BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922138.2.1
(1095 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF258180.2|BF258180 HVSMEf0015A11f Hordeum vulgare seedl... 192 2e-047
gb|AV934980.1|AV934980 AV934980 K. Sato unpublished cDNA li... 190 7e-047
gb|BJ476097.1|BJ476097 BJ476097 K. Sato unpublished cDNA li... 190 7e-047
gb|BU996421.1|BU996421 HM13I21r HM Hordeum vulgare subsp. v... 190 7e-047
gb|BE214410.3|BE214410 HV_CEb0003G01f Hordeum vulgare seedl... 180 6e-044
gb|AV914749.1|AV914749 AV914749 K. Sato unpublished cDNA li... 180 6e-044
gb|AV915236.1|AV915236 AV915236 K. Sato unpublished cDNA li... 180 6e-044
gb|AV933386.1|AV933386 AV933386 K. Sato unpublished cDNA li... 180 6e-044
gb|AV933542.1|AV933542 AV933542 K. Sato unpublished cDNA li... 180 6e-044
gb|AV934062.1|AV934062 AV934062 K. Sato unpublished cDNA li... 180 6e-044
gb|BM816845.1|BM816845 HB105B04_SK.ab1 HB Hordeum vulgare s... 180 6e-044
gb|BQ471903.1|BQ471903 HV03N05r HV Hordeum vulgare subsp. v... 180 6e-044
gb|BQ739853.1|BQ739853 HB04A05 HB Hordeum vulgare subsp. vu... 180 6e-044
gb|BM375339.2|BM375339 EBem06_SQ003_A21_R embryo, 21 DPA, n... 180 6e-044
gb|CA012646.1|CA012646 HT06A10r HT Hordeum vulgare subsp. v... 180 6e-044
gb|BF621527.1|BF621527 HVSMEa0011E23f Hordeum vulgare seedl... 174 4e-042
gb|BF621761.2|BF621761 HVSMEa0012H13f Hordeum vulgare seedl... 174 4e-042
gb|BF260055.2|BF260055 HVSMEf0020P20f Hordeum vulgare seedl... 174 4e-042
gb|AV932136.1|AV932136 AV932136 K. Sato unpublished cDNA li... 174 4e-042
gb|AV932602.1|AV932602 AV932602 K. Sato unpublished cDNA li... 174 4e-042
gb|AV932651.1|AV932651 AV932651 K. Sato unpublished cDNA li... 174 4e-042
gb|BJ472055.1|BJ472055 BJ472055 K. Sato unpublished cDNA li... 174 4e-042
gb|BQ467934.1|BQ467934 HR01G10r HR Hordeum vulgare subsp. v... 174 4e-042
gb|CA020312.1|CA020312 HV14O23r HV Hordeum vulgare subsp. v... 174 4e-042
gb|BG300031.1|BG300031 HVSMEb0011B11f Hordeum vulgare seedl... 167 1e-039
gb|BQ464865.1|BQ464865 HU01O19T HU Hordeum vulgare subsp. v... 157 9e-037
gb|AJ432736.1|AJ432736 AJ432736 S00002 Hordeum vulgare subs... 153 1e-035
gb|BE214395.2|BE214395 HV_CEb0003F06f Hordeum vulgare seedl... 141 6e-032
gb|BG365950.2|BG365950 HVSMEi0005H10f Hordeum vulgare 20 DA... 141 6e-032
gb|BQ662063.1|BQ662063 HR01G10u HR Hordeum vulgare subsp. v... 141 6e-032
gb|CA017090.1|CA017090 HV14O23u HV Hordeum vulgare subsp. v... 141 6e-032
gb|BG367058.2|BG367058 HVSMEi0009P21f Hordeum vulgare 20 DA... 137 9e-031
gb|BG309950.2|BG309950 HVSMEc0015F24f Hordeum vulgare seedl... 133 1e-029
gb|CK122919.1|CK122919 BES1824101e05 BES1824 Hordeum vulgar... 131 5e-029
gb|BF629559.3|BF629559 HVSMEb0013F09f Hordeum vulgare seedl... 129 2e-028
gb|CV059100.1|CV059100 BNEL44d1 Barley EST endosperm librar... 121 5e-026
gb|AV919848.1|AV919848 AV919848 K. Sato unpublished cDNA li... 107 8e-022
gb|AV921854.1|AV921854 AV921854 K. Sato unpublished cDNA li... 107 8e-022
gb|AV935828.1|AV935828 AV935828 K. Sato unpublished cDNA li... 107 8e-022
gb|AV936314.1|AV936314 AV936314 K. Sato unpublished cDNA li... 107 8e-022
gb|BQ663284.1|BQ663284 HU01O19w HU Hordeum vulgare subsp. v... 107 8e-022
gb|BE602191.1|BE602191 HVSMEh0102O23f Hordeum vulgare 5-45 ... 103 1e-020
gb|BF629242.2|BF629242 HVSMEb0010H15f Hordeum vulgare seedl... 103 1e-020
gb|BI955576.1|BI955576 HVSMEm0023K04f Hordeum vulgare green... 103 1e-020
gb|AV935981.1|AV935981 AV935981 K. Sato unpublished cDNA li... 103 1e-020
gb|BJ475625.1|BJ475625 BJ475625 K. Sato unpublished cDNA li... 90 2e-016
gb|BE214264.2|BE214264 HV_CEb0002O24f Hordeum vulgare seedl... 88 7e-016
gb|CV062009.1|CV062009 BNEL75d1 Barley EST endosperm librar... 80 2e-013
gb|CA011285.1|CA011285 HT06A10u HT Hordeum vulgare subsp. v... 74 1e-011
gb|BF254292.2|BF254292 HVSMEf0003J01f Hordeum vulgare seedl... 70 2e-010
gb|BG365954.2|BG365954 HVSMEi0005H20f Hordeum vulgare 20 DA... 68 7e-010
gb|AV912065.1|AV912065 AV912065 K. Sato unpublished cDNA li... 68 7e-010
gb|AV937218.1|AV937218 AV937218 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ471674.1|BJ471674 BJ471674 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ472311.1|BJ472311 BJ472311 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ474280.1|BJ474280 BJ474280 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ476305.1|BJ476305 BJ476305 K. Sato unpublished cDNA li... 68 7e-010
gb|AV909965.1|AV909965 AV909965 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ469364.1|BJ469364 BJ469364 K. Sato unpublished cDNA li... 64 1e-008
gb|BF260543.3|BF260543 HVSMEf0022E15f Hordeum vulgare seedl... 60 2e-007
gb|AV934530.1|AV934530 AV934530 K. Sato unpublished cDNA li... 44 0.010
gb|AV934707.1|AV934707 AV934707 K. Sato unpublished cDNA li... 42 0.038
gb|BJ460652.1|BJ460652 BJ460652 K. Sato unpublished cDNA li... 40 0.15
>gb|BF258180.2|BF258180 HVSMEf0015A11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015A11f, mRNA sequence
Length = 875
Score = 192 bits (97), Expect = 2e-047
Identities = 309/377 (81%), Gaps = 2/377 (0%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||| ||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 145 agggcaaagtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 203
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 204 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 263
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| |||||| |||| |||
Sbjct: 264 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatatcttacat 323
Query: 366 ggggatccttatgcacctgagaatgttgagaagccctttcctgtgtggataaagtcacat 425
|||||||| |||| |||||| || | || | || | | ||||||| ||||| |||
Sbjct: 324 ggggatccatatgtacctgaaaacgccgacagaccaatacatgtgtggttaaaggagcat 383
Query: 426 actccggaaaaagggtttgaagagacaaaacaagttattggggctctaaaggagaaggga 485
| |||| ||||| ||||||||| |||||| ||||||| ||||| || || | |||
Sbjct: 384 gccccgggaaaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaagga 443
Query: 486 gtgtctgctgttggagctgcagggtattgctggggtgcaaaggttgttgtggagttggca 545
|| ||| ||||||| |||||||| |||||||||||||||||||| |||| ||| | ||
Sbjct: 444 gtatctactgttggggctgcaggttattgctggggtgcaaaggtggttgctgagctagcg 503
Query: 546 aaagctcatgagatcca 562
|||||||||||||||||
Sbjct: 504 aaagctcatgagatcca 520
>gb|AV934980.1|AV934980 AV934980 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2g20 3', mRNA sequence
Length = 701
Score = 190 bits (96), Expect = 7e-047
Identities = 303/372 (81%)
Strand = Plus / Minus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 600 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 541
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 540 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 481
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 480 catgcagctgttatgtcacacccttcttttgttactgttgaagatatcaaagaggtgaaa 421
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagctaatcaag 680
||| | || || | || |||||||| |||||||||| |||||||| || | |||||
Sbjct: 420 tgccccatagctgtacttggagctgaaattgacaaaacatccccaccagaattggtcaag 361
Query: 681 cagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatcttccct 740
|||||||||||||| || || | ||||||||| ||| ||||| |||||||| ||||||
Sbjct: 360 cagttcgagcaggttctgtcctctaactcagggattgctcactttgtcaagatattccct 301
Query: 741 ggtgtggcgcatggatggagcgtgagatacaaccacgacgacgcagctgccgtgaagagt 800
|| || | |||||||||| ||||||||||| || ||||||| ||| |||||||||
Sbjct: 300 ggggtttctcatggatggactgtgagatacaaaagtgaagacgcaggtgctgtgaagagt 241
Query: 801 gctgaggaagcc 812
||||||||||||
Sbjct: 240 gctgaggaagcc 229
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 342 gttgtggtaccagatttctttcatggggatccttatgcacctga 385
|||||||| ||||||||||| ||||||||||| |||| ||||||
Sbjct: 699 gttgtggtgccagatttcttacatggggatccatatgtacctga 656
>gb|BJ476097.1|BJ476097 BJ476097 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31o24 3', mRNA sequence
Length = 690
Score = 190 bits (96), Expect = 7e-047
Identities = 303/372 (81%)
Strand = Plus / Minus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 590 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 531
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 530 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 471
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 470 catgcagctgttatgtcacacccttcttttgttactgttgaagatatcaaagaggtgaaa 411
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagctaatcaag 680
||| | || || | || |||||||| |||||||||| |||||||| || | |||||
Sbjct: 410 tgccccatagctgtacttggagctgaaattgacaaaacatccccaccagaattggtcaag 351
Query: 681 cagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatcttccct 740
|||||||||||||| || || | ||||||||| ||| ||||| |||||||| ||||||
Sbjct: 350 cagttcgagcaggttctgtcctctaactcagggattgctcactttgtcaagatattccct 291
Query: 741 ggtgtggcgcatggatggagcgtgagatacaaccacgacgacgcagctgccgtgaagagt 800
|| || | |||||||||| ||||||||||| || ||||||| ||| |||||||||
Sbjct: 290 ggggtttctcatggatggactgtgagatacaaaagtgaagacgcaggtgctgtgaagagt 231
Query: 801 gctgaggaagcc 812
||||||||||||
Sbjct: 230 gctgaggaagcc 219
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 342 gttgtggtaccagatttctttcatggggatccttatgcacctga 385
|||||||| ||||||||||| ||||||||||| |||| ||||||
Sbjct: 689 gttgtggtgccagatttcttacatggggatccatatgtacctga 646
>gb|BU996421.1|BU996421 HM13I21r HM Hordeum vulgare subsp. vulgare cDNA clone HM13I21
5-PRIME, mRNA sequence
Length = 641
Score = 190 bits (96), Expect = 7e-047
Identities = 303/372 (81%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 171 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 230
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 231 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 290
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 291 catgcagctgttatgtcacacccttcttttgttactgttgaagatatcaaagaggtgaaa 350
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagctaatcaag 680
||| | || || | || |||||||| |||||||||| |||||||| || | |||||
Sbjct: 351 tgccccatagctgtacttggagctgaaattgacaaaacatccccaccagaattggtcaag 410
Query: 681 cagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatcttccct 740
|||||||||||||| || || | ||||||||| ||| ||||| |||||||| ||||||
Sbjct: 411 cagttcgagcaggttctgtcctctaactcagggattgctcactttgtcaagatattccct 470
Query: 741 ggtgtggcgcatggatggagcgtgagatacaaccacgacgacgcagctgccgtgaagagt 800
|| || | |||||||||| ||||||||||| || ||||||| ||| |||||||||
Sbjct: 471 ggggtttctcatggatggactgtgagatacaaaagtgaagacgcaggtgctgtgaagagt 530
Query: 801 gctgaggaagcc 812
||||||||||||
Sbjct: 531 gctgaggaagcc 542
>gb|BE214410.3|BE214410 HV_CEb0003G01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003G01f, mRNA sequence
Length = 712
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 106 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 165
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 166 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 225
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 226 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 285
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 286 gggatccatatgtacctga 304
Score = 67.9 bits (34), Expect = 7e-010
Identities = 122/150 (81%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||| | ||||| ||||||||||||
Sbjct: 387 gctctaaaggaacaaggagcgtctagtgttggggctgcaagttattgttggggtgcaaag 446
Query: 528 gttgttgtggagttggc-aaaagctcatgagatccaggctgctgtgctgttgcacccttc 586
|| || | ||||| || ||||||| ||||||||||| | || || ||| ||| |||||
Sbjct: 447 gtagtcgcagagttagcgaaaagctaatgagatccagacagccgttatgtcgcatccttc 506
Query: 587 ttttgttaccgttgacgatatcaaagaggt 616
||||||||| || || ||||| ||||||||
Sbjct: 507 ttttgttactgtcgatgatataaaagaggt 536
>gb|AV914749.1|AV914749 AV914749 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7o08 5', mRNA sequence
Length = 599
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 245 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 304
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 305 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 364
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 365 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 424
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 425 gggatccatatgtacctga 443
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 526 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 585
Query: 528 gt 529
||
Sbjct: 586 gt 587
>gb|AV915236.1|AV915236 AV915236 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13h19 5', mRNA sequence
Length = 607
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 127 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 186
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 187 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 246
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 247 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 306
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 307 gggatccatatgtacctga 325
Score = 81.8 bits (41), Expect = 4e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 408 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 467
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 468 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 527
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| ||||||||
Sbjct: 528 tttgttactgtcgatgatataaaagaggt 556
>gb|AV933386.1|AV933386 AV933386 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6j21 5', mRNA sequence
Length = 599
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 75 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 134
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 135 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 194
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 195 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 254
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 255 gggatccatatgtacctga 273
Score = 81.8 bits (41), Expect = 4e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 356 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 415
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 416 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 475
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| ||||||||
Sbjct: 476 tttgttactgtcgatgatataaaagaggt 504
>gb|AV933542.1|AV933542 AV933542 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7f16 5', mRNA sequence
Length = 590
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 71 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 130
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 131 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 190
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 191 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 250
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 251 gggatccatatgtacctga 269
Score = 81.8 bits (41), Expect = 4e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 352 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 411
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 412 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 471
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| ||||||||
Sbjct: 472 tttgttactgtcgatgatataaaagaggt 500
>gb|AV934062.1|AV934062 AV934062 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baalo04 5', mRNA sequence
Length = 534
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 54 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 113
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 114 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 173
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 174 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 233
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 234 gggatccatatgtacctga 252
Score = 81.8 bits (41), Expect = 4e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 335 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 394
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 395 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 454
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| ||||||||
Sbjct: 455 tttgttactgtcgatgatataaaagaggt 483
>gb|BM816845.1|BM816845 HB105B04_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105B04_SK.ab1 similar to (AF370531) Unknown protein
[Arabidopsis thaliana], mRNA sequence
Length = 887
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 138 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 197
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 198 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 257
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 258 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 317
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 318 gggatccatatgtacctga 336
Score = 95.6 bits (48), Expect = 3e-018
Identities = 236/299 (78%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 419 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 478
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 479 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 538
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 539 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 598
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 599 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 658
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgag 766
|||||| ||| |||| ||||||||||||||||| || | |||||||||| ||||||
Sbjct: 659 tcagggattgctcactntgtcaagatcttccctggggtttctcatggatggaccgtgag 717
>gb|BQ471903.1|BQ471903 HV03N05r HV Hordeum vulgare subsp. vulgare cDNA clone HV03N05
5-PRIME, mRNA sequence
Length = 429
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 122 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 181
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 182 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 241
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 242 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 301
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 302 gggatccatatgtacctga 320
>gb|BQ739853.1|BQ739853 HB04A05 HB Hordeum vulgare subsp. vulgare cDNA clone HB04A05
similar to NP_566732.1| (NM_113263) expressed protein
[Arabidopsis thaliana] gi|9294516|dbj|BAB02778.1|
(AB023036) contains similarity to
endo-1,3-1,4-beta-D-glucanase gene_id:MDB19.8..., mRNA
sequence
Length = 638
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 68 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 127
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 128 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 187
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 188 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 247
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 248 gggatccatatgtacctga 266
Score = 75.8 bits (38), Expect = 3e-012
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 349 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 408
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 409 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 468
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| | ||||||
Sbjct: 469 tttgttactgtcgatgatataanagaggt 497
Score = 48.1 bits (24), Expect = 6e-004
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 676 tcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatct 735
||||| ||||||||||||| || || | |||||| || ||| ||||| ||||||||||
Sbjct: 557 tcaaggagttcgagcaggttctatcatctaactcanggattgctcactttgtcaagatct 616
Query: 736 tccctgg 742
|||||||
Sbjct: 617 tccctgg 623
>gb|BM375339.2|BM375339 EBem06_SQ003_A21_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_A21 5', mRNA sequence
Length = 546
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 119 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 178
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 179 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 238
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 239 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 298
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 299 gggatccatatgtacctga 317
Score = 77.8 bits (39), Expect = 7e-013
Identities = 120/147 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 400 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 459
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 460 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 519
Query: 588 tttgttaccgttgacgatatcaaagag 614
|||||||| || || ||||| ||||||
Sbjct: 520 tttgttactgtcgatgatataaaagag 546
>gb|CA012646.1|CA012646 HT06A10r HT Hordeum vulgare subsp. vulgare cDNA clone HT06A10
5-PRIME, mRNA sequence
Length = 651
Score = 180 bits (91), Expect = 6e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 101 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 160
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 161 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 220
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 221 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 280
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 281 gggatccatatgtacctga 299
Score = 83.8 bits (42), Expect = 1e-014
Identities = 213/270 (78%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 382 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 441
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 442 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 501
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 502 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 561
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 562 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 621
Query: 708 tcaggggttggccacttcgtcaagatcttc 737
|||||| ||| ||||| ||||||||||||
Sbjct: 622 tcagggattgctcactttgtcaagatcttc 651
>gb|BF621527.1|BF621527 HVSMEa0011E23f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011E23f, mRNA sequence
Length = 844
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 134 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 192
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 193 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 252
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 253 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 312
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 313 ggggatccatatgtacctga 332
Score = 159 bits (80), Expect = 2e-037
Identities = 269/332 (81%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 388 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 447
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 448 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 507
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 508 catgcagctgttatgtcacacccttcttttgttactgttgaagatatcaaagaggtgaaa 567
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagctaatcaag 680
||| | || || | || |||||||| |||||||||| |||||||| || | |||||
Sbjct: 568 tgccccatagctgtacttggagctgaaattgacaaaacatccccaccagaattggtcaag 627
Query: 681 cagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatcttccct 740
|||||||||||||| || || | ||||||||| ||| ||||| |||||||| ||||||
Sbjct: 628 cagttcgagcaggttctgtcctctaactcagggattgctcactttgtcaagatattccct 687
Query: 741 ggtgtggcgcatggatggagcgtgagatacaa 772
|| | | |||||||||| |||||||||||
Sbjct: 688 gggggttctcatggatggactgtgagatacaa 719
>gb|BF621761.2|BF621761 HVSMEa0012H13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012H13f, mRNA sequence
Length = 908
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 74 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 132
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 133 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 192
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 193 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 252
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 253 ggggatccatatgtacctga 272
Score = 121 bits (61), Expect = 5e-026
Identities = 178/217 (82%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 328 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 387
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 388 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 447
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| ||
Sbjct: 448 catgcagctgttatgtcacacccttcttttggtactgttgaagatatcaaagaggtgaaa 507
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaa 657
||||| || || | || |||||||| ||||||||||
Sbjct: 508 tgcgccatagctgtacttggagctgaaattgacaaaa 544
>gb|BF260055.2|BF260055 HVSMEf0020P20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020P20f, mRNA sequence
Length = 803
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 183 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 241
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 242 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 301
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 302 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 361
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 362 ggggatccatatgtacctga 381
Score = 117 bits (59), Expect = 8e-025
Identities = 185/227 (81%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 437 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 496
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| ||||||||||||||||| || |||| ||| | || |||||| ||||||||
Sbjct: 497 gctgcaggttattgctggggtgcaaaagtggttgctgagctagcgaaagctaatgagatc 556
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggtcaag 620
|| || ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 557 catgcagctgttatgtcacacccttcttttgttactgttgaagatatcaaagaggtgaaa 616
Query: 621 tgcgcaatttctatcctcggagctgagattgacaaaatgtccccacc 667
||| | || || | || |||||||| |||||||||| ||||||||
Sbjct: 617 tgccccatagctgtacttggagctgaaattgacaaaacatccccacc 663
>gb|AV932136.1|AV932136 AV932136 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2g20 5', mRNA sequence
Length = 622
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 219 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 277
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 278 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 337
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 338 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 397
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 398 ggggatccatatgtacctga 417
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 473 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 532
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 533 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 592
Query: 561 caggctgctgtgctgttgcacccttctttt 590
|| || ||||| ||| ||||||||||||
Sbjct: 593 catgcagctgttatgtcacacccttctttt 622
>gb|AV932602.1|AV932602 AV932602 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1f07 5', mRNA sequence
Length = 516
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 186 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 244
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 245 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 304
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 305 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 364
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 365 ggggatccatatgtacctga 384
>gb|AV932651.1|AV932651 AV932651 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1i11 5', mRNA sequence
Length = 589
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 186 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 244
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 245 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 304
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 305 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 364
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 365 ggggatccatatgtacctga 384
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 440 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 499
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 500 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 559
Query: 561 caggctgctgtgctgttgcacccttctttt 590
|| || ||||| ||| ||||||||||||
Sbjct: 560 catgcagctgttatgtcacacccttctttt 589
>gb|BJ472055.1|BJ472055 BJ472055 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31o24 5', mRNA sequence
Length = 596
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 193 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 251
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 252 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 311
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 312 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 371
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 372 ggggatccatatgtacctga 391
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 447 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 506
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 507 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 566
Query: 561 caggctgctgtgctgttgcacccttctttt 590
|| || ||||| ||| ||||||||||||
Sbjct: 567 catgcagctgttatgtcacacccttctttt 596
>gb|BQ467934.1|BQ467934 HR01G10r HR Hordeum vulgare subsp. vulgare cDNA clone HR01G10
5-PRIME, mRNA sequence
Length = 549
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 141 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 199
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 200 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 259
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 260 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 319
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 320 ggggatccatatgtacctga 339
Score = 93.7 bits (47), Expect = 1e-017
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 395 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 454
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 455 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 514
Query: 561 caggctgctgtgctgttgcacccttcttttgttac 595
|| || ||||| ||| |||||||||||||||||
Sbjct: 515 catgcagctgttatgtcacacccttcttttgttac 549
>gb|CA020312.1|CA020312 HV14O23r HV Hordeum vulgare subsp. vulgare cDNA clone HV14O23
5-PRIME, mRNA sequence
Length = 443
Score = 174 bits (88), Expect = 4e-042
Identities = 174/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 153 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 211
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 212 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 271
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||
Sbjct: 272 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 331
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 332 ggggatccatatgtacctga 351
>gb|BG300031.1|BG300031 HVSMEb0011B11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011B11f, mRNA sequence
Length = 533
Score = 167 bits (84), Expect = 1e-039
Identities = 173/200 (86%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 196 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 254
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| | ||||||||||||| || |||||||||| | |||||
Sbjct: 255 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 314
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| ||||| |||||||| || || || ||||||| ||||||||||| |||
Sbjct: 315 aagatagccgataaagtcgcttcgtctggatatttagttgtggcgccagatttcttacat 374
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 375 ggggatccatatgtacctga 394
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 450 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 509
Query: 501 gctgcagggtattgctggggtgc 523
|||||| | ||||||||||||||
Sbjct: 510 gctgcacgttattgctggggtgc 532
>gb|BQ464865.1|BQ464865 HU01O19T HU Hordeum vulgare subsp. vulgare cDNA clone HU01O19
5-PRIME, mRNA sequence
Length = 613
Score = 157 bits (79), Expect = 9e-037
Identities = 170/199 (85%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 120 agggcaaggtcgtcgacagcttcggcgtt-tcaaggcgtacgtcgccggcgcccaagagt 178
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 179 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 238
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || |||||||| ||||||||||| ||||
Sbjct: 239 agatagccgataaagttgctgcgtctggatatttcgttgtggtgccagatttcttgcatg 298
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 299 gggatccatatgtacctga 317
Score = 81.8 bits (41), Expect = 4e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 400 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 459
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 460 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 519
Query: 588 tttgttaccgttgacgatatcaaagaggt 616
|||||||| || || ||||| ||||||||
Sbjct: 520 tttgttactgtcgatgatataaaagaggt 548
>gb|AJ432736.1|AJ432736 AJ432736 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200022E11F1, mRNA sequence
Length = 301
Score = 153 bits (77), Expect = 1e-035
Identities = 227/277 (81%)
Strand = Plus / Plus
Query: 483 ggagtgtctgctgttggagctgcagggtattgctggggtgcaaaggttgttgtggagttg 542
||||| ||| ||||||| |||||||| |||||||||||||||||||| |||| ||| |
Sbjct: 19 ggagtatctactgttggggctgcaggttattgctggggtgcaaaggtggttgctgagcta 78
Query: 543 gcaaaagctcatgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgac 602
|| |||||| |||||||||| || ||||| ||| ||||||||||||||||| |||||
Sbjct: 79 gcgaaagctaatgagatccatgcagctgttatgtcacacccttcttttgttactgttgaa 138
Query: 603 gatatcaaagaggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtcc 662
|||||||||||||| || ||| | || || | || |||||||| |||||||||| |||
Sbjct: 139 gatatcaaagaggtgaaatgccccatagctgtacttggagctgaaattgacaaaacatcc 198
Query: 663 ccaccggagctaatcaagcagttcgagcaggtcctttctttgaactcaggggttggccac 722
||||| | | ||||||||||||||||||| || || | ||||||||| ||| |||
Sbjct: 199 ccaccacaattggtcaagcagttcgagcaggttctgtcctctaactcagggattgctcac 258
Query: 723 ttcgtcaagatcttccctggtgtggcgcatggatgga 759
|| | |||||| |||||||| ||||| ||||||||||
Sbjct: 259 tttgccaagatattccctggggtggctcatggatgga 295
>gb|BE214395.2|BE214395 HV_CEb0003F06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003F06f, mRNA sequence
Length = 575
Score = 141 bits (71), Expect = 6e-032
Identities = 167/199 (83%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||| ||||||||||||||| ||||| ||||||| ||||| |||||| || | || |
Sbjct: 106 agggcaaagtcgtcgacagcttcagcgggatcaaggcgtacgtggccggcgcccaagagt 165
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
|||| |||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 166 ccaaagccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 225
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || ||||||| ||||||||||| ||||
Sbjct: 226 agatagccgataaagttgctgcgtctggatatttcgttgtggagccagatttcttgcatg 285
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 286 gggatccatatgtacctga 304
>gb|BG365950.2|BG365950 HVSMEi0005H10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0005H10f, mRNA sequence
Length = 952
Score = 141 bits (71), Expect = 6e-032
Identities = 167/199 (83%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||| ||||| ||||||| |||||||||||| || | || |
Sbjct: 112 agggcaaggtcgtcgacagcttccgcgggatcaaggcgtacgtcgccggcgcccaagagt 171
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| | | |||||||| | ||||||
Sbjct: 172 ccaaggccgccgtagttctcatctccgacgtcttcgggtgtggagcgccgaatctgagga 231
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| |||| |||| |||| || || || | ||||| ||||||||||| ||||
Sbjct: 232 agatagccgataaagctgctgcgtctggatatttcggtgtggcgccagatttcttgcatg 291
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 292 gggatccatatgtacctga 310
>gb|BQ662063.1|BQ662063 HR01G10u HR Hordeum vulgare subsp. vulgare cDNA clone HR01G10
3-PRIME, mRNA sequence
Length = 535
Score = 141 bits (71), Expect = 6e-032
Identities = 218/267 (81%)
Strand = Plus / Minus
Query: 546 aaagctcatgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgat 605
|||||| |||||||||| || ||||| ||| ||||||||||||||||| ||||| |||
Sbjct: 529 aaagctaatgagatccatgcagctgttatgtcacacccttcttttgttactgttgaagat 470
Query: 606 atcaaagaggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtcccca 665
||||||||||| || ||| | || || | || |||||||| |||||||||| ||||||
Sbjct: 469 atcaaagaggtgaaatgccccatagctgtacttggagctgaaattgacaaaacatcccca 410
Query: 666 ccggagctaatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttc 725
|| || | ||||||||||||||||||| || || | ||||||||| ||| |||||
Sbjct: 409 ccagaattggtcaagcagttcgagcaggttctgtcctctaactcagggattgctcacttt 350
Query: 726 gtcaagatcttccctggtgtggcgcatggatggagcgtgagatacaaccacgacgacgca 785
|||||||| |||||||| || | |||||||||| ||||||||||| || ||||||
Sbjct: 349 gtcaagatattccctggggtttctcatggatggactgtgagatacaaaagtgaagacgca 290
Query: 786 gctgccgtgaagagtgctgaggaagcc 812
| ||| |||||||||||||||||||||
Sbjct: 289 ggtgctgtgaagagtgctgaggaagcc 263
>gb|CA017090.1|CA017090 HV14O23u HV Hordeum vulgare subsp. vulgare cDNA clone HV14O23
3-PRIME, mRNA sequence
Length = 498
Score = 141 bits (71), Expect = 6e-032
Identities = 218/267 (81%)
Strand = Plus / Minus
Query: 546 aaagctcatgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgat 605
|||||| |||||||||| || ||||| ||| ||||||||||||||||| ||||| |||
Sbjct: 486 aaagctaatgagatccatgcagctgttatgtcacacccttcttttgttactgttgaagat 427
Query: 606 atcaaagaggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtcccca 665
||||||||||| || ||| | || || | || |||||||| |||||||||| ||||||
Sbjct: 426 atcaaagaggtgaaatgccccatagctgtacttggagctgaaattgacaaaacatcccca 367
Query: 666 ccggagctaatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttc 725
|| || | ||||||||||||||||||| || || | ||||||||| ||| |||||
Sbjct: 366 ccagaattggtcaagcagttcgagcaggttctgtcctctaactcagggattgctcacttt 307
Query: 726 gtcaagatcttccctggtgtggcgcatggatggagcgtgagatacaaccacgacgacgca 785
|||||||| |||||||| || | |||||||||| ||||||||||| || ||||||
Sbjct: 306 gtcaagatattccctggggtttctcatggatggactgtgagatacaaaagtgaagacgca 247
Query: 786 gctgccgtgaagagtgctgaggaagcc 812
| ||| |||||||||||||||||||||
Sbjct: 246 ggtgctgtgaagagtgctgaggaagcc 220
>gb|BG367058.2|BG367058 HVSMEi0009P21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009P21f, mRNA sequence
Length = 791
Score = 137 bits (69), Expect = 9e-031
Identities = 126/145 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 75 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 134
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
||||||||||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 135 ccaaggccgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 194
Query: 307 acatagccgacaaagttgcttcgtc 331
| |||||||| ||||||||| ||||
Sbjct: 195 agatagccgataaagttgctgcgtc 219
>gb|BG309950.2|BG309950 HVSMEc0015F24f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015F24f, mRNA sequence
Length = 818
Score = 133 bits (67), Expect = 1e-029
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 83 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 142
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
|||||||||||| || || |||||||||||| || | |||||||| | ||||||
Sbjct: 143 ccaaggccgccggagtgggggtctgcgacgtcttcgggtttggagcgccgaatctgagga 202
Query: 307 acatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatg 366
| |||||||| ||||||||| |||| || || || ||||||| ||||||| ||| ||||
Sbjct: 203 agatagccgataaagttgctgcgtctggatatttcattgtggtgccagattacttgcatg 262
Query: 367 gggatccttatgcacctga 385
||||||| |||| ||||||
Sbjct: 263 gggatccatatgtacctga 281
>gb|CK122919.1|CK122919 BES1824101e05 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E051 5-PRIME, mRNA sequence
Length = 531
Score = 131 bits (66), Expect = 5e-029
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 579 cacccttcttttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctc 638
||||||||||||||||| ||||| |||||||||||||| || ||| | || || | ||
Sbjct: 10 cacccttcttttgttactgttgaagatatcaaagaggtgaaatgccccatagctgtactt 69
Query: 639 ggagctgagattgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctt 698
|||||||| |||||||||| |||||||| || | ||||||||||||||||||| ||
Sbjct: 70 ggagctgaaattgacaaaacatccccaccagaattggtcaagcagttcgagcaggttctg 129
Query: 699 tctttgaactcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatgg 758
|| | ||||||||| ||| ||||| |||||||| |||||||| || | |||||||||
Sbjct: 130 tcctctaactcagggattgctcactttgtcaagatattccctggggtttctcatggatgg 189
Query: 759 agcgtgagatacaaccacgacgacgcagctgccgtgaagagtgctgaggaagcc 812
| ||||||||||| || ||||||| ||| |||||||||||||||||||||
Sbjct: 190 actgtgagatacaaaagtgaagacgcaggtgctgtgaagagtgctgaggaagcc 243
>gb|BF629559.3|BF629559 HVSMEb0013F09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013F09f, mRNA sequence
Length = 815
Score = 129 bits (65), Expect = 2e-028
Identities = 125/145 (86%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggccccgaggact 246
||||||||||||||||||||||||||||| ||||||| |||||||||||| || | || |
Sbjct: 100 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggcgcccaagagt 159
Query: 247 ccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagga 306
|||||| |||||| || ||| | ||||||||||||| || | |||||||| | ||||||
Sbjct: 160 ccaagggcgccgtagttctcatctccgacgtcttcgggtttggagcgccgaatctgagga 219
Query: 307 acatagccgacaaagttgcttcgtc 331
| |||||||| ||||||||| ||||
Sbjct: 220 agatagccgataaagttgctgcgtc 244
>gb|CV059100.1|CV059100 BNEL44d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL44d1 5' similar to Unknown
protein, mRNA sequence
Length = 607
Score = 121 bits (61), Expect = 5e-026
Identities = 122/141 (86%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
||||||||||||||||||||| || ||||||| ||||| || |||||||||| | |||||
Sbjct: 200 tccaaggccgccgtcgtcctcatttccgacgttttcgggtttgaagcgccgaatctgagg 259
Query: 306 aacatagccgacaaagttgcttcgtcagggtactt-tgttgtggtaccagatttctttca 364
|| |||||||| ||||| |||||||| || || || |||||||| ||||||||||| ||
Sbjct: 260 aagatagccgataaagtcgcttcgtctggatatttaagttgtggtgccagatttcttaca 319
Query: 365 tggggatccttatgcacctga 385
||||||||| |||| ||||||
Sbjct: 320 tggggatccatatgtacctga 340
Score = 87.7 bits (44), Expect = 7e-016
Identities = 145/176 (82%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 441 tttgaagagacaaaacaagttattggggctctaaaggagaagggagtgtctgctgttgga 500
||||||||| |||||| ||||||| ||||| || || | ||||| ||| |||||||
Sbjct: 396 tttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggg 455
Query: 501 gctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatgagatc 560
|||||||| |||||||||||||||||||| |||| ||| | || |||||| ||||||||
Sbjct: 456 gctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagctaatgagatc 515
Query: 561 caggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagaggt 616
|| || ||||| ||| |||||||||||||| || | ||| ||||||||||||||
Sbjct: 516 catgcagctgttatgtcacacccttcttttgt-actggtga-gatatcaaagaggt 569
>gb|AV919848.1|AV919848 AV919848 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7o08 3', mRNA sequence
Length = 671
Score = 107 bits (54), Expect = 8e-022
Identities = 240/302 (79%)
Strand = Plus / Minus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 563 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 504
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 503 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 444
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 443 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 384
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 383 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 324
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgaga 767
|||||| ||| ||||| ||||||||||||||||| || | |||||||||| |||||||
Sbjct: 323 tcagggattgctcactttgtcaagatcttccctggggtttctcatggatggaccgtgaga 264
Query: 768 ta 769
||
Sbjct: 263 ta 262
>gb|AV921854.1|AV921854 AV921854 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13h19 3', mRNA sequence
Length = 628
Score = 107 bits (54), Expect = 8e-022
Identities = 240/302 (79%)
Strand = Plus / Minus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 614 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 555
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 554 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 495
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 494 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 435
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 434 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 375
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgaga 767
|||||| ||| ||||| ||||||||||||||||| || | |||||||||| |||||||
Sbjct: 374 tcagggattgctcactttgtcaagatcttccctggggtttctcatggatggaccgtgaga 315
Query: 768 ta 769
||
Sbjct: 314 ta 313
>gb|AV935828.1|AV935828 AV935828 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6j21 3', mRNA sequence
Length = 648
Score = 107 bits (54), Expect = 8e-022
Identities = 240/302 (79%)
Strand = Plus / Minus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 574 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 515
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 514 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 455
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 454 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 395
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 394 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 335
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgaga 767
|||||| ||| ||||| ||||||||||||||||| || | |||||||||| |||||||
Sbjct: 334 tcagggattgctcactttgtcaagatcttccctggggtttctcatggatggaccgtgaga 275
Query: 768 ta 769
||
Sbjct: 274 ta 273
>gb|AV936314.1|AV936314 AV936314 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10o04 3', mRNA sequence
Length = 614
Score = 107 bits (54), Expect = 8e-022
Identities = 240/302 (79%)
Strand = Plus / Minus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 600 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 541
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 540 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 481
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 480 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 421
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 420 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 361
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgaga 767
|||||| ||| ||||| ||||||||||||||||| || | |||||||||| |||||||
Sbjct: 360 tcagggattgctcactttgtcaagatcttccctggggtttctcatggatggaccgtgaga 301
Query: 768 ta 769
||
Sbjct: 300 ta 299
>gb|BQ663284.1|BQ663284 HU01O19w HU Hordeum vulgare subsp. vulgare cDNA clone HU01O19
3-PRIME, mRNA sequence
Length = 627
Score = 107 bits (54), Expect = 8e-022
Identities = 240/302 (79%)
Strand = Plus / Minus
Query: 468 gctctaaaggagaagggagtgtctgctgttggagctgcagggtattgctggggtgcaaag 527
||||||||||| | |||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 618 gctctaaaggaacaaggagcgtctagtgttggggctgcaggttattgttggggtgcaaag 559
Query: 528 gttgttgtggagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttct 587
|| || | ||||| || |||||| ||||||||||| | || || ||| ||| ||||||
Sbjct: 558 gtagtcgcagagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttct 499
Query: 588 tttgttaccgttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgag 647
|||||||| || || ||||| |||||||| || ||| | || || | || ||||||||
Sbjct: 498 tttgttactgtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaa 439
Query: 648 attgacaaaatgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaac 707
| ||| ||||||||||| || | ||||| ||||||||||||| || || | |||
Sbjct: 438 actgatgtgatgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaac 379
Query: 708 tcaggggttggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgaga 767
|||||| ||| ||||| ||||||||||||||||| || | |||||||||| |||||||
Sbjct: 378 tcagggattgctcactttgtcaagatcttccctggggtttctcatggatggaccgtgaga 319
Query: 768 ta 769
||
Sbjct: 318 ta 317
>gb|BE602191.1|BE602191 HVSMEh0102O23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102O23f, mRNA sequence
Length = 733
Score = 103 bits (52), Expect = 1e-020
Identities = 220/276 (79%)
Strand = Plus / Minus
Query: 494 tgttggagctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctca 553
|||||| |||||||| ||||| |||||||||||||| || | ||||| || |||||| |
Sbjct: 675 tgttggggctgcaggttattgttggggtgcaaaggtagtcgcagagttagcgaaagctaa 616
Query: 554 tgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaaga 613
|||||||||| | || || ||| ||| |||||||||||||| || || ||||| |||||
Sbjct: 615 tgagatccagacagccgttatgtcgcatccttcttttgttactgtcgatgatataaaaga 556
Query: 614 ggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagct 673
||| || ||| | || || | || |||||||| | ||| ||||||||||| || |
Sbjct: 555 ggtgaaatgccccatcgctgtacttggagctgaaactgatgtgatgtccccaccagaatt 496
Query: 674 aatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagat 733
||||| ||||||||||||| || || | ||||||||| ||| ||||| ||||||||
Sbjct: 495 ggtcaaggagttcgagcaggttctatcatctaactcagggattgctcactttgtcaagat 436
Query: 734 cttccctggtgtggcgcatggatggagcgtgagata 769
||||||||| || | |||||||||| |||||||||
Sbjct: 435 cttccctggggtttctcatggatggaccgtgagata 400
>gb|BF629242.2|BF629242 HVSMEb0010H15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010H15f, mRNA sequence
Length = 518
Score = 103 bits (52), Expect = 1e-020
Identities = 99/112 (88%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| ||
Sbjct: 148 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 206
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccga 297
||||||||||||||||||||| | ||||||||||||| || ||||||||||
Sbjct: 207 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccga 258
Score = 73.8 bits (37), Expect = 1e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 309 atagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcatggg 368
|||||||| ||||| |||||||| || || || |||||||| ||||||||||| ||||||
Sbjct: 392 atagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacatggg 451
Query: 369 gatccttatgcacctga 385
||||| |||| ||||||
Sbjct: 452 gatccatatgtacctga 468
>gb|BI955576.1|BI955576 HVSMEm0023K04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023K04f, mRNA sequence
Length = 687
Score = 103 bits (52), Expect = 1e-020
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 271 ccgacgtcttcggattcgaagcgccgattatgaggaacatagccgacaaagttgcttcgt 330
||||||||||||| || | |||||||| | ||||||| |||||||| ||||||||| |||
Sbjct: 192 ccgacgtcttcgggtttggagcgccgaatctgaggaagatagccgataaagttgctgcgt 251
Query: 331 cagggtactttgttgtggtaccagatttctttcatggggatccttatgcacctgag 386
| || || || |||||||| ||||||||||| ||||||||||| |||| |||||||
Sbjct: 252 ctggatatttcgttgtggtgccagatttcttgcatggggatccatatgtacctgag 307
Score = 83.8 bits (42), Expect = 1e-014
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc 236
||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 107 agggcaaggtcgtcgacagcttcggcgggatcaaggcgtacgtcgccggc 156
>gb|AV935981.1|AV935981 AV935981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7f16 3', mRNA sequence
Length = 572
Score = 103 bits (52), Expect = 1e-020
Identities = 220/276 (79%)
Strand = Plus / Minus
Query: 494 tgttggagctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctca 553
|||||| |||||||| ||||| |||||||||||||| || | ||||| || |||||| |
Sbjct: 548 tgttggggctgcaggttattgttggggtgcaaaggtagtcgcagagttagcgaaagctaa 489
Query: 554 tgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaaga 613
|||||||||| | || || ||| ||| |||||||||||||| || || ||||| |||||
Sbjct: 488 tgagatccagacagccgttatgtcgcatccttcttttgttactgtcgatgatataaaaga 429
Query: 614 ggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagct 673
||| || ||| | || || | || |||||||| | ||| ||||||||||| || |
Sbjct: 428 ggtgaaatgccccatcgctgtacttggagctgaaactgatgtgatgtccccaccagaatt 369
Query: 674 aatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagat 733
||||| ||||||||||||| || || | ||||||||| ||| ||||| ||||||||
Sbjct: 368 ggtcaaggagttcgagcaggttctatcatctaactcagggattgctcactttgtcaagat 309
Query: 734 cttccctggtgtggcgcatggatggagcgtgagata 769
||||||||| || | |||||||||| |||||||||
Sbjct: 308 cttccctggggtttctcatggatggaccgtgagata 273
>gb|BJ475625.1|BJ475625 BJ475625 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26n14 3', mRNA sequence
Length = 545
Score = 89.7 bits (45), Expect = 2e-016
Identities = 220/277 (79%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 494 tgttggagctgcagggtattgctgggg-tgcaaaggttgttgtggagttggcaaaagctc 552
|||||| |||||||| ||||| ||||| ||||||||| || | ||||| || ||||||
Sbjct: 541 tgttggggctgcaggttattgttgggggtgcaaaggtagtcgcagagttagcgaaagcta 482
Query: 553 atgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaag 612
||||||||||| | || || ||| ||| |||||||||||||| || || ||||| ||||
Sbjct: 481 atgagatccagacagccgttatgtcgcatccttcttttgttactgtcgatgatataaaag 422
Query: 613 aggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagc 672
|||| || ||| | || || | || |||||||| | ||| ||||||||||| ||
Sbjct: 421 aggtgaaatgccccatcgctgtacttggagctgaaactgatgtgatgtccccaccagaat 362
Query: 673 taatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaaga 732
| ||||| ||||||||||||| || || | ||||||||| ||| ||||| |||||||
Sbjct: 361 tggtcaaggagttcgagcaggttctatcatctaactcagggattgctcactttgtcaaga 302
Query: 733 tcttccctggtgtggcgcatggatggagcgtgagata 769
|||||||||| || | |||||||||| |||||||||
Sbjct: 301 tcttccctggggtttctcatggatggaccgtgagata 265
>gb|BE214264.2|BE214264 HV_CEb0002O24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0002O24f, mRNA sequence
Length = 982
Score = 87.7 bits (44), Expect = 7e-016
Identities = 97/112 (86%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||| ||||| ||||||||||||||| ||| || |||||| ||||| ||||| ||
Sbjct: 359 agggcaatgtcgtagacagcttcggcgggatcacagcgtacgtctccggcgcccga-gag 417
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccga 297
||||||||||||||||||||| | ||||||||||||| || ||||||||||
Sbjct: 418 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccga 469
>gb|CV062009.1|CV062009 BNEL75d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL75d1 5' similar to dienelactone
hydrolase family protein, mRNA sequence
Length = 964
Score = 79.8 bits (40), Expect = 2e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattatgagg 305
|||||||||||||||||||| | ||||||| ||||| || |||||||||| | |||||
Sbjct: 200 tccaaggccgccgtcgtcctaatctccgacgttttcgggttggaagcgccgaatctgagg 259
Query: 306 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 365
|| |||||||| |||| ||| |||| || || | || ||||| ||||||| ||| |||
Sbjct: 260 aagatagccgataaagccgctccgtctggatattaagtggtggtgccagattccttacat 319
Query: 366 ggggatccttatgcacctga 385
|||||||| |||| ||||||
Sbjct: 320 ggggatccatatgtacctga 339
>gb|CA011285.1|CA011285 HT06A10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06A10
3-PRIME, mRNA sequence
Length = 568
Score = 73.8 bits (37), Expect = 1e-011
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 537 gagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttcttttgttacc 596
||||| || |||||| ||||||||||| | || || ||| ||| ||||||||||||||
Sbjct: 558 gagttagcgaaagctaatgagatccagacagccgttatgtcgcatccttcttttgttact 499
Query: 597 gttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgagattgacaaa 656
|| || ||||| |||||||| || ||| | || || | || |||||||| | |||
Sbjct: 498 gtcgatgatataaaagaggtgaaatgccccatcgctgtacttggagctgaaactgatgtg 439
Query: 657 atgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaactcaggggtt 716
||||||||||| || | ||||| ||||||||||||| || || | ||||||||| ||
Sbjct: 438 atgtccccaccagaattggtcaaggagttcgagcaggttctatcatctaactcagggatt 379
Query: 717 ggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgagata 769
| ||||| ||||||||||||||||| || | |||||||||| |||||||||
Sbjct: 378 gctcactttgtcaagatcttccctggggtttctcatggatggaccgtgagata 326
>gb|BF254292.2|BF254292 HVSMEf0003J01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003J01f, mRNA sequence
Length = 883
Score = 69.9 bits (35), Expect = 2e-010
Identities = 91/107 (85%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 187 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 245
||||||||||||| ||||||||||||||| ||| ||| | || ||||| |||||| |
Sbjct: 181 agggcaaggtcgtggacagcttcggcgggatcacggcgtgcggttccggcgcccgag-ag 239
Query: 246 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagc 292
||||||||||||||||||||| | ||||||||||||| || |||||
Sbjct: 240 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagc 286
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,738
Number of Sequences: 312970
Number of extensions: 126738
Number of successful extensions: 39693
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39557
Number of HSP's gapped (non-prelim): 117
length of query: 1095
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1076
effective length of database: 169,188,109
effective search space: 182046405284
effective search space used: 182046405284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)