BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943885.2.1
(581 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU973397.1|BU973397 HB24M20r BC Hordeum vulgare subsp. v... 70 9e-011
gb|CB859283.1|CB859283 HI09P17w HI Hordeum vulgare subsp. v... 68 3e-010
gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedl... 62 2e-008
emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragme... 58 3e-007
gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedl... 56 1e-006
gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedl... 56 1e-006
gb|BI947779.1|BI947779 HVSMEl0006O13f Hordeum vulgare spike... 52 2e-005
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 52 2e-005
gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day ger... 50 8e-005
gb|CB882618.1|CB882618 HL02G02w HL Hordeum vulgare subsp. v... 50 8e-005
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 48 3e-004
gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. v... 48 3e-004
gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedl... 46 0.001
gb|BI957863.1|BI957863 HVSMEn0011M19f Hordeum vulgare rachi... 46 0.001
gb|BG417500.2|BG417500 HVSMEk0017N08f Hordeum vulgare testa... 46 0.001
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 46 0.001
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 46 0.001
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 46 0.001
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 46 0.001
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 46 0.001
gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. v... 46 0.001
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 44 0.005
gb|AJ462599.1|AJ462599 AJ462599 S00002 Hordeum vulgare subs... 44 0.005
gb|BJ450621.1|BJ450621 BJ450621 K. Sato unpublished cDNA li... 44 0.005
gb|BJ458043.1|BJ458043 BJ458043 K. Sato unpublished cDNA li... 44 0.005
gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. v... 44 0.005
gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. v... 44 0.005
gb|CA000677.1|CA000677 HS07F12u HS Hordeum vulgare subsp. v... 44 0.005
gb|CA001229.1|CA001229 HS18N07u HS Hordeum vulgare subsp. v... 44 0.005
gb|CA001379.1|CA001379 HS18D16u HS Hordeum vulgare subsp. v... 44 0.005
gb|CB859573.1|CB859573 HI10O06w HI Hordeum vulgare subsp. v... 44 0.005
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 44 0.005
gb|BE411730.1|BE411730 ISC008.F09F990729 ITEC ISC Barley Le... 42 0.020
gb|BF260368.2|BF260368 HVSMEf0021M24f Hordeum vulgare seedl... 42 0.020
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 42 0.020
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 42 0.020
gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. v... 42 0.020
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 42 0.020
gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. v... 42 0.020
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 40 0.078
gb|BF621993.2|BF621993 HVSMEa0001H17f Hordeum vulgare seedl... 40 0.078
gb|BF624531.2|BF624531 HVSMEa0017A18f Hordeum vulgare seedl... 40 0.078
gb|BF624759.2|BF624759 HVSMEa0017K18f Hordeum vulgare seedl... 40 0.078
gb|BF627261.2|BF627261 HVSMEb0004G05f Hordeum vulgare seedl... 40 0.078
gb|BF629551.2|BF629551 HVSMEb0013E21f Hordeum vulgare seedl... 40 0.078
gb|BG300697.1|BG300697 HVSMEb0018A15f Hordeum vulgare seedl... 40 0.078
gb|BI957071.1|BI957071 HVSMEn0007E10f Hordeum vulgare rachi... 40 0.078
gb|BE455450.3|BE455450 HVSMEg0017D11f Hordeum vulgare pre-a... 40 0.078
gb|BG345062.2|BG345062 HVSMEg0018I04f Hordeum vulgare pre-a... 40 0.078
gb|AV909888.1|AV909888 AV909888 K. Sato unpublished cDNA li... 40 0.078
gb|AV909968.1|AV909968 AV909968 K. Sato unpublished cDNA li... 40 0.078
gb|AV911987.1|AV911987 AV911987 K. Sato unpublished cDNA li... 40 0.078
gb|AV912999.1|AV912999 AV912999 K. Sato unpublished cDNA li... 40 0.078
gb|BJ447932.1|BJ447932 BJ447932 K. Sato unpublished cDNA li... 40 0.078
gb|BJ448169.1|BJ448169 BJ448169 K. Sato unpublished cDNA li... 40 0.078
gb|BJ450561.1|BJ450561 BJ450561 K. Sato unpublished cDNA li... 40 0.078
gb|BJ455245.1|BJ455245 BJ455245 K. Sato unpublished cDNA li... 40 0.078
gb|BJ455675.1|BJ455675 BJ455675 K. Sato unpublished cDNA li... 40 0.078
gb|BJ455890.1|BJ455890 BJ455890 K. Sato unpublished cDNA li... 40 0.078
gb|BJ459946.1|BJ459946 BJ459946 K. Sato unpublished cDNA li... 40 0.078
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 40 0.078
gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA li... 40 0.078
gb|BJ469021.1|BJ469021 BJ469021 K. Sato unpublished cDNA li... 40 0.078
gb|BJ469419.1|BJ469419 BJ469419 K. Sato unpublished cDNA li... 40 0.078
gb|BJ472570.1|BJ472570 BJ472570 K. Sato unpublished cDNA li... 40 0.078
gb|BQ460320.1|BQ460320 HA06J17r HA Hordeum vulgare subsp. v... 40 0.078
gb|BI780814.2|BI780814 EBes01_SQ002_E14_R embryo sac, 4-6 D... 40 0.078
gb|BI778406.2|BI778406 EBro07_SQ003_D11_R root, 3 week, red... 40 0.078
gb|BQ768393.1|BQ768393 EBro08_SQ011_G17_R root, 3 week, dro... 40 0.078
gb|BU966817.1|BU966817 HB02H06r BC Hordeum vulgare subsp. v... 40 0.078
gb|BU966962.1|BU966962 HB02O10r BC Hordeum vulgare subsp. v... 40 0.078
gb|BU982726.1|BU982726 HA27G22r HA Hordeum vulgare subsp. v... 40 0.078
gb|CB877741.1|CB877741 HP06A06T HP Hordeum vulgare subsp. v... 40 0.078
gb|BJ452398.2|BJ452398 BJ452398 K. Sato unpublished cDNA li... 40 0.078
gb|BE195322.1|BE195322 HVSMEh0088O15f Hordeum vulgare 5-45 ... 38 0.31
gb|BF630152.2|BF630152 HVSMEb0008C05f Hordeum vulgare seedl... 38 0.31
gb|BG300881.1|BG300881 HVSMEb0018M18f Hordeum vulgare seedl... 38 0.31
gb|BF256192.2|BF256192 HVSMEf0009B02f Hordeum vulgare seedl... 38 0.31
gb|BI947771.1|BI947771 HVSMEl0006N11f Hordeum vulgare spike... 38 0.31
gb|BF263267.2|BF263267 HV_CEa0006E19f Hordeum vulgare seedl... 38 0.31
gb|BG414475.2|BG414475 HVSMEk0002J22f Hordeum vulgare testa... 38 0.31
gb|BG415400.2|BG415400 HVSMEk0006F13f Hordeum vulgare testa... 38 0.31
gb|BM096926.1|BM096926 EBro07_SQ003_P16_R root, 3 week, red... 38 0.31
gb|AV918894.1|AV918894 AV918894 K. Sato unpublished cDNA li... 38 0.31
gb|AV925980.1|AV925980 AV925980 K. Sato unpublished cDNA li... 38 0.31
gb|AV927070.1|AV927070 AV927070 K. Sato unpublished cDNA li... 38 0.31
gb|AV928765.1|AV928765 AV928765 K. Sato unpublished cDNA li... 38 0.31
gb|AV928766.1|AV928766 AV928766 K. Sato unpublished cDNA li... 38 0.31
gb|AV929458.1|AV929458 AV929458 K. Sato unpublished cDNA li... 38 0.31
gb|AV931900.1|AV931900 AV931900 K. Sato unpublished cDNA li... 38 0.31
gb|BJ448025.1|BJ448025 BJ448025 K. Sato unpublished cDNA li... 38 0.31
gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. v... 38 0.31
gb|BI780500.2|BI780500 EBem08_SQ001_I14_R embryo, 40 DPA, n... 38 0.31
gb|BQ763397.1|BQ763397 EBro02_SQ008_B12_R root, 3 week, hyd... 38 0.31
gb|BQ763564.1|BQ763564 EBro02_SQ008_E19 _R root, 3 week, hy... 38 0.31
gb|CA001112.1|CA001112 HS05G15u HS Hordeum vulgare subsp. v... 38 0.31
gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. v... 38 0.31
gb|CB875660.1|CB875660 HX08P17w HX Hordeum vulgare subsp. v... 38 0.31
gb|CB881181.1|CB881181 HM09A05w HM Hordeum vulgare subsp. v... 38 0.31
gb|CB881344.1|CB881344 HM09I09w HM Hordeum vulgare subsp. v... 38 0.31
gb|CB881910.1|CB881910 HM11E09w HM Hordeum vulgare subsp. v... 38 0.31
emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for p... 38 0.31
>gb|BU973397.1|BU973397 HB24M20r BC Hordeum vulgare subsp. vulgare cDNA clone HB24M20
5-PRIME, mRNA sequence
Length = 172
Score = 69.9 bits (35), Expect = 9e-011
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 425 aaggccaaggaggccatgcaggaaggaggaagctctgacaagaacattgcagaattcgca 484
||||| |||||||| |||||| ||||||||||||| |||||||| ||||| || || ||
Sbjct: 30 aaggctaaggaggcaatgcagaaaggaggaagctcggacaagaatattgctgagttngcg 89
Query: 485 gccaagtatt 494
||||||||||
Sbjct: 90 gccaagtatt 99
>gb|CB859283.1|CB859283 HI09P17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09P17
3-PRIME, mRNA sequence
Length = 560
Score = 67.9 bits (34), Expect = 3e-010
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 427 ggccaaggaggccatgcaggaaggaggaagctctgacaagaacattgcagaattcgcagc 486
|||||||||||| ||||||||||| || || ||||| ||||| ||||| ||||| |||||
Sbjct: 402 ggccaaggaggcgatgcaggaaggcgggagttctgataagaatattgctgaatttgcagc 461
Query: 487 caagtattta 496
|||||||||
Sbjct: 462 taagtattta 471
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 236 ccaatggtggcgatgccccagtgggcggaccagccgacgacggccaaatatgtggagagc 295
||||||||||||||||| | || ||| |||||||| || ||||| || || |||||||||
Sbjct: 202 ccaatggtggcgatgccacggtcggccgaccagccaaccacggcaaagtacgtggagagc 261
Query: 296 gcgtggggga 305
|| |||||||
Sbjct: 262 gcatggggga 271
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 337 gaggaaggaggtggagaggtgcataagggaggtgatgg 374
|||| ||||||||||||||||||| ||| |||||||||
Sbjct: 312 gagggaggaggtggagaggtgcatcaggaaggtgatgg 349
>gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011G05f, mRNA sequence
Length = 797
Score = 61.9 bits (31), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 416 tggatgcacaaggccaaggaggccatgcaggaaggaggaagctctgacaag 466
|||||||| |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 351 tggatgcaaaaggccaaggaggcaatgcaagaaggaggaagttcagacaag 401
Score = 40.1 bits (20), Expect = 0.078
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 342 aggaggtggagaggtgcataagggaggtgatgggcggggagaggaagcatgtgtac 397
||||||| ||||||||||| | |||||||||| |||||||| ||| ||| ||||
Sbjct: 277 aggaggttgagaggtgcattatagaggtgatggatggggagagaaaggatgagtac 332
>emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragment; clone MWG0527
Length = 580
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactcgacg 211
||||||||||||||| |||||||||||||||||
Sbjct: 40 tgcttcctgacgcacggcgggtggaactcgacg 72
>gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004C17f, mRNA sequence
Length = 873
Score = 56.0 bits (28), Expect = 1e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 180 gcttcctgacgcactgcgggtggaactc 207
||||||||||||||||||||||||||||
Sbjct: 54 gcttcctgacgcactgcgggtggaactc 81
>gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F10f, mRNA sequence
Length = 602
Score = 56.0 bits (28), Expect = 1e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 180 gcttcctgacgcactgcgggtggaactc 207
||||||||||||||||||||||||||||
Sbjct: 23 gcttcctgacgcactgcgggtggaactc 50
>gb|BI947779.1|BI947779 HVSMEl0006O13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006O13f, mRNA sequence
Length = 1003
Score = 52.0 bits (26), Expect = 2e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 425 aaggccaaggaggccatgcaggaaggaggaagctctgacaagaacattgcagaattcgca 484
||||| |||||||| ||||| ||||||||||||| ||||| || ||||| || || ||
Sbjct: 281 aaggctaaggaggcaatgcataaaggaggaagctcggacaaaaatattgctgagtttgcg 340
Query: 485 gccaagtatt 494
||||||||||
Sbjct: 341 gccaagtatt 350
Score = 40.1 bits (20), Expect = 0.078
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 164 cacaaggccacaggttgcttcctgacgcactgcgggtggaactc 207
||||||||||||||||| ||| | || ||||| || ||||||||
Sbjct: 10 cacaaggccacaggttgtttcttaactcactgtggatggaactc 53
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 2e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 182 ttcctgacgcactgcgggtggaactcgacg 211
|||||||||||| |||||||||||||||||
Sbjct: 287 ttcctgacgcacagcgggtggaactcgacg 316
>gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_N12 5', mRNA sequence
Length = 340
Score = 50.1 bits (25), Expect = 8e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactc 207
|||||| ||||||||||||||||||||||
Sbjct: 126 tgcttcgtgacgcactgcgggtggaactc 154
>gb|CB882618.1|CB882618 HL02G02w HL Hordeum vulgare subsp. vulgare cDNA clone HL02G02
3-PRIME, mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactcgacg 211
|||||| ||||||||||||| ||||||||||||
Sbjct: 565 tgcttcgtgacgcactgcggttggaactcgacg 597
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 180 gcttcctgacgcactgcgggtggaactcgacg 211
||||||||||||||||||| |||||| |||||
Sbjct: 298 gcttcctgacgcactgcggctggaacgcgacg 329
>gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. vulgare cDNA clone HP11G23
5-PRIME, mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 180 gcttcctgacgcactgcgggtggaactcgacg 211
||||||||||||||||||| |||||| |||||
Sbjct: 46 gcttcctgacgcactgcggctggaacgcgacg 77
>gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B13f, mRNA sequence
Length = 875
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 186 tgacgcactgcgggtggaactcg 208
|||||||||||||||||||||||
Sbjct: 301 tgacgcactgcgggtggaactcg 323
>gb|BI957863.1|BI957863 HVSMEn0011M19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011M19f, mRNA sequence
Length = 1178
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 182 ttcctgacgcactgcgggtggaactcg 208
||||||||||||||||| |||||||||
Sbjct: 546 ttcctgacgcactgcggctggaactcg 520
>gb|BG417500.2|BG417500 HVSMEk0017N08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017N08f, mRNA sequence
Length = 824
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 182 ttcctgacgcactgcgggtggaactcg 208
||||||||||||||||| |||||||||
Sbjct: 120 ttcctgacgcactgcggctggaactcg 146
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 181 cttcctgacgcactgcgggtggaactc 207
|||| ||||||||||||||||||||||
Sbjct: 521 cttcttgacgcactgcgggtggaactc 547
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 181 cttcctgacgcactgcgggtggaactc 207
|||| ||||||||||||||||||||||
Sbjct: 335 cttcttgacgcactgcgggtggaactc 309
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 181 cttcctgacgcactgcgggtggaactc 207
|||| ||||||||||||||||||||||
Sbjct: 358 cttcttgacgcactgcgggtggaactc 332
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 181 cttcctgacgcactgcgggtggaactc 207
|||| ||||||||||||||||||||||
Sbjct: 358 cttcttgacgcactgcgggtggaactc 332
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 181 cttcctgacgcactgcgggtggaactc 207
|||| ||||||||||||||||||||||
Sbjct: 341 cttcttgacgcactgcgggtggaactc 315
>gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47C08
5-PRIME, mRNA sequence
Length = 355
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 180 gcttcctgacgcactgcgggtggaactcgac 210
||||| |||||||| ||||||||||||||||
Sbjct: 144 gcttcgtgacgcacggcgggtggaactcgac 174
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 182 ttcctgacgcactgcgggtggaactcgacg 211
||||||||||||| |||||||||||||||
Sbjct: 196 ttcctgacgcactcagggtggaactcgacg 225
>gb|AJ462599.1|AJ462599 AJ462599 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200036E05F1, mRNA sequence
Length = 360
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 155 tgacgcactgcggctggaactcgacg 180
>gb|BJ450621.1|BJ450621 BJ450621 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30g17 5', mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 149 tgacgcactgcggctggaactcgacg 174
>gb|BJ458043.1|BJ458043 BJ458043 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30g17 3', mRNA sequence
Length = 551
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 425 tgacgcactgcggctggaactcgacg 400
>gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07K10
5-PRIME, mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 182 ttcctgacgcactgcgggtggaactcgacg 211
||||||||||||| |||||||||||||||
Sbjct: 387 ttcctgacgcactcagggtggaactcgacg 416
>gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
5-PRIME, mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 556 tgacgcactgcggctggaactcgacg 581
>gb|CA000677.1|CA000677 HS07F12u HS Hordeum vulgare subsp. vulgare cDNA clone HS07F12
3-PRIME, mRNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 470 tgacgcactgcggctggaactcgacg 445
>gb|CA001229.1|CA001229 HS18N07u HS Hordeum vulgare subsp. vulgare cDNA clone HS18N07
3-PRIME, mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 371 tgacgcactgcggctggaactcgacg 346
>gb|CA001379.1|CA001379 HS18D16u HS Hordeum vulgare subsp. vulgare cDNA clone HS18D16
3-PRIME, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 434 tgacgcactgcggctggaactcgacg 409
>gb|CB859573.1|CB859573 HI10O06w HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
3-PRIME, mRNA sequence
Length = 511
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186 tgacgcactgcgggtggaactcgacg 211
||||||||||||| ||||||||||||
Sbjct: 470 tgacgcactgcggctggaactcgacg 445
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 182 ttcctgacgcactgcgggtggaactcgacg 211
||||||||||||| |||||||||||||||
Sbjct: 390 ttcctgacgcactcagggtggaactcgacg 361
>gb|BE411730.1|BE411730 ISC008.F09F990729 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.F09, mRNA sequence
Length = 346
Score = 42.1 bits (21), Expect = 0.020
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 gacgcactgcgggtggaactcgacg 211
|||||||||||| ||||||||||||
Sbjct: 91 gacgcactgcggctggaactcgacg 115
>gb|BF260368.2|BF260368 HVSMEf0021M24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021M24f, mRNA sequence
Length = 816
Score = 42.1 bits (21), Expect = 0.020
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 gacgcactgcgggtggaactcgacg 211
|||||||||||| ||||||||||||
Sbjct: 134 gacgcactgcggttggaactcgacg 158
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.020
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 179 tgcttcctgacgcactgcgggtggaactc 207
|||||| || |||||||||||||||||||
Sbjct: 300 tgcttcgtgtcgcactgcgggtggaactc 272
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.020
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 179 tgcttcctgacgcactgcgggtggaactc 207
|||||| || |||||||||||||||||||
Sbjct: 313 tgcttcgtgtcgcactgcgggtggaactc 285
>gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P16
5-PRIME, mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.020
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactc 207
|||||| || |||||||||||||||||||
Sbjct: 526 tgcttcgtgtcgcactgcgggtggaactc 554
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.020
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactcgacg 211
||||||||||| ||| ||||||||||||||||
Sbjct: 168 tgcttcctgacccacgccgggtggaactcgacg 200
>gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. vulgare cDNA clone HT08L06
5-PRIME, mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.020
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaactc 207
|||||| || |||||||||||||||||||
Sbjct: 313 tgcttcgtgtcgcactgcgggtggaactc 341
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.078
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 181 cttcctgacgcactgcgggtggaactcg 208
|||||| ||||||| |||||||||||||
Sbjct: 372 cttcctcacgcactccgggtggaactcg 399
>gb|BF621993.2|BF621993 HVSMEa0001H17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001H17f, mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 49 gaggaaggaggtggagaggt 30
>gb|BF624531.2|BF624531 HVSMEa0017A18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017A18f, mRNA sequence
Length = 848
Score = 40.1 bits (20), Expect = 0.078
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 179 tgcttcctgacgcactgcgggtggaact 206
||||| |||| |||||||||||||||||
Sbjct: 518 tgctttctgatgcactgcgggtggaact 545
>gb|BF624759.2|BF624759 HVSMEa0017K18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K18f, mRNA sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 32 gaggaaggaggtggagaggt 13
>gb|BF627261.2|BF627261 HVSMEb0004G05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004G05f, mRNA sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 95 gaggaaggaggtggagaggt 76
>gb|BF629551.2|BF629551 HVSMEb0013E21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013E21f, mRNA sequence
Length = 817
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 27 gaggaaggaggtggagaggt 8
>gb|BG300697.1|BG300697 HVSMEb0018A15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018A15f, mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 26 gaggaaggaggtggagaggt 7
>gb|BI957071.1|BI957071 HVSMEn0007E10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007E10f, mRNA sequence
Length = 1096
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 29 gaggaaggaggtggagaggt 10
>gb|BE455450.3|BE455450 HVSMEg0017D11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017D11f, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 36 gaggaaggaggtggagaggt 17
>gb|BG345062.2|BG345062 HVSMEg0018I04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018I04f, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 31 gaggaaggaggtggagaggt 12
>gb|AV909888.1|AV909888 AV909888 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2f11 5', mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaggaaggaggtggagaggt 356
||||||||||||||||||||
Sbjct: 29 gaggaaggaggtggagaggt 10
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,357
Number of Sequences: 312970
Number of extensions: 71357
Number of successful extensions: 22421
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 101
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22302
Number of HSP's gapped (non-prelim): 119
length of query: 581
length of database: 175,134,539
effective HSP length: 19
effective length of query: 562
effective length of database: 169,188,109
effective search space: 95083717258
effective search space used: 95083717258
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)