BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB878751.1|CB878751 HP09L01T HP Hordeum vulgare subsp. v... 654 0.0
gb|BU986719.1|BU986719 HF12L11r HF Hordeum vulgare subsp. v... 577 e-163
gb|CK122559.1|CK122559 BES1824103p10 BES1824 Hordeum vulgar... 500 e-140
gb|AV916883.1|AV916883 AV916883 K. Sato unpublished cDNA li... 468 e-130
gb|BI778984.2|BI778984 EBro01_SQ002_G21_R root, 3 week, hyd... 442 e-122
gb|BU998909.1|BU998909 HI12I16r HI Hordeum vulgare subsp. v... 422 e-116
gb|BI956222.1|BI956222 HVSMEn0001E03f Hordeum vulgare rachi... 309 1e-082
gb|AV922181.1|AV922181 AV922181 K. Sato unpublished cDNA li... 248 4e-064
gb|BE454747.1|BE454747 HVSMEh0095M02f Hordeum vulgare 5-45 ... 234 5e-060
gb|BE215119.2|BE215119 HV_CEb0005N21f Hordeum vulgare seedl... 141 6e-032
gb|CB860069.1|CB860069 HI12I16w HI Hordeum vulgare subsp. v... 139 2e-031
>gb|CB878751.1|CB878751 HP09L01T HP Hordeum vulgare subsp. vulgare cDNA clone HP09L01
5-PRIME, mRNA sequence
Length = 696
Score = 654 bits (330), Expect = 0.0
Identities = 573/654 (87%)
Strand = Plus / Plus
Query: 176 gtcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtact 235
||||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 43 gtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggttcatctttgtact 102
Query: 236 tcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggcc 295
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaagaaccagtgggct 162
Query: 296 cgtgatgatcctgcatttgttgttattctgattcttttcctcgtgtttgcaacatcagct 355
|| ||||||||||||||| |||| ||||| ||||||||||| |||||||| |||||||||
Sbjct: 163 cgggatgatcctgcatttattgtcattctaattcttttccttgtgtttgcgacatcagct 222
Query: 356 tactgtgcagcatatggagagagtgcctcacatgctgctctaacaatcacttcggttgtg 415
||||||||||| | |||||||||||| | ||||||||| ||||||||| |||||||||
Sbjct: 223 tactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatcatctcggttgtg 282
Query: 416 tttctccatttcttgtttgctgggatagttttggccacactttgctggttccttacaaat 475
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct: 283 tttgtccatttcttgtttgctgggctagttttggccacactttgctggtttcttaccaat 342
Query: 476 tcttacttgagagaggaacctaacagccatgttgttgagcaacgcgtggagtggctctat 535
||||| |||| ||||||||||| |||||||| || || || || || |||||||| |||
Sbjct: 343 tcttatctgagggaggaacctaatagccatgtggtcgaacagcgtgtcgagtggctgtat 402
Query: 536 gcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatgtggtgcag 595
|||||||| ||||| || ||||||||||| ||||| || ||||||||||||||| | ||
Sbjct: 403 gcatttgatgttcactgcaactcgttcttccctgcattcgtcatcctatatgtgcttcaa 462
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|| ||| |||||||||| ||| |||| ||||| ||||| || || | ||||| || ||
Sbjct: 463 tactttttgtcgcctctgttgatcgcacatggattcttgcctgccctattatcaaacctc 522
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatgttctt 715
|| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 523 ctgttcatggtggcaatttcttattatcactatctgaacttcctaggatatgatgttctt 582
Query: 716 ccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtct 775
|||||| | || |||||||||| ||| |||| |||||||| || |||||||| || ||
Sbjct: 583 ccatttttggaccgaacaacatttttcttgtacccgattggacttgtcatcattctatcg 642
Query: 776 ccacttatgatactaatagggtttaatccgacaagatactttctaagcttgtac 829
||||| |||||||| ||||||||||||| ||| |||||||||| |||||||||
Sbjct: 643 ccactcatgatactcgtagggtttaatccaacacgatactttctgagcttgtac 696
>gb|BU986719.1|BU986719 HF12L11r HF Hordeum vulgare subsp. vulgare cDNA clone HF12L11
5-PRIME, mRNA sequence
Length = 652
Score = 577 bits (291), Expect = e-163
Identities = 486/551 (88%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 102 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 161
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 162 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 221
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 222 aaccagtgggctcgggatgatcctgcatttattgtcattctaattcttttccttgtgttt 281
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 282 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatc 341
Query: 404 acttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgctgg 463
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 atctcggttgtgtttgtccatttcttgtttgctgggctagttttggccacactttgctgg 401
Query: 464 ttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcgtg 523
|| ||||| |||||||| |||| ||||||||||| |||||||| || || || || ||
Sbjct: 402 tttcttaccaattcttatctgagggaggaacctaatagccatgtggtcgaacagcgtgtc 461
Query: 524 gagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatccta 583
|||||||| ||||||||||| ||||| || ||||||||||| ||||| || |||||||||
Sbjct: 462 gagtggctgtatgcatttgatgttcactgcaactcgttcttccctgcattcgtcatccta 521
Query: 584 tatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctttg 643
|||||| | || || ||| |||||||||| ||| |||| ||||| ||||| || || |
Sbjct: 522 tatgtgcttcaatactttttgtcgcctctgttgatcgcacatggattcttgcctgcccta 581
Query: 644 ttatctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctagga 703
||||| || || || ||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 582 ttatcaaacctcctgttcatggtggcaatttcttattatcactatctgaacttcctagga 641
Query: 704 tatgatgttct 714
|||||||||||
Sbjct: 642 tatgatgttct 652
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 32 gatgctgcccacgacggcgtccaagggccggggggccgcccgctccgccc 81
>gb|CK122559.1|CK122559 BES1824103p10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P103 5-PRIME, mRNA sequence
Length = 694
Score = 500 bits (252), Expect = e-140
Identities = 415/470 (88%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 155 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 214
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 215 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 274
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 275 aaccagtgggctcgggatgatcctgcatttattgtcattctaattcttttccttgtgttt 334
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 335 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatc 394
Query: 404 acttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgctgg 463
| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 atctcggttgtgtttgnccatttcttgtttgctgggctagttttggccacactttgctgg 454
Query: 464 ttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcgtg 523
|| ||||| |||||||| |||| ||||||||||| |||||||| || || || || ||
Sbjct: 455 tttcttaccaattcttatctgagggaggaacctaatagccatgtggtcgaacagcgtgtc 514
Query: 524 gagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatccta 583
|||||||| ||||||||||| ||||| || ||||||||||| ||||| || |||||||||
Sbjct: 515 gagtggctgtatgcatttgatgttcactgcaactcgttcttccctgcattcgtcatccta 574
Query: 584 tatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctt 633
|||||| | || || ||| |||||||||| || |||| ||||| |||||
Sbjct: 575 tatgtgcttcaatactttttgtcgcctctgntgatcgcacatggattctt 624
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 85 gatgctgcccacgacggcgtccaagggccggggggccgcccgctccgccc 134
>gb|AV916883.1|AV916883 AV916883 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19p08 5', mRNA sequence
Length = 528
Score = 468 bits (236), Expect = e-130
Identities = 359/400 (89%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 129 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 188
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 189 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 248
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 249 aaccagtgggctcgggatgatcctgcatttattgtcattctaattcttttccttgtgttt 308
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 309 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatc 368
Query: 404 acttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgctgg 463
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 369 atctcggttgtgtttgtccatttcttgtttgctgggctagttttggccacactttgctgg 428
Query: 464 ttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcgtg 523
|| ||||| |||||||| |||| ||||||||||| |||||||| || || || || ||
Sbjct: 429 tttcttaccaattcttatctgagggaggaacctaatagccatgtggtcgaacagcgtgtc 488
Query: 524 gagtggctctatgcatttgacgttcattgtaactcgttct 563
|||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 489 gagtggctgtatgcatttgatgttcactgcaactcgttct 528
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 59 gatgctgcccacgacggcgtccaagggccggggggccgcccgctccgccc 108
>gb|BI778984.2|BI778984 EBro01_SQ002_G21_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_G21 5', mRNA sequence
Length = 526
Score = 442 bits (223), Expect = e-122
Identities = 337/375 (89%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 152 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 211
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 212 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 271
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 272 aaccagtgggctcgggatgatcctgcatttattgtcattctaattcttttccttgtgttt 331
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 332 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatc 391
Query: 404 acttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgctgg 463
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 392 atctcggttgtgtttgtccatttcttgtttgctgggctagttttggccacactttgctgg 451
Query: 464 ttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcgtg 523
|| ||||| |||||||| |||| ||||||||||| |||||||| || || || || ||
Sbjct: 452 tttcttaccaattcttatctgagggaggaacctaatagccatgtggtcgaacagcgtgtc 511
Query: 524 gagtggctctatgca 538
|||||||| ||||||
Sbjct: 512 gagtggctgtatgca 526
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 82 gatgctgcccacgacggcgtccaagggccggggggccgcccgctccgccc 131
>gb|BU998909.1|BU998909 HI12I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI12I16
5-PRIME, mRNA sequence
Length = 534
Score = 422 bits (213), Expect = e-116
Identities = 303/333 (90%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 202 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 261
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 262 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 321
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 322 aaccagtgggctcgggatgatcctgcatttattgtcattctaattcttttccttgtgttt 381
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 382 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctttaacaatc 441
Query: 404 acttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgctgg 463
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 atctcggttgtgtttgtccatttcttgtttgctgggctagttttggccacactttgctgg 501
Query: 464 ttccttacaaattcttacttgagagaggaacct 496
|| ||||| |||||||| |||| |||||||||
Sbjct: 502 tttcttaccaattcttatctgagggaggaacct 534
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 132 gatgctgcccacgacggcgtccaagggccggggggccgcccgctccgccc 181
>gb|BI956222.1|BI956222 HVSMEn0001E03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001E03f, mRNA sequence
Length = 1798
Score = 309 bits (156), Expect = 1e-082
Identities = 241/269 (89%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 164 ctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggtt 223
|||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||
Sbjct: 181 ctccgccgtattgtcaagtggcagcaaatggatatcgaatacacgttttggcaaatggtt 240
Query: 224 catctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaag 283
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 catctttgtacttcaccaaaagtagtctaccagcacaccaaatatcacaagcaaacaaag 300
Query: 284 aaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgttt 343
|||||||| || || ||||||||||||| | |||| ||||| ||||||||||| |||| |
Sbjct: 301 aaccagtgngctcgggatgatcctgcatntattgtcattctaattcttttccttgtgtgt 360
Query: 344 gcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaatc 403
|| |||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||
Sbjct: 361 gcgacatcagcttactgtgcagcgtttggagagagtgcgccccatgctgctntaacaatc 420
Query: 404 acttcggttgtgtttctccatttcttgtt 432
| |||||||||| | |||||||||||||
Sbjct: 421 atctcggttgtgtgt-tccatttcttgtt 448
Score = 54.0 bits (27), Expect = 1e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 93 gatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||| ||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 111 gatgctgcccacgacggcgtccaagggccggngggccgcccgctccgccc 160
>gb|AV922181.1|AV922181 AV922181 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19p08 3', mRNA sequence
Length = 620
Score = 248 bits (125), Expect = 4e-064
Identities = 263/309 (85%)
Strand = Plus / Minus
Query: 524 gagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatccta 583
|||||||| ||||||||||| ||||| || ||||||||||| ||||| || |||||||||
Sbjct: 596 gagtggctgtatgcatttgatgttcactgcaactcgttcttccctgcattcgtcatccta 537
Query: 584 tatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctttg 643
|||||| | || || ||| |||||||||| ||| |||| ||||| ||||| || || |
Sbjct: 536 tatgtgcttcaatactttttgtcgcctctgttgatcgcacatggattcttgcctgcccta 477
Query: 644 ttatctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctagga 703
||||| || || || ||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 476 ttatcaaacctcctgttcatggtggcaatttcttattatcactatctgaacttcctagga 417
Query: 704 tatgatgttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtc 763
|||||||||||||||||| | || |||||||||| ||| |||| |||||||| || |||
Sbjct: 416 tatgatgttcttccatttttggaccgaacaacatttttcttgtacccgattggacttgtc 357
Query: 764 atcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttctaagc 823
||||| || || ||||| |||||||| ||||||||||||| ||| |||||||||| |||
Sbjct: 356 atcattctatcgccactcatgatactcgtagggtttaatccaacacgatactttctgagc 297
Query: 824 ttgtacttc 832
|||||||||
Sbjct: 296 ttgtacttc 288
>gb|BE454747.1|BE454747 HVSMEh0095M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095M02f, mRNA sequence
Length = 912
Score = 234 bits (118), Expect = 5e-060
Identities = 261/309 (84%)
Strand = Plus / Minus
Query: 524 gagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatccta 583
|||||||| ||||||||| |||||||| ||||||||||| | ||| || |||||||||
Sbjct: 611 gagtggctgtatgcatttattgttcattgcaactcgttcttccntgcattcgtcatccta 552
Query: 584 tatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctttg 643
|||||| | || || ||| |||||||||| ||| |||| ||||| ||||| || || |
Sbjct: 551 tatgtgcttcaatactttttgtcgcctctgttgatcgcacatggattcttgcctgcccta 492
Query: 644 ttatctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctagga 703
||||| || || || ||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 491 ttatcaaacctcctgttcatggtggcaatttcttattatcactatctgaacttcctagga 432
Query: 704 tatgatgttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtc 763
|||||||||||||||||| | || |||||||||| ||| |||| |||||||| || |||
Sbjct: 431 tatgatgttcttccatttttggaccgaacaacatttttcttgtacccgattggacttgtc 372
Query: 764 atcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttctaagc 823
||||| || || ||||| |||||||| ||||||||||||| ||| |||||||||| |||
Sbjct: 371 atcattctatcgccactcatgatactcgtagggtttaatccaacacgatactttctgagc 312
Query: 824 ttgtacttc 832
|||||||||
Sbjct: 311 ttgtacttc 303
>gb|BE215119.2|BE215119 HV_CEb0005N21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005N21f, mRNA sequence
Length = 936
Score = 141 bits (71), Expect = 6e-032
Identities = 147/171 (85%), Gaps = 1/171 (0%)
Strand = Plus / Minus
Query: 663 tggtggcaatttcttattatcactacctgaactttctaggatatgatgttctt-ccattt 721
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 452 tggtggcaatttcttattatcactatctgaacttcttaggatatgatgttcttcccattt 393
Query: 722 ctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtctccactt 781
| || || ||||||| ||| |||| |||||||| || |||||||| || || |||||
Sbjct: 392 ttggaccgagcaacatttttcttgtacccgattggacttgtcatcattctatcgccactc 333
Query: 782 atgatactaatagggtttaatccgacaagatactttctaagcttgtacttc 832
|||||||| ||||||||||||| || |||||||||| ||||||||||||
Sbjct: 332 atgatactcgtagggtttaatccaacccgatactttctgagcttgtacttc 282
>gb|CB860069.1|CB860069 HI12I16w HI Hordeum vulgare subsp. vulgare cDNA clone HI12I16
3-PRIME, mRNA sequence
Length = 495
Score = 139 bits (70), Expect = 2e-031
Identities = 145/170 (85%)
Strand = Plus / Minus
Query: 663 tggtggcaatttcttattatcactacctgaactttctaggatatgatgttcttccatttc 722
|||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct: 466 tggtggcaattttttattatcactatttgaacttcctaggatatgatgtttttccatttt 407
Query: 723 tagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtctccactta 782
| || |||||||||| || |||| |||||||| || |||||||| || || ||||| |
Sbjct: 406 tggaccgaacaacattttttttgtacccgattggacttgtcatcattctatcgccactca 347
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttc 832
||||||| ||||||||||||| ||| |||||||| | ||||||||||||
Sbjct: 346 tgatactcgtagggtttaatccaacacgatactttttgagcttgtacttc 297
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,457
Number of Sequences: 312970
Number of extensions: 100457
Number of successful extensions: 26424
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26397
Number of HSP's gapped (non-prelim): 24
length of query: 1205
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1186
effective length of database: 169,188,109
effective search space: 200657097274
effective search space used: 200657097274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)