BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 ... 303 5e-081
gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. v... 295 1e-078
gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. v... 280 7e-074
gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. v... 274 4e-072
gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. v... 236 9e-061
gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. v... 210 5e-053
gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots... 165 3e-039
gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. v... 165 3e-039
gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. v... 165 3e-039
gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 ... 153 1e-035
gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA li... 137 6e-031
gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedl... 117 6e-025
gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA li... 98 6e-019
gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. v... 92 3e-017
gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. v... 62 3e-008
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.028
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.11
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.11
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.11
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.11
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.11
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.11
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.11
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.44
gb|BQ660005.1|BQ660005 HG01J11u HG Hordeum vulgare subsp. v... 38 0.44
gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. v... 38 0.44
>gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102N13f, mRNA sequence
Length = 729
Score = 303 bits (153), Expect = 5e-081
Identities = 293/343 (85%)
Strand = Plus / Minus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaaca 292
||||| ||||| ||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 376 taccagatgttgactatttggcgattcacaaacattggccgcgcaaaatgctcgtaaaca 317
Query: 293 taggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatac 352
|| |||| ||||||||| ||||| ||||| | ||||||| |||||||| ||| ||||
Sbjct: 316 taagcagcaccattgaagcaaggaaagactagccagcagttgaagaacagttttccatag 257
Query: 353 gaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaat 412
| ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||||
Sbjct: 256 ggccagaatggaagccattcaagtatcggagcaaaagtgagctcaaacaaagtgataaac 197
Query: 413 gagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctata 472
|||| |||||||||||| ||||| |||||||||||||| || |||||| || ||
Sbjct: 196 gagtacagcacccagtaagtaagccattgctgatcatctacttgagattttgtttcaatt 137
Query: 473 gctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcg 532
||||| ||||| |||||||||||||||||||| || | ||||||||||| ||||| |||
Sbjct: 136 gctctcacagaggcatatagaggataagcaagcgaaaccagtggcccggcgaggacgtcg 77
Query: 533 aagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 76 aagttcttggccagcaccttgaggaaagatccggaccccatct 34
>gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. vulgare cDNA clone HF14H19
5-PRIME, mRNA sequence
Length = 602
Score = 295 bits (149), Expect = 1e-078
Identities = 292/343 (85%)
Strand = Plus / Minus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaaca 292
||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 356 taccagatgttgactatttggcgattcacaaacattggccgcgcgaaatgctcgtaaaca 297
Query: 293 taggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatac 352
|| |||| ||||||||| ||||| ||||| | ||||||| |||||||| ||| ||||
Sbjct: 296 taagcagcaccattgaagcaaggaaagactagccagcagttgaagaacagttttccatag 237
Query: 353 gaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaat 412
| ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||||
Sbjct: 236 ggccagaatggaagccattcaagtatcggagcaaaagtgagctcaaacaaagtgataaac 177
Query: 413 gagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctata 472
|||| |||||||||||| ||||| |||||||||||||| || |||||| || ||
Sbjct: 176 gagtacagcacccagtaagtaagccattgctgatcatctacttgagattttgtttcaatt 117
Query: 473 gctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcg 532
||||| ||||| |||||||||||||||||||| || | ||||||||||| ||||| |||
Sbjct: 116 gctctcacagaggcatatagaggataagcaagcgaaaccagtggcccggcgaggacgtcg 57
Query: 533 aagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 56 aagttcttggccagcaccttgaggaaagatccggaccccatct 14
>gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
5-PRIME, mRNA sequence
Length = 546
Score = 280 bits (141), Expect = 7e-074
Identities = 291/343 (84%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaaca 292
||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 356 taccagatgttgactatttggcgattcacaaacattggccgcgcgaaatgctcgtaaaca 297
Query: 293 taggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatac 352
|| |||| ||||||||| ||||| ||||| | ||||||| |||||||| ||| ||||
Sbjct: 296 taagcagcaccattgaagcaaggaaagactagccagcagttgaagaacagttttccatag 237
Query: 353 gaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaat 412
| ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||||
Sbjct: 236 ggccagaatggaagccattcaagtatcggagcaaaagtgagctcaaacaaagtgataaac 177
Query: 413 gagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctata 472
|||| |||||||||||| ||||| |||||||||||||| || |||||| || ||
Sbjct: 176 gagtacagcacccagtaagtaagccattgctgatcatctacttgagattttgtttcaatt 117
Query: 473 gctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcg 532
||||| ||||| |||||||||||||||||||| || | ||||||||||| ||||| |||
Sbjct: 116 gctctcacagaggcatatagaggataagcaagcgaaaccagtggcccggcgaggacgtcg 57
Query: 533 aagttattggccagcaccttgaggaaagatccggaccccatct 575
||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 56 aagttcttggccagcacctt-aggaaagatccggaccccatct 15
>gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
5-PRIME, mRNA sequence
Length = 574
Score = 274 bits (138), Expect = 4e-072
Identities = 281/332 (84%)
Strand = Plus / Minus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaaca 292
||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 332 taccagatgttgactatttggcgattcacaaacattggccgcgcgaaatgctcgtaaaca 273
Query: 293 taggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatac 352
|| |||| ||||||||| ||||| ||||| | ||||||| |||||||| ||| ||||
Sbjct: 272 taagcagcaccattgaagcaaggaaagactagccagcagttgaagaacagttttccatag 213
Query: 353 gaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaat 412
| ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||||
Sbjct: 212 ggccagaatggaagccattcaagtatcggagcaaaagtgagctcaaacaaagtgataaac 153
Query: 413 gagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctata 472
|||| |||||||||||| ||||| |||||||||||||| || |||||| || ||
Sbjct: 152 gagtacagcacccagtaagtaagccattgctgatcatctacttgagattttgtttcaatt 93
Query: 473 gctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcg 532
||||| ||||| |||||||||||||||||||| || | ||||||||||| ||||| |||
Sbjct: 92 gctctcacagaggcatatagaggataagcaagcgaaaccagtggcccggcgaggacgtcg 33
Query: 533 aagttattggccagcaccttgaggaaagatcc 564
||||| ||||||||||||||||||||||||||
Sbjct: 32 aagttcttggccagcaccttgaggaaagatcc 1
>gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
5-PRIME, mRNA sequence
Length = 530
Score = 236 bits (119), Expect = 9e-061
Identities = 242/285 (84%)
Strand = Plus / Minus
Query: 291 cataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcat 350
|||| |||| ||||||||| ||||| ||||| | ||||||| |||||||| ||| |||
Sbjct: 530 cataagcagcaccattgaagcaaggaaagactagccagcagttgaagaacagttttccat 471
Query: 351 acgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataa 410
| | ||| ||||||||||| || | || ||||||||||| |||||||||||||||||||
Sbjct: 470 agggccagaatggaagccattcaagtatcggagcaaaagtgagctcaaacaaagtgataa 411
Query: 411 atgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctcta 470
| |||| |||||||||||| ||||| |||||||||||||| || |||||| || |
Sbjct: 410 acgagtacagcacccagtaagtaagccattgctgatcatctacttgagattttgtttcaa 351
Query: 471 tagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacat 530
| ||||| ||||| |||||||||||||||||||| || | ||||||||||| ||||| |
Sbjct: 350 ttgctctcacagaggcatatagaggataagcaagcgaaaccagtggcccggcgaggacgt 291
Query: 531 cgaagttattggccagcaccttgaggaaagatccggaccccatct 575
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 cgaagttcttggccagcaccttgaggaaagatccggaccccatct 246
>gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M15
5-PRIME, mRNA sequence
Length = 333
Score = 210 bits (106), Expect = 5e-053
Identities = 212/249 (85%)
Strand = Plus / Minus
Query: 327 agcagttaaagaacagctttgcatacgaccaaaatggaagccactcgataattggagcaa 386
||||||| ||| |||| ||| |||| | ||| ||||||||||| || | || ||||| |
Sbjct: 317 agcagttgaagnacagttttccatagggccagaatggaagccattcaagtatcggagcna 258
Query: 387 aagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtgagccactgctgat 446
|||| |||||||||||||||||||| |||| |||||||||||| ||||| |||||||
Sbjct: 257 aagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccattgctgat 198
Query: 447 catctacaggattttttgtctctatagctctaacagaagcatatagaggataagcaagtg 506
||||||| || |||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct: 197 catctacttgagattttgtttcaattgctctcacagaggcatatagaggataagcaagcg 138
Query: 507 atatgagtggcccggcaaggacatcgaagttattggccagcaccttgaggaaagatccgg 566
| | ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 137 aaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaagatccgg 78
Query: 567 accccatct 575
|||||||||
Sbjct: 77 accccatct 69
>gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03T 5', mRNA sequence
Length = 700
Score = 165 bits (83), Expect = 3e-039
Identities = 277/345 (80%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 458 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 399
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 398 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 339
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 338 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 279
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||
Sbjct: 278 aaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgtttc 219
Query: 469 tatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggac 528
||| |||| |||||| ||||| ||||||||||| ||||| | | |||||||| || ||
Sbjct: 218 tattgctcgaacagacgcatacagaggataagcgagtgaaactatgggcccggcgagaac 159
Query: 529 atcgaagttattggccagcaccttgaggaaagatccggaccccat 573
||| | ||| || | |||||||||||||||||||||||||||||
Sbjct: 158 atccaggttgctgacgagcaccttgaggaaagatccggaccccat 114
>gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L15
5-PRIME, mRNA sequence
Length = 639
Score = 165 bits (83), Expect = 3e-039
Identities = 277/345 (80%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 454 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 395
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 394 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 335
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 334 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 275
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||
Sbjct: 274 aaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgtttc 215
Query: 469 tatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggac 528
||| |||| |||||| ||||| ||||||||||| ||||| | | |||||||| || ||
Sbjct: 214 tattgctcgaacagacgcatacagaggataagcgagtgaaactatgggcccggcgagaac 155
Query: 529 atcgaagttattggccagcaccttgaggaaagatccggaccccat 573
||| | ||| || | |||||||||||||||||||||||||||||
Sbjct: 154 atccaggttgctgacgagcaccttgaggaaagatccggaccccat 110
>gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13A06
5-PRIME, mRNA sequence
Length = 558
Score = 165 bits (83), Expect = 3e-039
Identities = 277/345 (80%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 433 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 374
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 373 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 314
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 313 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 254
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||
Sbjct: 253 aaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgtttc 194
Query: 469 tatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggac 528
||| |||| |||||| ||||| ||||||||||| ||||| | | |||||||| || ||
Sbjct: 193 tattgctcgaacagacgcatacagaggataagcgagtgaaactatgggcccggcgagaac 134
Query: 529 atcgaagttattggccagcaccttgaggaaagatccggaccccat 573
||| | ||| || | |||||||||||||||||||||||||||||
Sbjct: 133 atccaggttgctgacgagcaccttgaggaaagatccggaccccat 89
>gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087D14f, mRNA sequence
Length = 486
Score = 153 bits (77), Expect = 1e-035
Identities = 256/319 (80%)
Strand = Plus / Minus
Query: 255 ggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagnaccattgaaccaag 314
||||||||| ||||||||| |||||| || ||||||| || | ||| || || | |
Sbjct: 482 ggttcacaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaagtagg 423
Query: 315 gcaagaccaannagcagttaaagaacagctttgcatacgaccaaaatggaagccactcga 374
|||||||||| |||| || || ||||| ||| | || ||||| || || ||||| || |
Sbjct: 422 gcaagaccaaccagcaattgaaaaacagttttccgtaagaccanaaagggagccattcaa 363
Query: 375 taattggagcaaaagttagctcaaacaaagtgataaatgagtnnnacacccagtaagtga 434
| | || |||||| || ||||| |||| ||||||||| |||| |||||||||||||||
Sbjct: 362 ttactgcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaagtga 303
Query: 435 gccactgctgatcatctacaggattttttgtctctatagctctaacagaagcatatagag 494
|||| ||||||||||||| |||| |||||| ||||| |||| |||||| ||||| ||||
Sbjct: 302 gccattgctgatcatctataggagattttgtttctattgctcgaacagacgcatacagag 243
Query: 495 gataagcaagtgatatgagtggcccggcaaggacatcgaagttattggccagcaccttga 554
||||||| ||||| | | |||||||| || ||||| | ||| || | ||||||||||
Sbjct: 242 gataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcaccttga 183
Query: 555 ggaaagatccggaccccat 573
|||||||||||||||||||
Sbjct: 182 ggaaagatccggaccccat 164
>gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 5', mRNA sequence
Length = 637
Score = 137 bits (69), Expect = 6e-031
Identities = 224/279 (80%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 347 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 288
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 287 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 228
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 227 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 168
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||
Sbjct: 167 aaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgtttc 108
Query: 469 tatagctctaacagaagcatatagaggataagcaagtga 507
||| |||| |||||| ||||| ||||||||||| |||||
Sbjct: 107 tattgctcgaacagacgcatacagaggataagcgagtga 69
>gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A15f, mRNA sequence
Length = 551
Score = 117 bits (59), Expect = 6e-025
Identities = 208/261 (79%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 549 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 490
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 489 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 430
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 429 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 370
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||
Sbjct: 369 aaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgtttc 310
Query: 469 tatagctctaacagaagcata 489
||| |||| |||||| |||||
Sbjct: 309 tattgctcgaacagacgcata 289
Score = 58.0 bits (29), Expect = 5e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 545 agcaccttgaggaaagatccggaccccat 573
|||||||||||||||||||||||||||||
Sbjct: 127 agcaccttgaggaaagatccggaccccat 99
>gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 3', mRNA sequence
Length = 675
Score = 97.6 bits (49), Expect = 6e-019
Identities = 177/223 (79%)
Strand = Plus / Plus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| || | ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 453 aatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcata 512
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| || | ||| || || | ||||||||||| |||| || || ||||| ||| |
Sbjct: 513 aacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttcc 572
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
|| |||||||| || ||||| || || | || |||||| || ||||| |||| ||||||
Sbjct: 573 gtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtgat 632
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatct 451
||| |||| ||||||||||||||||||| ||||||||||||
Sbjct: 633 aaacgagtacaacacccagtaagtgagccattgctgatcatct 675
>gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17C06
5-PRIME, mRNA sequence
Length = 310
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 440 tgctgatcatctacaggattttttgtctctatagctctaacagaagcatatagaggataa 499
||||||||||||| |||| |||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 306 tgctgatcatctataggagattttgtttctattgctcgaacagacgcatacagaggataa 247
Query: 500 gcaagtgatatgagtggcccggcaaggacatcgaagttattggccagcaccttgaggaaa 559
|| ||||| | | |||||||| || ||||| | ||| || | |||||||||||||||
Sbjct: 246 gcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcaccttgaggaaa 187
Query: 560 gatccggaccccat 573
||||||||||||||
Sbjct: 186 gatccggaccccat 173
>gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
3-PRIME, mRNA sequence
Length = 625
Score = 61.9 bits (31), Expect = 3e-008
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaac 291
||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 567 taccagatgttgactatttggcgattcacaaacattggccgcgcgaaatgctcgtaaac 625
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 804 cgtacctgcccgggcggccgc 824
|||||||||||||||||||||
Sbjct: 340 cgtacctgcccgggcggccgc 360
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgc 10
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 271 gtacctgcccgggcggccgc 290
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgc 260
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 328 gtacctgcccgggcggccgc 347
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgc 281
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 334 gtacctgcccgggcggccgc 353
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgc 519
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgc 433
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 806 tacctgcccgggcggccgc 824
|||||||||||||||||||
Sbjct: 312 tacctgcccgggcggccgc 330
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccg 823
|||||||||||||||||||
Sbjct: 194 gtacctgcccgggcggccg 212
>gb|BQ660005.1|BQ660005 HG01J11u HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
3-PRIME, mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.44
Identities = 49/62 (79%)
Strand = Plus / Plus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
|||||||||||||| |||| |||||||| || ||| ||||||||||| |||||
Sbjct: 470 gtagacttgctgattagcttctcaaatgcttctggtccatttagttcaatatatttctct 529
Query: 182 gc 183
||
Sbjct: 530 gc 531
>gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
3-PRIME, mRNA sequence
Length = 558
Score = 38.2 bits (19), Expect = 0.44
Identities = 49/62 (79%)
Strand = Plus / Plus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
|||||||||||||| |||| |||||||| || ||| ||||||||||| |||||
Sbjct: 437 gtagacttgctgattagcttctcaaatgcttctggtccatttagttcaatatatttctct 496
Query: 182 gc 183
||
Sbjct: 497 gc 498
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,727
Number of Sequences: 312970
Number of extensions: 57727
Number of successful extensions: 15344
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15283
Number of HSP's gapped (non-prelim): 55
length of query: 824
length of database: 175,134,539
effective HSP length: 19
effective length of query: 805
effective length of database: 169,188,109
effective search space: 136196427745
effective search space used: 136196427745
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)