BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950225.2.1
         (3330 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI951758.1|BI951758  HVSMEm0002J04f Hordeum vulgare green...    94   4e-017
gb|AV832952.1|AV832952  AV832952 K. Sato unpublished cDNA li...    62   1e-007
gb|BJ473916.1|BJ473916  BJ473916 K. Sato unpublished cDNA li...    62   1e-007
gb|BJ477369.1|BJ477369  BJ477369 K. Sato unpublished cDNA li...    62   1e-007
gb|BQ766121.1|BQ766121  EBro08_SQ005_I02_R root, 3 week, dro...    60   5e-007
gb|BJ475454.1|BJ475454  BJ475454 K. Sato unpublished cDNA li...    56   8e-006
gb|AV923902.1|AV923902  AV923902 K. Sato unpublished cDNA li...    48   0.002
gb|AV926843.1|AV926843  AV926843 K. Sato unpublished cDNA li...    48   0.002
gb|AV931736.1|AV931736  AV931736 K. Sato unpublished cDNA li...    48   0.002
gb|AV931964.1|AV931964  AV931964 K. Sato unpublished cDNA li...    48   0.002
gb|BJ469841.1|BJ469841  BJ469841 K. Sato unpublished cDNA li...    48   0.002
gb|BJ473254.1|BJ473254  BJ473254 K. Sato unpublished cDNA li...    48   0.002
gb|BM372123.2|BM372123  EBro03_SQ004_B12_R root, 3 week, wat...    48   0.002
gb|CA015467.1|CA015467  HT14G12r HT Hordeum vulgare subsp. v...    48   0.002
gb|CA028449.1|CA028449  HZ62A02r HZ Hordeum vulgare subsp. v...    48   0.002
gb|AV929045.1|AV929045  AV929045 K. Sato unpublished cDNA li...    44   0.030
gb|BJ476928.1|BJ476928  BJ476928 K. Sato unpublished cDNA li...    44   0.030
gb|BE216756.1|BE216756  HV_CEb0011H13f Hordeum vulgare seedl...    42   0.12 
gb|BQ464293.1|BQ464293  HF01O01T HF Hordeum vulgare subsp. v...    42   0.12 
gb|BU984870.1|BU984870  HF05F10r HF Hordeum vulgare subsp. v...    42   0.12 
gb|CA007616.1|CA007616  HU08I04r HU Hordeum vulgare subsp. v...    42   0.12 
gb|CK125325.1|CK125325  BES1824107l04 BES1824 Hordeum vulgar...    40   0.46 
>gb|BI951758.1|BI951758 HVSMEm0002J04f Hordeum vulgare green seedling EST library HVcDNA0014
            (Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
            clone HVSMEm0002J04f, mRNA sequence
          Length = 841

 Score = 93.7 bits (47), Expect = 4e-017
 Identities = 104/123 (84%)
 Strand = Plus / Minus

                                                                        
Query: 3000 cttctcgaagttgaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgac 3059
            ||||||| ||| ||||||||  | ||| ||||||| |||||||||||||||||||| |||
Sbjct: 157  cttctcgtagtggaaggtggcaacgaggatggcgagggcgtggacgtggttgacggagac 98

                                                                        
Query: 3060 cccgaactgctcctgcagcatcctggccctctcctcgcacatgctgacgaggcgctcctc 3119
              ||||||| ||||||||||| | ||| | ||||||||||||||  |||| || ||||||
Sbjct: 97   ggcgaactggtcctgcagcatgcgggcgcgctcctcgcacatgcacacgatgccctcctc 38

               
Query: 3120 ggc 3122
            |||
Sbjct: 37   ggc 35
>gb|AV832952.1|AV832952 AV832952 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare top three leaves adult, heading stage Hordeum
           vulgare subsp. vulgare cDNA clone baal4h11, mRNA
           sequence
          Length = 622

 Score = 61.9 bits (31), Expect = 1e-007
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
           |||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 570 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 620

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 457 gcctggatgacatcggcagtcattgccag 485
>gb|BJ473916.1|BJ473916 BJ473916 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal17l08 3', mRNA sequence
          Length = 650

 Score = 61.9 bits (31), Expect = 1e-007
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
           |||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 557 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 607

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 444 gcctggatgacatcggcagtcattgccag 472
>gb|BJ477369.1|BJ477369 BJ477369 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal38p18 3', mRNA sequence
          Length = 731

 Score = 61.9 bits (31), Expect = 1e-007
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
           |||||| | ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 569 tatttgccgggttgcctcaaacccatccatctctggcatttgaatatccat 619

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 456 gcctggatgacatcggcagtcattgccag 484
>gb|BQ766121.1|BQ766121 EBro08_SQ005_I02_R root, 3 week, drought-stressed, cv Optic, EBro08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ005_I02 5', mRNA sequence
          Length = 685

 Score = 60.0 bits (30), Expect = 5e-007
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 579 ggttgcctcaaacccgtccatctctggcatctgaacatccat 620
           ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 620 ggttgcctcaaacccatccatctctggcatttgaatatccat 579
>gb|BJ475454.1|BJ475454 BJ475454 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal25l05 3', mRNA sequence
          Length = 606

 Score = 56.0 bits (28), Expect = 8e-006
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 570 tatttgtccggttgcctcaaacccgtccatctctggcatctgaacatccat 620
           |||||| | ||||| ||||||||| |||||||||||||| |||| ||||||
Sbjct: 555 tatttgccgggttgnctcaaacccatccatctctggcatttgaatatccat 605

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 442 gcctggatgacatcggcagtcattgccag 470
>gb|AV923902.1|AV923902 AV923902 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd20a22 5', mRNA sequence
          Length = 566

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 534 gttgcctggataacgtctgctgtcattgccag 503
>gb|AV926843.1|AV926843 AV926843 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd23p17 5', mRNA sequence
          Length = 609

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 538 gttgcctggataacgtctgctgtcattgccag 507
>gb|AV931736.1|AV931736 AV931736 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd23p17 3', mRNA sequence
          Length = 684

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 641 gttgcctggataacgtctgctgtcattgccag 672
>gb|AV931964.1|AV931964 AV931964 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd26p01 3', mRNA sequence
          Length = 673

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 630 gttgcctggataacgtctgctgtcattgccag 661
>gb|BJ469841.1|BJ469841 BJ469841 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal37n04 5', mRNA sequence
          Length = 655

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 384 gttgcctggataacgtctgctgtcattgccag 353
>gb|BJ473254.1|BJ473254 BJ473254 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal41f18 5', mRNA sequence
          Length = 621

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 364 gttgcctggataacgtctgctgtcattgccag 333
>gb|BM372123.2|BM372123 EBro03_SQ004_B12_R root, 3 week, waterlogged, cv Optic, EBro03
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro03_SQ004_B12 5', mRNA sequence
          Length = 436

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 322 gttgcctggataacgtctgctgtcattgccag 291
>gb|CA015467.1|CA015467 HT14G12r HT Hordeum vulgare subsp. vulgare cDNA clone HT14G12
           5-PRIME, mRNA sequence
          Length = 599

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 430 gttgcctggataacgtctgctgtcattgccag 399
>gb|CA028449.1|CA028449 HZ62A02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62A02
           5-PRIME, mRNA sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 448 gttgcctggataacatcggctgtcattgccag 479
           |||||||||||||| || ||||||||||||||
Sbjct: 565 gttgcctggataacgtctgctgtcattgccag 534
>gb|AV929045.1|AV929045 AV929045 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd20m13 3', mRNA sequence
          Length = 670

 Score = 44.1 bits (22), Expect = 0.030
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 448 gttgcctggataacatcggctgtcattgcc 477
           |||||||||||||| || ||||||||||||
Sbjct: 641 gttgcctggataacgtctgctgtcattgcc 670
>gb|BJ476928.1|BJ476928 BJ476928 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal37n04 3', mRNA sequence
          Length = 674

 Score = 44.1 bits (22), Expect = 0.030
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 448 gttgcctggataacatcggctgtcattgcc 477
           |||||||||||||| || ||||||||||||
Sbjct: 645 gttgcctggataacgtctgctgtcattgcc 674
>gb|BE216756.1|BE216756 HV_CEb0011H13f Hordeum vulgare seedling green leaf EST library
            HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
            vulgare cDNA clone HV_CEb0011H13f, mRNA sequence
          Length = 910

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 3287 cctcctcctctttctcttcctcctt 3311
            |||||||||||||||||||| ||||
Sbjct: 794  cctcctcctctttctcttccccctt 770
>gb|BQ464293.1|BQ464293 HF01O01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01O01
           5-PRIME, mRNA sequence
          Length = 658

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 53  gcctggatgacatcggcagtcattgccag 25
>gb|BU984870.1|BU984870 HF05F10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05F10
           5-PRIME, mRNA sequence
          Length = 568

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 451 gcctggataacatcggctgtcattgccag 479
           |||||||| |||||||| |||||||||||
Sbjct: 100 gcctggatgacatcggcagtcattgccag 72
>gb|CA007616.1|CA007616 HU08I04r HU Hordeum vulgare subsp. vulgare cDNA clone HU08I04
            5-PRIME, mRNA sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1378 cacttgctgatgcttaaaccgatgccagt 1406
            |||||||||||||| || |||||||||||
Sbjct: 218  cacttgctgatgctcaatccgatgccagt 190
>gb|CK125325.1|CK125325 BES1824107l04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
            MPMGp2010L047 5-PRIME, mRNA sequence
          Length = 488

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 3028 atggcgatggcgtggacgtggttg 3051
            ||||||||||||||||| ||||||
Sbjct: 292  atggcgatggcgtggacatggttg 315
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,699
Number of Sequences: 312970
Number of extensions: 309699
Number of successful extensions: 88522
Number of sequences better than  0.5: 22
Number of HSP's better than  0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88475
Number of HSP's gapped (non-prelim): 47
length of query: 3330
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3310
effective length of database: 168,875,139
effective search space: 558976710090
effective search space used: 558976710090
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)