatcatccttctcctggtgata 530
Query: 964 gt 965
||
Sbjct: 531 gt 532
>gb|BG343506.2|BG343506 HVSMEg0005P06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005P06f, mRNA sequence
Length = 978
Score = 486 bits (245), Expect = e-136
Identities = 456/528 (86%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 35 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 94
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 95 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 154
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| || |||||| | ||||| |||| |||
Sbjct: 155 cttgaagaaggttgatggaattgagagcctaatagctaagctgacgaatctcttgactaa 214
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 215 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 274
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 275 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 334
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 335 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 394
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 395 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 454
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 455 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 514
Query: 573 tgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaaga 620
||| ||||||||||| | ||||| ||||| |||| |||||||||||
Sbjct: 515 tgttgaaagaagggtatntactgntactgggtatcgccctgatgaaga 562
>gb|CA028228.1|CA028228 HZ61G01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61G01
5-PRIME, mRNA sequence
Length = 546
Score = 468 bits (236), Expect = e-130
Identities = 434/501 (86%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 46 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 105
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 106 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 165
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| | |||||| | ||||| |||| |||
Sbjct: 166 cttgaagaaggttgatggaattgagagcctaatagttaagctgacgaatctcttgactaa 225
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 226 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 285
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 286 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 345
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 346 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 405
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 406 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 465
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagaggt 572
|||||||||||| ||||||||| ||||||||| ||||| |||| ||||| || || ||
Sbjct: 466 ggaacggatggacgattttcaggtattgagagaatcaatccggcaggagtaccgggaagt 525
Query: 573 tgtcgaaagaagggtttttac 593
||| ||||||||||| |||||
Sbjct: 526 tgttgaaagaagggtatttac 546
>gb|BF259611.2|BF259611 HVSMEf0019M16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019M16f, mRNA sequence
Length = 527
Score = 452 bits (228), Expect = e-125
Identities = 405/465 (87%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctcaag 152
|||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 61 cgccgccatgaacaacctactcaccgattcatttgagcttcctcggcgggattcctcaag 120
Query: 153 agacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagattt 212
||| | || |||||||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 121 agatggggacgttgaaatgggaatgcatcagcctgatgcttctgataatttaaaaggctt 180
Query: 213 cttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataa 272
|||||||||||| |||| ||||||||| |||| || |||||| | ||||| |||| |||
Sbjct: 181 cttgaagaaggttgatggaattgagagcctaatagctaagctgacgaatctcttgactaa 240
Query: 273 gctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaat 332
|||||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct: 241 gctccagtctgcaaacgaggaatcaaaagcagttacaaaagcaagtgccatgaaagcaat 300
Query: 333 taagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaagac 392
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct: 301 taagcagcgaatggagaaagatattgatgaagtggggaaaattgctcgtatggcaaaaac 360
Query: 393 aaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtggaaa 452
||||||||||||||||||| ||||||| |||| || ||||| ||||||||||| || ||
Sbjct: 361 caaagttgatgaactggaaaaagataacttatctaacaggcagaaacctggatgcgggaa 420
Query: 453 gggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattgaa 512
||| ||||| || || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 421 ggggtctgcagtagatcgatcaagagaacagactactggagcagtcaaaaagaaattgaa 480
Query: 513 ggaacggatggatgattttcagaccttgagagaagcaatcaggca 557
|||||||||||| ||||||||| ||||||||| ||||| ||||
Sbjct: 481 ggaacggatggacgattttcaggtattgagagaatcaatccggca 525
>gb|BQ460377.1|BQ460377 HA09O01r HA Hordeum vulgare subsp. vulgare cDNA clone HA09O01
5-PRIME, mRNA sequence
Length = 482
Score = 424 bits (214), Expect = e-117
Identities = 397/458 (86%)
Strand = Plus / Plus
Query: 548 caatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgtaactggtaatc 607
||||| |||| ||||| || || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 13 caatccggcaggagtaccgggaagttgttgaaagaagggtatttactgtaactggtaatc 72
Query: 608 gtcctgatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattca 667
| |||||||||||||| |||||||| || || ||||| || | ||||||||||| ||||
Sbjct: 73 gccctgatgaagagactattgatgatttaatcgagacagggaggagtgagcaaattttca 132
Query: 668 aagatgctatccaacatcagggaagaggccagatactagacactgttgctgaaatacagg 727
|||||||| | || || ||||| ||||||||| || | |||||||||||||| |||||||
Sbjct: 133 aagatgctgttcagcagcaggggagaggccaggtattggacactgttgctgagatacagg 192
Query: 728 agcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagatattca 787
|||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 193 agcggcatgatgctgtaagagatctagagaggaagcttctggagttacagcagatattcc 252
Query: 788 tggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacccatg 847
|||| |||||||| || |||||||| |||||||||||||||||| |||| ||||| ||||
Sbjct: 253 tggatatggcagtactggttgaggctcaaggagacatgatcaaccacatagagacacatg 312
Query: 848 tctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaac 907
| || || || |||||||||||||| ||||||||| |||| ||||||||||| ||||| |
Sbjct: 313 tttcaaatgctaccaaccacatacaacaaggtgtgggcgctctccagaacgcaaagaagc 372
Query: 908 tgcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcg 967
|||||| ||| ||||| |||||||||||||||||||||||| | || ||||||||||| |
Sbjct: 373 tgcagaagaactcgagaaagtggatgtgctacgccatcatccttctcctggtgatagtgg 432
Query: 968 tggtcattgtcgtcgcagtcatccagccatggaagaag 1005
| |||| || || || || ||||||||||||||||||
Sbjct: 433 ttatcatcgtggttgcggttatccagccatggaagaag 470
>gb|AV919917.1|AV919917 AV919917 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8f06 3', mRNA sequence
Length = 463
Score = 319 bits (161), Expect = 1e-085
Identities = 305/354 (86%)
Strand = Plus / Minus
Query: 652 agtgagcaaatattcaaagatgctatccaacatcagggaagaggccagatactagacact 711
||||||||||| |||||||||||| | || || ||||| ||||||||| || | ||||||
Sbjct: 396 agtgagcaaattttcaaagatgctgttcagcagcaggggagaggccaggtattggacact 337
Query: 712 gttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaagcttctggag 771
|||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 336 gttgntgagatacaggagcggcatgatgctgtaagagatctagagaggaagcttctggag 277
Query: 772 ttgcaacagatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaac 831
|| || ||||||||| |||| |||||||| || |||||||| ||||||||||||||||||
Sbjct: 276 ttacagcagatattcctggatatggcagtactggttgaggctcaaggagacatgatcaac 217
Query: 832 aacatcgagacccatgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctc 891
|||| ||||| ||||| || || || |||||||||||||| ||||||||| |||| |||
Sbjct: 216 cacatagagacacatgtttcaaatgctaccaaccacatacaacaaggtgtgggcgctctc 157
Query: 892 cagaacgcgaagaaactgcagaggaattcgaggaagtggatgtgctacgccatcatcata 951
|||||||| ||||| ||||||| ||| ||||| ||| |||||||||||||||||| |
Sbjct: 156 cagaacgcaaagaagctgcagaagaactcgagaaagnnaatgtgctacgccatcatcctt 97
Query: 952 ctgctggtgatagtcgtggtcattgtcgtcgcagtcatccagccatggaagaag 1005
|| ||||||||||| || |||| || || || || ||||||||||||||||||
Sbjct: 96 ctcctggtgatagtggttatcatcgtggttgcggttatccagccatggaagaag 43
>gb|BI950683.1|BI950683 HVSMEl0022G13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0022G13f, mRNA sequence
Length = 875
Score = 303 bits (153), Expect = 7e-081
Identities = 319/374 (85%), Gaps = 1/374 (0%)
Strand = Plus / Plus
Query: 259 aatctattgaataagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagt 318
||||| |||| ||||||||| ||||||| |||||||| ||| ||||||||| ||||||
Sbjct: 263 aatctcttgactaagctccagtctgcaaacgaggaatcaaaagcagttacaaacgcaagt 322
Query: 319 tccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgct 378
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccatgaaagcaattcaacagcgaatggagaaagatattgatgaagtggggaaaattgct 382
Query: 379 cctcaggcaaagacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaa 438
| | |||||| || ||||| ||||||||||||| ||||||| |||| || ||||| |||
Sbjct: 383 cgtatggcaaaaaccaaagtagatgaactggaaaaagataacttatctaacaggcataaa 442
Query: 439 cctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactggagcagtg 498
|||||||| || ||||| ||||| || | ||||||| ||| || ||||||||||||||
Sbjct: 443 cctggatgcgggaaggggtctgcagtatatcgatcaacagaacagactactggagcagtc 502
Query: 499 aaaaagaaattgaaggaacggatggatgattttcagaccttgagagaagcaatcaggcaa 558
|||||||||||||||||||||||||| |||| |||| ||||||||| | ||| ||||
Sbjct: 503 aaaaagaaattgaaggaacggatggacgattctcaggtattgagagaatc-atccggcac 561
Query: 559 gagtatcgagaggttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaa 618
||||| || || ||||| ||||||||||| | |||||| ||||||||||| |||||||||
Sbjct: 562 gagtaccgggaagttgttgaaagaagggtatctactgtcactggtaatcgccctgatgaa 621
Query: 619 gagacaattgatga 632
|||| || |||||
Sbjct: 622 aagactatagatga 635
>gb|BQ759323.1|BQ759323 EBpi01_SQ004_N01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_N01 5', mRNA sequence
Length = 531
Score = 281 bits (142), Expect = 3e-074
Identities = 247/282 (87%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 13 caggagcggcatgatgctgtaagagatctagagaggaagcttctggagttacagcagata 72
Query: 784 ttcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacc 843
||| |||| |||||||| || |||||||| |||||||||||||||||| |||| |||||
Sbjct: 73 ttcctggatatggcagtactggttgaggctcaaggagacatgatcaaccacatagagaca 132
Query: 844 catgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaag 903
||||| || || || |||||||||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 133 catgtttcaaatgctaccaaccacatacaacaaggtgtgggcgctctccagaacgcaaag 192
Query: 904 aaactgcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgata 963
|| ||||||| ||| ||||| |||||||||||||||||||||||| | || |||||||||
Sbjct: 193 aagctgcagaagaactcgagaaagtggatgtgctacgccatcatccttctcctggtgata 252
Query: 964 gtcgtggtcattgtcgtcgcagtcatccagccatggaagaag 1005
|| || |||| || || || || ||||||||||||||||||
Sbjct: 253 gtggttatcatcgtggttgcggttatccagccatggaagaag 294
>gb|BU981013.1|BU981013 HA22G03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22G03
5-PRIME, mRNA sequence
Length = 636
Score = 256 bits (129), Expect = 1e-066
Identities = 291/346 (84%)
Strand = Plus / Plus
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||| || ||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 291 aagctccagtctgccaacgaggaatccaaagcagttacaaaagcaagcgccatgaaagca 350
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||| ||||| || || |||||||||||||| |||||||||| || ||| ||
Sbjct: 351 attaagcagcgaatggaaaaggacattgatgaagtgggcaaaattgctcgtctggcgaaa 410
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||| | ||| ||||||||| ||||||| |||| || ||||| ||||||||||| |
Sbjct: 411 acaaaactcgatcaactggaaaaagataacttatctaacaggcagaaacctggatgcgac 470
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattg 510
|||| ||| ||||| || |||||||| || || ||||||||||| ||||||||||| |||
Sbjct: 471 aaggattccgccgtagatcgatcaagggaacagactactggagctgtgaaaaagaacttg 530
Query: 511 aaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagag 570
||| |||||||||| ||||||||| ||||||| ||||| |||| ||||| || |
Sbjct: 531 aagaaacggatggacgattttcaggtactgagagagtcaatccggcaggagtaccggcaa 590
Query: 571 gttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatg 616
||||| ||||||||||| || || ||||||||||||||||||||||
Sbjct: 591 gttgttgaaagaagggtattcaccgtaactggtaatcgtcctgatg 636
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 93 cgccgccatgaacaacctcctcacggattcctttgagct 131
||||||||||||||| || || || ||||||||||||||
Sbjct: 119 cgccgccatgaacaatctactaaccgattcctttgagct 157
>gb|BG416184.2|BG416184 HVSMEk0010D08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0010D08f, mRNA sequence
Length = 625
Score = 242 bits (122), Expect = 2e-062
Identities = 266/314 (84%)
Strand = Plus / Plus
Query: 652 agtgagcaaatattcaaagatgctatccaacatcagggaagaggccagatactagacact 711
||||||||||| |||||||||||| | || || ||||| |||||||| || | ||||||
Sbjct: 42 agtgagcaaattttcaaagatgctgttcagcagcaggggagaggccacgtattggacact 101
Query: 712 gttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaagcttctggag 771
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 102 gttgctgagatacaggagcggcatgatgctgtaagagatctagagaggaagcttctggag 161
Query: 772 ttgcaacagatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaac 831
|| || ||||||||| |||| |||||||| || ||||| || | | ||||||||||||||
Sbjct: 162 ttacagcagatattcctggatatggcagtactggttgaagctcgatgagacatgatcaac 221
Query: 832 aacatcgagacccatgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctc 891
|||| ||||| ||||| || || || |||||||||||||| ||||||||| |||| |||
Sbjct: 222 cacatagagacacatgtttcaaatgctaccaaccacatacaacaaggtgtgggcgctctc 281
Query: 892 cagaacgcgaagaaactgcagaggaattcgaggaagtggatgtgctacgccatcatcata 951
|| ||||| |||| ||| | ||| ||| | ||||||||||||||| |||||||| |
Sbjct: 282 cacaacgcatagaagctgggcaagaactcgggaaagtggatgtgctacaccatcatcctt 341
Query: 952 ctgctggtgatagt 965
|| |||||||||||
Sbjct: 342 ctactggtgatagt 355
>gb|BQ761625.1|BQ761625 EBem10_SQ001_G12_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_G12 5', mRNA sequence
Length = 204
Score = 206 bits (104), Expect = 1e-051
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 472 tcaagagagcaaactactggagcagtgaaaaagaaattgaaggaacggatggatgatttt 531
|||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 tcaagagaacagactactggagcagtcaaaaagaaattgaaggaacggatggacgatttt 60
Query: 532 cagaccttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggttttt 591
||| ||||||||| ||||| |||| ||||| || || ||||| ||||||||||| |||
Sbjct: 61 caggtattgagagaatcaatccggcaggagtaccgggaagttgttgaaagaagggtattt 120
Query: 592 actgtaactggtaatcgtcctgatgaagagacaattgatgacttgatagagaccggaaaa 651
||||||||||||||||| |||||||||||||| |||||||| || || ||||| || |
Sbjct: 121 actgtaactggtaatcgccctgatgaagagactattgatgatttaatcgagacagggagg 180
Query: 652 agtgagcaaatattcaaagatgct 675
||||||||||| ||||||||||||
Sbjct: 181 agtgagcaaattttcaaagatgct 204
>gb|BQ657062.1|BQ657062 HA09O01u HA Hordeum vulgare subsp. vulgare cDNA clone HA09O01
3-PRIME, mRNA sequence
Length = 433
Score = 192 bits (97), Expect = 2e-047
Identities = 184/213 (86%)
Strand = Plus / Minus
Query: 793 atggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacccatgtctcg 852
|||||||| || |||||||| |||||||||||||||||| |||| ||||| ||||| ||
Sbjct: 433 atggcagtactggttgaggctcaaggagacatgatcaaccacatagagacacatgtttca 374
Query: 853 aacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcag 912
|| || |||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||||
Sbjct: 373 aatgctaccaaccacatacaacaaggtgtgggcgctctccagaacgcaaagaagctgcag 314
Query: 913 aggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtc 972
| ||| ||||| |||||||||||||||||||||||| | || ||||||||||| || ||
Sbjct: 313 aagaactcgagaaagtggatgtgctacgccatcatccttctcctggtgatagtggttatc 254
Query: 973 attgtcgtcgcagtcatccagccatggaagaag 1005
|| || || || || ||||||||||||||||||
Sbjct: 253 atcgtggttgcggttatccagccatggaagaag 221
>gb|BJ466058.1|BJ466058 BJ466058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28i14 3', mRNA sequence
Length = 361
Score = 89.7 bits (45), Expect = 2e-016
Identities = 118/143 (82%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 864 ccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgag 923
|||||| | ||||||||| |||| |||||| |||| ||||| ||||||| ||| || ||
Sbjct: 361 ccacatncnncaaggtgtgggcgctctccagnacgcaaagaagctgcagaagaactcnag 302
Query: 924 gaagtggatgtgctac-gccatcatcatactgctggtgatagtcgtggtcattgtcgtcg 982
||||||||||||| | ||||||||| | || ||||||||||| || |||| || || |
Sbjct: 301 aaagtggatgtgctncngccatcatccttctcctggtgatagtggttatcatcgtggttg 242
Query: 983 cagtcatccagccatggaagaag 1005
| || ||||||||||||||||||
Sbjct: 241 cggttatccagccatggaagaag 219
>gb|BG369473.1|BG369473 HVSMEi0024I17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024I17f, mRNA sequence
Length = 867
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 26 cctccctcctcgccgccatg 45
>gb|BI960674.1|BI960674 HVSMEn0025M02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025M02f, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 40 cctccctcctcgccgccatg 59
>gb|BQ462850.1|BQ462850 HI02D08r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D08
5-PRIME, mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 29 cctccctcctcgccgccatg 48
>gb|BQ471111.1|BQ471111 HV01B03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01B03
5-PRIME, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 27 cctccctcctcgccgccatg 46
>gb|BM373222.2|BM373222 EBma04_SQ003_J14_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_J14 5', mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 17 cctccctcctcgccgccatg 36
>gb|BM096784.2|BM096784 EBma07_SQ001_K03_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_K03 5', mRNA sequence
Length = 155
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 38 cctccctcctcgccgccatg 57
>gb|BM443408.2|BM443408 EBro02_SQ005_A08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_A08 5', mRNA sequence
Length = 353
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 17 cctccctcctcgccgccatg 36
>gb|BQ759659.1|BQ759659 EBpi05_SQ002_D17_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_D17 5', mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 38 cctccctcctcgccgccatg 57
>gb|BQ761165.1|BQ761165 EBro04_SQ004_G21_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ004_G21 5', mRNA sequence
Length = 166
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 31 cctccctcctcgccgccatg 50
>gb|BU997715.1|BU997715 HI08M19r HI Hordeum vulgare subsp. vulgare cDNA clone HI08M19
5-PRIME, mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 15 cctccctcctcgccgccatg 34
>gb|CA003291.1|CA003291 HS09P15r HS Hordeum vulgare subsp. vulgare cDNA clone HS09P15
5-PRIME, mRNA sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 25 cctccctcctcgccgccatg 44
>gb|CA026530.1|CA026530 HZ56C22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56C22
5-PRIME, mRNA sequence
Length = 137
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 10 cctccctcctcgccgccatg 29
>gb|CV054417.1|CV054417 BNEL10C6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10C6 5' similar to putative 40S
RIBOSOMAL PROTEIN S13, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 24 cctccctcctcgccgccatg 43
>gb|CV054819.1|CV054819 BNEL113f7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL113f7 5' similar to putative 40S
RIBOSOMAL PROTEIN S13, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 24 cctccctcctcgccgccatg 43
>gb|CV054907.1|CV054907 BNEL114f3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL114f3 5' similar to putative 40S
RIBOSOMAL PROTEIN S13, mRNA sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 24 cctccctcctcgccgccatg 43
>gb|CV055721.1|CV055721 BNEL122g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL122g12 5' similar to putative 40S
RIBOSOMAL PROTEIN S13, mRNA sequence
Length = 785
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 19 cctccctcctcgccgccatg 38
>gb|CV056802.1|CV056802 BNEL20g3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20g3 5' similar to putative 40S
RIBOSOMAL PROTEIN S13, mRNA sequence
Length = 513
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 24 cctccctcctcgccgccatg 43
>gb|CV064283.1|CV064283 BNEL9B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL9B4 5' similar to putative 40S RIBOSOMAL
PROTEIN S13, mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83 cctccctcctcgccgccatg 102
||||||||||||||||||||
Sbjct: 24 cctccctcctcgccgccatg 43
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 123,550
Number of Sequences: 312970
Number of extensions: 123550
Number of successful extensions: 32930
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32835
Number of HSP's gapped (non-prelim): 80
length of query: 1189
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1170
effective length of database: 169,188,109
effective search space: 197950087530
effective search space used: 197950087530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)