BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012720.2.1
(1130 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB063179.1| Hordeum vulgare BBD1 mRNA for betaine aldeh... 545 e-153
gb|BU988051.1|BU988051 HF16I12r HF Hordeum vulgare subsp. v... 426 e-118
gb|BU985741.1|BU985741 HF08H18r HF Hordeum vulgare subsp. v... 412 e-113
gb|AV834368.1|AV834368 AV834368 K. Sato unpublished cDNA li... 230 8e-059
gb|AJ436269.1|AJ436269 AJ436269 S00002 Hordeum vulgare subs... 204 5e-051
gb|CA000599.1|CA000599 HS07M01u HS Hordeum vulgare subsp. v... 157 1e-036
gb|BM817302.1|BM817302 HC105A10_T3.ab1 HC Hordeum vulgare s... 135 4e-030
gb|BQ763641.1|BQ763641 EBro03_SQ005_C06_R root, 3 week, wat... 125 3e-027
gb|AV833577.1|AV833577 AV833577 K. Sato unpublished cDNA li... 115 3e-024
gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke devel... 80 2e-013
gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA li... 80 2e-013
gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa... 80 2e-013
gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DA... 80 2e-013
gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, ... 80 2e-013
gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA li... 80 2e-013
gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. v... 80 2e-013
gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. v... 80 2e-013
gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. v... 80 2e-013
gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, n... 80 2e-013
gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA,... 80 2e-013
gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no... 80 2e-013
gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, dro... 80 2e-013
gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, dro... 80 2e-013
gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. v... 80 2e-013
gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. v... 80 2e-013
gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. v... 80 2e-013
gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. v... 80 2e-013
gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. v... 80 2e-013
gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. v... 80 2e-013
gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm libra... 80 2e-013
dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldeh... 80 2e-013
gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA li... 74 1e-011
gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. v... 72 4e-011
gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm librar... 72 4e-011
gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm librar... 64 1e-008
gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots... 56 3e-006
gb|BE196510.2|BE196510 HVSMEh0092H23f Hordeum vulgare 5-45 ... 56 3e-006
gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike... 56 3e-006
gb|BJ463472.1|BJ463472 BJ463472 K. Sato unpublished cDNA li... 56 3e-006
gb|BJ469077.1|BJ469077 BJ469077 K. Sato unpublished cDNA li... 56 3e-006
gb|BJ470754.1|BJ470754 BJ470754 K. Sato unpublished cDNA li... 56 3e-006
gb|BM376158.2|BM376158 EBma01_SQ002_I10_R maternal, 4 DPA, ... 56 3e-006
gb|BQ766358.1|BQ766358 EBro08_SQ005_C20_R root, 3 week, dro... 56 3e-006
gb|BU984384.1|BU984384 HF03M12r HF Hordeum vulgare subsp. v... 56 3e-006
gb|BU984894.1|BU984894 HF05G21r HF Hordeum vulgare subsp. v... 56 3e-006
gb|BU989755.1|BU989755 HF22J20r HF Hordeum vulgare subsp. v... 56 3e-006
gb|BU990182.1|BU990182 HF24F04r HF Hordeum vulgare subsp. v... 56 3e-006
gb|BU990251.1|BU990251 HF24I09r HF Hordeum vulgare subsp. v... 56 3e-006
gb|BU995094.1|BU995094 HM09D03r HM Hordeum vulgare subsp. v... 56 3e-006
gb|CK125684.1|CK125684 BES1824110a19 BES1824 Hordeum vulgar... 56 3e-006
gb|BE060881.2|BE060881 HVSMEg0013L09f Hordeum vulgare pre-a... 50 2e-004
gb|BM100769.1|BM100769 EBpi01_SQ001_M01_R pistil, 1 DPA, no... 50 2e-004
gb|BJ472041.1|BJ472041 BJ472041 K. Sato unpublished cDNA li... 50 2e-004
gb|AV921441.1|AV921441 AV921441 K. Sato unpublished cDNA li... 44 0.010
gb|BJ467472.1|BJ467472 BJ467472 K. Sato unpublished cDNA li... 44 0.010
gb|BM368414.2|BM368414 EBem08_SQ002_C20_R embryo, 40 DPA, n... 44 0.010
gb|BU987155.1|BU987155 HF13P07r HF Hordeum vulgare subsp. v... 42 0.039
gb|CA024294.1|CA024294 HZ48O11r HZ Hordeum vulgare subsp. v... 42 0.039
gb|BG299265.1|BG299265 HVSMEa0019A19f Hordeum vulgare seedl... 40 0.16
gb|BJ470674.1|BJ470674 BJ470674 K. Sato unpublished cDNA li... 40 0.16
gb|BM370947.2|BM370947 EBro04_SQ003_A05_R root, 3 week, sal... 40 0.16
>dbj|AB063179.1| Hordeum vulgare BBD1 mRNA for betaine aldehyde dehydrogenase,
complete cds
Length = 1909
Score = 545 bits (275), Expect = e-153
Identities = 623/739 (84%)
Strand = Plus / Minus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 1536 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 1477
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 1476 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 1417
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 1416 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 1357
Query: 553 agatcacggcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactat 612
||||||| ||||||| || |||||||| |||||||||||||| || || ||||| || |
Sbjct: 1356 agatcacaccaccagccaagccatagtgcgtatcatttgcaagctcgacggcttcgctct 1297
Query: 613 ctgtcctaaactccttaacacagatgactggtccaaagacttcctcttgccaaatttgca 672
||||| | || | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1296 ctgtcttgaatactttcacacagatgactggtccaaagacttcctctctccaaatttgca 1237
Query: 673 ttgacgtactaacatctgttataattgtaggttcaagaaagaaccctcttctgagatgct 732
|||| || ||||| |||||||||| || ||||||| ||||||||| ||| ||||| ||
Sbjct: 1236 ttgatgtgctaacgcctgttataatagtgggttcaatgaagaacccttttccgagattct 1177
Query: 733 gtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaact 792
||||||| |||| |||| ||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 1176 ttggtcggtcacccccatgcaaaattgtagcaccttcacttcttgctgttgagatgaact 1117
Query: 793 tctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctcca 852
|||| ||||| || ||||| |||| |||||| ||||||||||| ||||| ||||| || |
Sbjct: 1116 tcttgatcttttcatactgccctttactgatgactgaacccagcctgcaaccttcttcta 1057
Query: 853 gtggatctgagacttttatattctttgcccatgcaaccaatctatccaagaatttctttg 912
|||| ||||||| ||||||||||||||||||| | || | ||||||||| ||| || ||
Sbjct: 1056 gtgggtctgagatttttatattctttgcccattcgacaagtctatccaaaaatcgctctg 997
Query: 913 caattttctcatgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcga 972
||||||||||||| || |||| |||||||| |||||||| ||||||||| |||| |
Sbjct: 996 caattttctcatggagaagtaggcgagaagttgcactgcaaacttgaccaccattgaaaa 937
Query: 973 agatcccaaacatggtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaa 1032
| |||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct: 936 aacaaccaaacatggcccattcaacagctttgtcaatgtcagcaacatcatcaaagataa 877
Query: 1033 taagaggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaaa 1092
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 876 caagaggacttttgccaccaagctctaatgaaacaggcttaaccatttgagcagcagcgg 817
Query: 1093 tcattatcctcttaccagt 1111
|||||||| ||||||||||
Sbjct: 816 tcattatcgtcttaccagt 798
>gb|BU988051.1|BU988051 HF16I12r HF Hordeum vulgare subsp. vulgare cDNA clone HF16I12
5-PRIME, mRNA sequence
Length = 657
Score = 426 bits (215), Expect = e-118
Identities = 458/539 (84%)
Strand = Plus / Minus
Query: 573 ccatagtgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaaca 632
|||||||| |||||||||||||| || || ||||| || |||||| | || | || |||
Sbjct: 651 ccatagtgcgtatcatttgcaagctcgacggcttcgctctctgtcttgaatactttcaca 592
Query: 633 cagatgactggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgtt 692
||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||
Sbjct: 591 cagatgactggtccaaagacttcctctctccaaatttgcattgatgtgctaacgcctgtt 532
Query: 693 ataattgtaggttcaagaaagaaccctcttctgagatgctgtggtcggccacctccatac 752
||||| || ||||||| ||||||||| ||| ||||| || ||||||| |||| |||| |
Sbjct: 531 ataatagtgggttcaatgaagaacccttttccgagattctttggtcggtcacccccatgc 472
Query: 753 aaaattgtggcaccttcacttcttgcagtcgagatgaacttctttatcttctcgtactgt 812
|||||||| ||||||||||||||||| || |||||||||||||| ||||| || |||||
Sbjct: 471 aaaattgtagcaccttcacttcttgctgttgagatgaacttcttgatcttttcatactgc 412
Query: 813 ccttcactgataactgaacccagtctgcagccttcctccagtggatctgagacttttata 872
|||| |||||| ||||||||||| ||||| ||||| || ||||| ||||||| |||||||
Sbjct: 411 cctttactgatgactgaacccagcctgcaaccttcttctagtgggtctgagatttttata 352
Query: 873 ttctttgcccatgcaaccaatctatccaagaatttctttgcaattttctcatgcagcagt 932
|||||||||||| | || | ||||||||| ||| || ||||||||||||||| || |||
Sbjct: 351 ttctttgcccattcgacaagtctatccaaaaatcgctctgcaattttctcatggagaagt 292
Query: 933 aaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtccat 992
| |||||||| |||||||| ||||||||| |||| || |||||||||| ||||
Sbjct: 291 aggcgagaagttgcactgcaaacttgaccaccattgaaaaaacaaccaaacatggcccat 232
Query: 993 tcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccacca 1052
||||||||||||||||||||| ||| |||||||||| || |||||||||||| ||||||
Sbjct: 231 tcaacagctttgtcaatgtcagcaacatcatcaaagataacaagaggacttttgccacca 172
Query: 1053 agctctaatgagacaggcttaaccatttgggcagctgaaatcattatcctcttaccagt 1111
||||||||||| ||||||||||||||||| ||||| | |||||||| ||||||||||
Sbjct: 171 agctctaatgaaacaggcttaaccatttgagcagcagcggtcattatcgtcttaccagt 113
>gb|BU985741.1|BU985741 HF08H18r HF Hordeum vulgare subsp. vulgare cDNA clone HF08H18
5-PRIME, mRNA sequence
Length = 640
Score = 412 bits (208), Expect = e-113
Identities = 448/528 (84%)
Strand = Plus / Minus
Query: 584 atcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatgactgg 643
|||||||||||| || || ||||| || |||||| | || | || ||||||||||||||
Sbjct: 640 atcatttgcaagctcgacggcttcgctctctgtcttgaatactttcacacagatgactgg 581
Query: 644 tccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataattgtagg 703
|||||||||||||||| ||||||||||||||| || ||||| |||||||||| || ||
Sbjct: 580 tccaaagacttcctctctccaaatttgcattgatgtgctaacgcctgttataatagtggg 521
Query: 704 ttcaagaaagaaccctcttctgagatgctgtggtcggccacctccatacaaaattgtggc 763
||||| ||||||||| ||| ||||| || ||||||| |||| |||| ||||||||| ||
Sbjct: 520 ttcaatgaagaacccttttccgagattctttggtcggtcacccccatgcaaaattgtagc 461
Query: 764 accttcacttcttgcagtcgagatgaacttctttatcttctcgtactgtccttcactgat 823
||||||||||||||| || |||||||||||||| ||||| || ||||| |||| ||||||
Sbjct: 460 accttcacttcttgctgttgagatgaacttcttgatcttttcatactgccctttactgat 401
Query: 824 aactgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgccca 883
||||||||||| ||||| ||||| || ||||| ||||||| ||||||||||||||||||
Sbjct: 400 gactgaacccagcctgcaaccttcttctagtgggtctgagatttttatattctttgccca 341
Query: 884 tgcaaccaatctatccaagaatttctttgcaattttctcatgcagcagtaaacgagaagt 943
| | || | ||||||||| ||| || ||||||||||||||| || |||| ||||||||
Sbjct: 340 ttcgacaagtctatccaaaaatcgctctgcaattttctcatggagaagtaggcgagaagt 281
Query: 944 agcactgcagacttgaccagcattcgcgaagatcccaaacatggtccattcaacagcttt 1003
|||||||| ||||||||| |||| || |||||||||| |||||||||||||||
Sbjct: 280 tgcactgcaaacttgaccaccattgaaaaaacaaccaaacatggcccattcaacagcttt 221
Query: 1004 gtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctctaatga 1063
|||||||||| ||| |||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 220 gtcaatgtcagcaacatcatcaaagataacaagaggacttttgccaccaagctctaatga 161
Query: 1064 gacaggcttaaccatttgggcagctgaaatcattatcctcttaccagt 1111
||||||||||||||||| ||||| | |||||||| ||||||||||
Sbjct: 160 aacaggcttaaccatttgagcagcagcggtcattatcgtcttaccagt 113
>gb|AV834368.1|AV834368 AV834368 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15l21, mRNA sequence
Length = 635
Score = 230 bits (116), Expect = 8e-059
Identities = 281/336 (83%)
Strand = Plus / Plus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 294 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 353
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 354 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 413
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 414 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 473
Query: 553 agatcacggcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactat 612
||||||| ||||||| || |||||||| |||||||||||||| || || ||||| || |
Sbjct: 474 agatcacaccaccagccaagccatagtgcgtatcatttgcaagctcgacggcttcgctct 533
Query: 613 ctgtcctaaactccttaacacagatgactggtccaaagacttcctcttgccaaatttgca 672
||||| | || | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 534 ctgtcttgaatactttcacacagatgactggtccaaagacttcctctctccaaatttgca 593
Query: 673 ttgacgtactaacatctgttataattgtaggttcaa 708
|||| || ||||| |||||||||| || |||||||
Sbjct: 594 ttgatgtgctaacgcctgttataatagtgggttcaa 629
>gb|AJ436269.1|AJ436269 AJ436269 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200024F01F1, mRNA sequence
Length = 600
Score = 204 bits (103), Expect = 5e-051
Identities = 250/299 (83%)
Strand = Plus / Minus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 303 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 244
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 243 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 184
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 183 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 124
Query: 553 agatcacggcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactat 612
||||||| ||||||| || |||||||| |||||||||||||| || || ||||| || |
Sbjct: 123 agatcacaccaccagccaagccatagtgcgtatcatttgcaagctcgacggcttcgctct 64
Query: 613 ctgtcctaaactccttaacacagatgactggtccaaagacttcctcttgccaaatttgc 671
||||| | || | || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 63 ctgtcttgaatactttcacacagatgactggtccaaagacttcctctctccaaatttgc 5
>gb|CA000599.1|CA000599 HS07M01u HS Hordeum vulgare subsp. vulgare cDNA clone HS07M01
3-PRIME, mRNA sequence
Length = 512
Score = 157 bits (79), Expect = 1e-036
Identities = 187/223 (83%)
Strand = Plus / Plus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 286 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 345
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 346 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 405
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 406 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 465
Query: 553 agatcacggcaccagctaaaccatagtgagtatcatttgcaag 595
||||||| ||||||| || |||||||| ||||||||||||||
Sbjct: 466 agatcacaccaccagccaagccatagtgcgtatcatttgcaag 508
>gb|BM817302.1|BM817302 HC105A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105A10_T3.ab1 similar to Glyceraldehyde-3-phosphate
dehydrogenase (NADP ),Benzaldehyde dehydrogenase (NAD ),
mRNA sequence
Length = 946
Score = 135 bits (68), Expect = 4e-030
Identities = 173/208 (83%)
Strand = Plus / Minus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 236 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 177
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 176 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 117
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 116 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 57
Query: 553 agatcacggcaccagctaaaccatagtg 580
||||||| ||||||| || ||||||||
Sbjct: 56 agatcacaccaccagccaagccatagtg 29
>gb|BQ763641.1|BQ763641 EBro03_SQ005_C06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C06 5', mRNA sequence
Length = 507
Score = 125 bits (63), Expect = 3e-027
Identities = 156/187 (83%)
Strand = Plus / Minus
Query: 373 tggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaa 432
|||||||||| || || |||||||||| || || ||||||||||| |||||||| || |
Sbjct: 212 tggtgacttgtttcacgctcaggtagttctcgaggccccattctcctagctcccggccga 153
Query: 433 aaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaacaattta 492
|||| |||||||||||||||||||| ||||||||||| | ||||| || || ||||
Sbjct: 152 aaccactccgcttgttccctccccacggagcttgaaccagagtcggttgcgagcagttta 93
Query: 493 tccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattgg 552
|||||| ||| |||||||||| | |||||| || ||||||||||||||| |||||| |
Sbjct: 92 tccaaacaattccagagtgaataacctttgcgatacgctcacacctctctagatcatcag 33
Query: 553 agatcac 559
|||||||
Sbjct: 32 agatcac 26
>gb|AV833577.1|AV833577 AV833577 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags15l21, mRNA sequence
Length = 599
Score = 115 bits (58), Expect = 3e-024
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 1002 ttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctctaat 1061
|||||||||||| ||| |||||||||| || |||||||||||| |||||||||||||||
Sbjct: 599 ttgtcaatgtcagcaacatcatcaaagataacaagaggacttttgccaccaagctctaat 540
Query: 1062 gagacaggcttaaccatttgggcagctgaaatcattatcctcttaccagt 1111
|| ||||||||||||||||| ||||| | |||||||| ||||||||||
Sbjct: 539 gaaacaggcttaaccatttgagcagcagcggtcattatcgtcttaccagt 490
>gb|AL509634.1|AL509634 AL509634 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02G16u 3',
mRNA sequence
Length = 648
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 211 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 270
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 271 caccccacggagcttg 286
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 376 atcacggcaccagccagaccataatgagtatc 407
>gb|AV832590.1|AV832590 AV832590 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare leaves vegetative stage Hordeum vulgare subsp.
vulgare cDNA clone baak1n06, mRNA sequence
Length = 674
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 352 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 411
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 412 cgccccacggagcttg 427
Score = 42.1 bits (21), Expect = 0.039
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 624 tccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattga 676
||||| ||||| | |||||| |||||||||||||| ||||||| | ||||||
Sbjct: 585 tccttcacacacaggactggaccaaagacttcctcccgccaaatctccattga 637
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 516 atcacggcaccagccagaccataatgagtatc 547
>gb|BG415892.1|BG415892 HVSMEk0008M13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008M13f, mRNA sequence
Length = 699
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 148 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 89
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 88 cgccccacggagcttg 73
>gb|BG368878.2|BG368878 HVSMEi0021B19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021B19f, mRNA sequence
Length = 749
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 497 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 438
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 437 cgccccacggagcttg 422
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 789 aacttctttatcttctcgtactgtccttcact 820
|||||||| |||||||| ||||||||||||||
Sbjct: 99 aacttcttgatcttctcatactgtccttcact 68
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 333 atcacggcaccagccagaccataatgagtatc 302
>gb|BM376177.1|BM376177 EBma01_SQ002_J06_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J06 5', mRNA sequence
Length = 413
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 197 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 138
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 137 cgccccacggagcttg 122
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 33 atcacggcaccagccagaccataatgagtatc 2
>gb|BJ463439.1|BJ463439 BJ463439 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27l03 5', mRNA sequence
Length = 667
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 278 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 219
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 218 caccccacggagcttg 203
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 114 atcacggcaccagccagaccataatgagtatc 83
>gb|BJ466421.1|BJ466421 BJ466421 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a22 3', mRNA sequence
Length = 614
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 162 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 221
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 222 caccccacggagcttg 237
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 788 gaacttctttatcttctcgtactgtccttcact 820
||||||||| |||||||| ||||||||||||||
Sbjct: 559 gaacttcttgatcttctcatactgtccttcact 591
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 326 atcacggcaccagccagaccataatgagtatc 357
>gb|BJ468318.1|BJ468318 BJ468318 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38d10 3', mRNA sequence
Length = 713
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 195 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 254
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 255 caccccacggagcttg 270
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 788 gaacttctttatcttctcgtactgtccttcact 820
||||||||| |||||||| ||||||||||||||
Sbjct: 592 gaacttcttgatcttctcatactgtccttcact 624
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 359 atcacggcaccagccagaccataatgagtatc 390
>gb|BJ471121.1|BJ471121 BJ471121 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 5', mRNA sequence
Length = 576
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 524 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 465
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 464 caccccacggagcttg 449
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 788 gaacttctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttc 847
||||||||| |||||||| |||||||||||||| | ||||| || || ||||| || ||
Sbjct: 127 gaacttcttgatcttctcatactgtccttcactaacaactggcccaagcctgcaaccctc 68
Query: 848 ctccagtggatctgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || || ||||| || | |||||||||||
Sbjct: 67 ctcgagcgggtctgacaccttgatatttttggaccatgcaacca 24
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 360 atcacggcaccagccagaccataatgagtatc 329
>gb|BJ473517.1|BJ473517 BJ473517 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12p17 3', mRNA sequence
Length = 705
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 297 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 356
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 357 caccccacggagcttg 372
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 461 atcacggcaccagccagaccataatgagtatc 492
>gb|BJ475564.1|BJ475564 BJ475564 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26h04 3', mRNA sequence
Length = 606
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 282 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 341
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 342 caccccacggagcttg 357
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 446 atcacggcaccagccagaccataatgagtatc 477
>gb|BJ475971.1|BJ475971 BJ475971 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30n10 3', mRNA sequence
Length = 708
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 256 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 315
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 316 caccccacggagcttg 331
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 788 gaacttctttatcttctcgtactgtccttcact 820
||||||||| |||||||| ||||||||||||||
Sbjct: 653 gaacttcttgatcttctcatactgtccttcact 685
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 420 atcacggcaccagccagaccataatgagtatc 451
>gb|BQ663294.1|BQ663294 HU02A14u HU Hordeum vulgare subsp. vulgare cDNA clone HU02A14
3-PRIME, mRNA sequence
Length = 400
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 274 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 333
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 334 caccccacggagcttg 349
>gb|BQ663837.1|BQ663837 HU04E06u HU Hordeum vulgare subsp. vulgare cDNA clone HU04E06
3-PRIME, mRNA sequence
Length = 571
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 265 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 324
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 325 caccccacggagcttg 340
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 429 atcacggcaccagccagaccataatgagtatc 460
>gb|BQ664128.1|BQ664128 HV01P19w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P19
3-PRIME, mRNA sequence
Length = 535
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 213 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 272
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 273 caccccacggagcttg 288
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 377 atcacggcaccagccagaccataatgagtatc 408
>gb|BM377612.2|BM377612 EBem04_SQ003_K14_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_K14 5', mRNA sequence
Length = 510
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 300 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 241
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 240 cgccccacggagcttg 225
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 136 atcacggcaccagccagaccataatgagtatc 105
>gb|BM371740.2|BM371740 EBma08_SQ003_M14_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_M14 5', mRNA sequence
Length = 482
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 440 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 381
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 380 cgccccacggagcttg 365
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 789 aacttctttatcttctcgtactgtccttcact 820
|||||||| |||||||| ||||||||||||||
Sbjct: 42 aacttcttgatcttctcatactgtccttcact 11
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 276 atcacggcaccagccagaccataatgagtatc 245
>gb|BQ762078.1|BQ762078 EBpi01_SQ005_B21_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_B21 5', mRNA sequence
Length = 127
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 118 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 59
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 58 cgccccacggagcttg 43
>gb|BQ766572.1|BQ766572 EBro08_SQ006_A18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_A18 5', mRNA sequence
Length = 486
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 260 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 201
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 200 cgccccacggagcttg 185
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 96 atcacggcaccagccagaccataatgagtatc 65
>gb|BQ767898.1|BQ767898 EBro08_SQ010_K04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_K04 5', mRNA sequence
Length = 458
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 352 tcaggtagttatcaatgcccctttctccgagctctcgcccaaagccgctgcgcttgttcc 293
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 292 cgccccacggagcttg 277
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 188 atcacggcaccagccagaccataatgagtatc 157
>gb|BU975354.1|BU975354 HB30O13r BC Hordeum vulgare subsp. vulgare cDNA clone HB30O13
5-PRIME, mRNA sequence
Length = 474
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 444 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 385
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 384 caccccacggagcttg 369
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 788 gaacttctttatcttctcgtactgtccttcact 820
||||||||| |||||||| ||||||||||||||
Sbjct: 47 gaacttcttgatcttctcatactgtccttcact 15
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 280 atcacggcaccagccagaccataatgagtatc 249
>gb|BU986428.1|BU986428 HF11M21r HF Hordeum vulgare subsp. vulgare cDNA clone HF11M21
5-PRIME, mRNA sequence
Length = 581
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 378 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 319
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 318 caccccacggagcttg 303
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 214 atcacggcaccagccagaccataatgagtatc 183
>gb|BU989601.1|BU989601 HF22C24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22C24
5-PRIME, mRNA sequence
Length = 474
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 258 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 199
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 198 caccccacggagcttg 183
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 94 atcacggcaccagccagaccataatgagtatc 63
>gb|BU995181.1|BU995181 HM09H12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
5-PRIME, mRNA sequence
Length = 454
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 181 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 122
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 121 caccccacggagcttg 106
>gb|CA019787.1|CA019787 HV13C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C16
5-PRIME, mRNA sequence
Length = 491
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 312 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 253
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 252 caccccacggagcttg 237
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 148 atcacggcaccagccagaccataatgagtatc 117
>gb|CB881237.1|CB881237 HM09D03w HM Hordeum vulgare subsp. vulgare cDNA clone HM09D03
3-PRIME, mRNA sequence
Length = 574
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 286 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 345
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 346 caccccacggagcttg 361
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 450 atcacggcaccagccagaccataatgagtatc 481
>gb|CB881326.1|CB881326 HM09H12w HM Hordeum vulgare subsp. vulgare cDNA clone HM09H12
3-PRIME, mRNA sequence
Length = 463
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 285 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 344
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 345 caccccacggagcttg 360
>gb|CV060030.1|CV060030 BNEL53f12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL53f12 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 587
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 232 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 291
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 292 cgccccacggagcttg 307
Score = 42.1 bits (21), Expect = 0.039
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 624 tccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattga 676
||||| ||||| | |||||| |||||||||||||| ||||||| | ||||||
Sbjct: 465 tccttcacacacaggactggaccaaagacttcctcccgccaaatctccattga 517
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 396 atcacggcaccagccagaccataatgagtatc 427
>dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldehyde dehydrogenase,
complete cds
Length = 1889
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 1490 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 1431
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 1430 caccccacggagcttg 1415
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 788 gaacttctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttc 847
||||||||| |||||||| |||||||||||||| | ||||| || || ||||| || ||
Sbjct: 1093 gaacttcttgatcttctcatactgtccttcactaacaactggcccaagcctgcaaccctc 1034
Query: 848 ctccagtggatctgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || || ||||| || | |||||||||||
Sbjct: 1033 ctcgagcgggtctgacaccttgatatttttggaccatgcaacca 990
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 894 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 838
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 837 ccaccaagctccaatgtaacaggctt 812
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 1326 atcacggcaccagccagaccataatgagtatc 1295
>gb|BJ475484.1|BJ475484 BJ475484 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25o04 3', mRNA sequence
Length = 575
Score = 73.8 bits (37), Expect = 1e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||| ||||||||||| |||| |||||||||||| || ||||| ||||| ||||||||||
Sbjct: 252 tcangtagttatcaatgcccccttctccgagctctcgcccaaagccgctgcgcttgttcc 311
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 312 caccccacggagcttg 327
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 416 atcacggcaccagccagaccataatgagtatc 447
>gb|CA005501.1|CA005501 HU10B24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10B24
3-PRIME, mRNA sequence
Length = 347
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||||| |||||||||
Sbjct: 265 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgctgtgcttgttcc 324
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 325 caccccacggagcttg 340
>gb|CV064014.1|CV064014 BNEL96d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL96d4 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 593
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| |||||||||||| || ||||| ||| | ||||||||||
Sbjct: 298 tcaggtagttatcaatgcccccttctccgagctctcgcccaaagccgttgcgcttgttcc 357
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 358 cgccccacggagcttg 373
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| |||||||| ||||||||
Sbjct: 462 atcacggcaccagccaaaccataatgagtatc 493
>gb|CV063841.1|CV063841 BNEL93g5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93g5 5' similar to betaine
aldehyde dehydrogenase, mRNA sequence
Length = 699
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 391 tcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttcc 450
||||||||||||||| |||| || ||||||||| || ||||| ||| | ||||||||||
Sbjct: 253 tcaggtagttatcaatgcccccttttccgagctctcgcccaaagccgttgcgcttgttcc 312
Query: 451 ctccccaaggagcttg 466
| ||||| ||||||||
Sbjct: 313 cgccccacggagcttg 328
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 555 atcacggcaccagctaaaccatagtgagtatc 586
|||||||||||||| | |||||| ||||||||
Sbjct: 417 atcacggcaccagccagaccataatgagtatc 448
>gb|AL503611.1|AL503611 AL503611 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02M15T 5', mRNA sequence
Length = 700
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 788 gaacttctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttc 847
||||||||| |||||||| |||||||||||||| | ||||| || || ||||| || ||
Sbjct: 449 gaacttcttgatcttctcatactgtccttcactaacaactggcccaagcctgcaaccctc 390
Query: 848 ctccagtggatctgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || || ||||| || | |||||||||||
Sbjct: 389 ctcgagcgggtctgacaccttgatatttttggaccatgcaacca 346
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 250 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 194
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 193 ccaccaagctccaatgtaacaggctt 168
>gb|BE196510.2|BE196510 HVSMEh0092H23f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0092H23f, mRNA sequence
Length = 903
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 244 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 188
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 187 ccaccaagctccaatgtaacaggctt 162
>gb|BI947690.1|BI947690 HVSMEl0006H06f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0006H06f, mRNA sequence
Length = 832
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 114 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 58
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 57 ccaccaagctccaatgtaacaggctt 32
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 789 aacttctttatcttctcgtactgtccttcact 820
|||||||| |||||||| ||||||||||||||
Sbjct: 312 aacttcttgatcttctcatactgtccttcact 281
>gb|BJ463472.1|BJ463472 BJ463472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a22 5', mRNA sequence
Length = 644
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 788 gaacttctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttc 847
||||||||| |||||||| |||||||||||||| | ||||| || || ||||| || ||
Sbjct: 525 gaacttcttgatcttctcatactgtccttcactaacaactggcccaagcctgcaaccctc 466
Query: 848 ctccagtggatctgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || || ||||| || | |||||||||||
Sbjct: 465 ctcgagcgggtctgacaccttgatatttttggaccatgcaacca 422
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 326 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 270
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 269 ccaccaagctccaatgtaacaggctt 244
>gb|BJ469077.1|BJ469077 BJ469077 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12p17 5', mRNA sequence
Length = 637
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 616 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 560
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 559 ccaccaagctccaatgtaacaggctt 534
>gb|BJ470754.1|BJ470754 BJ470754 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26h04 5', mRNA sequence
Length = 638
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 619 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 563
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 562 ccaccaagctccaatgtaacaggctt 537
>gb|BM376158.2|BM376158 EBma01_SQ002_I10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_I10 5', mRNA sequence
Length = 440
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 281 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 225
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 224 ccaccaagctccaatgtaacaggctt 199
>gb|BQ766358.1|BQ766358 EBro08_SQ005_C20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C20 5', mRNA sequence
Length = 642
Score = 56.0 bits (28), Expect = 3e-006
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 987 gtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttc 1046
||||| |||||||||||||||||||| || |||||||| || | || |||||||||
Sbjct: 397 gtccactcaacagctttgtcaatgtcgaca---tcatcaaatactacaataggacttttg 341
Query: 1047 ccaccaagctctaatgagacaggctt 1072
||||||||||| |||| ||||||||
Sbjct: 340 ccaccaagctccaatgtaacaggctt 315
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 789 aacttctttatcttctcgtactgtccttcactgataactgaacccagtctgcagccttcc 848
|||||||| |||||||| |||||||||||||| | ||||| || || ||||| || |||
Sbjct: 595 aacttcttgatcttctcatactgtccttcactaacaactggcccaagcctgcaaccctcc 536
Query: 849 tccagtggatctgagacttttatattctttgcccatgcaacca 891
|| || || ||||| || || ||||| || | |||||||||||
Sbjct: 535 tcgagcgggtctgacaccttgatatttttggaccatgcaacca 493
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,263
Number of Sequences: 312970
Number of extensions: 89263
Number of successful extensions: 24632
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24409
Number of HSP's gapped (non-prelim): 204
length of query: 1130
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1111
effective length of database: 169,188,109
effective search space: 187967989099
effective search space used: 187967989099
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)