BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI951758.1|BI951758 HVSMEm0002J04f Hordeum vulgare green... 94 4e-017
gb|AV832952.1|AV832952 AV832952 K. Sato unpublished cDNA li... 62 1e-007
gb|BJ473916.1|BJ473916 BJ473916 K. Sato unpublished cDNA li... 62 1e-007
gb|BJ477369.1|BJ477369 BJ477369 K. Sato unpublished cDNA li... 62 1e-007
gb|BQ766121.1|BQ766121 EBro08_SQ005_I02_R root, 3 week, dro... 60 5e-007
gb|BJ475454.1|BJ475454 BJ475454 K. Sato unpublished cDNA li... 56 8e-006
gb|AV923902.1|AV923902 AV923902 K. Sato unpublished cDNA li... 48 0.002
gb|AV926843.1|AV926843 AV926843 K. Sato unpublished cDNA li... 48 0.002
gb|AV931736.1|AV931736 AV931736 K. Sato unpublished cDNA li... 48 0.002
gb|AV931964.1|AV931964 AV931964 K. Sato unpublished cDNA li... 48 0.002
gb|BJ469841.1|BJ469841 BJ469841 K. Sato unpublished cDNA li... 48 0.002
gb|BJ473254.1|BJ473254 BJ473254 K. Sato unpublished cDNA li... 48 0.002
gb|BM372123.2|BM372123 EBro03_SQ004_B12_R root, 3 week, wat... 48 0.002
gb|CA015467.1|CA015467 HT14G12r HT Hordeum vulgare subsp. v... 48 0.002
gb|CA028449.1|CA028449 HZ62A02r HZ Hordeum vulgare subsp. v... 48 0.002
gb|AV929045.1|AV929045 AV929045 K. Sato unpublished cDNA li... 44 0.030
gb|BJ476928.1|BJ476928 BJ476928 K. Sato unpublished cDNA li... 44 0.030
gb|BE216756.1|BE216756 HV_CEb0011H13f Hordeum vulgare seedl... 42 0.12
gb|BQ464293.1|BQ464293 HF01O01T HF Hordeum vulgare subsp. v... 42 0.12
gb|BU984870.1|BU984870 HF05F10r HF Hordeum vulgare subsp. v... 42 0.12
gb|CA007616.1|CA007616 HU08I04r HU Hordeum vulgare subsp. v... 42 0.12
gb|CK125325.1|CK125325 BES1824107l04 BES1824 Hordeum vulgar... 40 0.46
>gb|BI951758.1|BI951758 HVSMEm0002J04f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0002J04f, mRNA sequence
Length = 841
Score = 93.7 bits (47), Expect = 4e-017
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 3000 cttctcgaagttgaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgac 3059
||||||| ||| |||||||| | ||| ||||||| |||||||||||||||||||| |||
Sbjct: 157 cttctcgtagtggaaggtggcaacgaggatggcgagggcgtggacgtggttgacggagac 98
Query: 3060 cccgaactgctcctgcagcatcctggccctctcctcgcacatgctgacgaggcgctcctc 3119
||||||| ||||||||||| | ||| | |||||||||||||| |||| || ||||||
Sbjct: 97 ggcgaactggtcctgcagcatgcgggcgcgctcctcgcacatgcacacgatgccctcctc 38
Query: 3120 ggc 3122
|||
Sbjct: 37 ggc 35
>gb|AV832952.1|AV832952 AV832952 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal4h11, mRNA
sequence
Length = 622
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 570 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 620
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 457 gcctggatgacatcggcagtcattgccag 485
>gb|BJ473916.1|BJ473916 BJ473916 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17l08 3', mRNA sequence
Length = 650
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 557 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 607
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 444 gcctggatgacatcggcagtcattgccag 472
>gb|BJ477369.1|BJ477369 BJ477369 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal38p18 3', mRNA sequence
Length = 731
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 569 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 619
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 456 gcctggatgacatcggcagtcattgccag 484
>gb|BQ766121.1|BQ766121 EBro08_SQ005_I02_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_I02 5', mRNA sequence
Length = 685
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 579 ggttgcctcaaacccgtccatctctggcatctgaacatccat 620
||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 620 ggttgcctcaaacccatccatctctggcatttgaatatccat 579
>gb|BJ475454.1|BJ475454 BJ475454 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25l05 3', mRNA sequence
Length = 606
Score = 56.0 bits (28), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
|||||| | ||||| ||||||||| |||||||||||||| |||| ||||||
Sbjct: 555 tatttgccgggttgnctcaaacccatccatctctggcatttgaatatccat 605
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 442 gcctggatgacatcggcagtcattgccag 470
>gb|AV923902.1|AV923902 AV923902 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20a22 5', mRNA sequence
Length = 566
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 534 gttgcctggataacgtctgctgtcattgccag 503
>gb|AV926843.1|AV926843 AV926843 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p17 5', mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 538 gttgcctggataacgtctgctgtcattgccag 507
>gb|AV931736.1|AV931736 AV931736 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p17 3', mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 641 gttgcctggataacgtctgctgtcattgccag 672
>gb|AV931964.1|AV931964 AV931964 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26p01 3', mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 630 gttgcctggataacgtctgctgtcattgccag 661
>gb|BJ469841.1|BJ469841 BJ469841 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n04 5', mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 384 gttgcctggataacgtctgctgtcattgccag 353
>gb|BJ473254.1|BJ473254 BJ473254 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41f18 5', mRNA sequence
Length = 621
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 364 gttgcctggataacgtctgctgtcattgccag 333
>gb|BM372123.2|BM372123 EBro03_SQ004_B12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_B12 5', mRNA sequence
Length = 436
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 322 gttgcctggataacgtctgctgtcattgccag 291
>gb|CA015467.1|CA015467 HT14G12r HT Hordeum vulgare subsp. vulgare cDNA clone HT14G12
5-PRIME, mRNA sequence
Length = 599
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 430 gttgcctggataacgtctgctgtcattgccag 399
>gb|CA028449.1|CA028449 HZ62A02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62A02
5-PRIME, mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgccag 479
|||||||||||||| || ||||||||||||||
Sbjct: 565 gttgcctggataacgtctgctgtcattgccag 534
>gb|AV929045.1|AV929045 AV929045 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20m13 3', mRNA sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.030
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 448 gttgcctggataacatcggctgtcattgcc 477
|||||||||||||| || ||||||||||||
Sbjct: 641 gttgcctggataacgtctgctgtcattgcc 670
>gb|BJ476928.1|BJ476928 BJ476928 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n04 3', mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.030
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 448 gttgcctggataacatcggctgtcattgcc 477
|||||||||||||| || ||||||||||||
Sbjct: 645 gttgcctggataacgtctgctgtcattgcc 674
>gb|BE216756.1|BE216756 HV_CEb0011H13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011H13f, mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3287 cctcctcctctttctcttcctcctt 3311
|||||||||||||||||||| ||||
Sbjct: 794 cctcctcctctttctcttccccctt 770
>gb|BQ464293.1|BQ464293 HF01O01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01O01
5-PRIME, mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 53 gcctggatgacatcggcagtcattgccag 25
>gb|BU984870.1|BU984870 HF05F10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05F10
5-PRIME, mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 451 gcctggataacatcggctgtcattgccag 479
|||||||| |||||||| |||||||||||
Sbjct: 100 gcctggatgacatcggcagtcattgccag 72
>gb|CA007616.1|CA007616 HU08I04r HU Hordeum vulgare subsp. vulgare cDNA clone HU08I04
5-PRIME, mRNA sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1378 cacttgctgatgcttaaaccgatgccagt 1406
|||||||||||||| || |||||||||||
Sbjct: 218 cacttgctgatgctcaatccgatgccagt 190
>gb|CK125325.1|CK125325 BES1824107l04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L047 5-PRIME, mRNA sequence
Length = 488
Score = 40.1 bits (20), Expect = 0.46
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttg 3051
||||||||||||||||| ||||||
Sbjct: 292 atggcgatggcgtggacatggttg 315
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,699
Number of Sequences: 312970
Number of extensions: 309699
Number of successful extensions: 88522
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88475
Number of HSP's gapped (non-prelim): 47
length of query: 3330
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3310
effective length of database: 168,875,139
effective search space: 558976710090
effective search space used: 558976710090
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)