BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI959898.1|BI959898 HVSMEn0022E20f Hordeum vulgare rachi... 414 e-114
gb|BF625700.2|BF625700 HVSMEa0013F01f Hordeum vulgare seedl... 280 2e-073
gb|CB881254.1|CB881254 HM09D24w HM Hordeum vulgare subsp. v... 204 1e-050
gb|BU995114.1|BU995114 HM09D24r HM Hordeum vulgare subsp. v... 188 7e-046
gb|BQ763144.1|BQ763144 EBro02_SQ007_I08_R root, 3 week, hyd... 107 2e-021
gb|BG309865.1|BG309865 HVSMEc0013G23f Hordeum vulgare seedl... 94 3e-017
gb|CA025597.1|CA025597 HZ52J19r HZ Hordeum vulgare subsp. v... 92 1e-016
gb|BM370963.2|BM370963 EBro04_SQ003_B01_R root, 3 week, sal... 70 4e-010
gb|BI779034.2|BI779034 EBro01_SQ002_K16_R root, 3 week, hyd... 64 3e-008
gb|BE438069.1|BE438069 SFR010.E06F990519 ITEC SFR Barley Le... 58 2e-006
gb|CD663430.1|CD663430 UCRHV18_05bh04_b1 Drought-stressed D... 58 2e-006
gb|BF260669.2|BF260669 HVSMEf0022K01f Hordeum vulgare seedl... 56 6e-006
gb|AV910535.1|AV910535 AV910535 K. Sato unpublished cDNA li... 50 4e-004
gb|CA032497.1|CA032497 HX13D22r HX Hordeum vulgare subsp. v... 50 4e-004
gb|CK123279.1|CK123279 BES1824103c15 BES1824 Hordeum vulgar... 50 4e-004
gb|BF621513.3|BF621513 HVSMEa0011D21f Hordeum vulgare seedl... 42 0.097
gb|BF260965.2|BF260965 HVSMEf0023G13f Hordeum vulgare seedl... 42 0.097
gb|BQ463260.1|BQ463260 HI04J01r HI Hordeum vulgare subsp. v... 42 0.097
gb|BU998735.1|BU998735 HI12A05r HI Hordeum vulgare subsp. v... 42 0.097
gb|CA003517.1|CA003517 HS14L18r HS Hordeum vulgare subsp. v... 42 0.097
gb|CA003563.1|CA003563 HS14N23r HS Hordeum vulgare subsp. v... 42 0.097
gb|CA003661.1|CA003661 HS15C23r HS Hordeum vulgare subsp. v... 42 0.097
gb|CA029558.1|CA029558 HZ65J01r HZ Hordeum vulgare subsp. v... 42 0.097
gb|BE214668.1|BE214668 HV_CEb0004C12f Hordeum vulgare seedl... 40 0.38
>gb|BI959898.1|BI959898 HVSMEn0022E20f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022E20f,
mRNA sequence
Length = 663
Score = 414 bits (209), Expect = e-114
Identities = 478/568 (84%)
Strand = Plus / Minus
Query: 719 cccctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtcca 778
|||||||||| ||||||||||| | ||||||||||| | || |||||||| | ||| |
Sbjct: 635 cccctccaaagatccttgccatccggaaatctgatatttgcgggttcatgtctgtgtcta 576
Query: 779 ggagaatgttgctggccttgagatcacggtgaacaactcgcagcctcgaatcccggtgga 838
|||||||||||||||||||||||||||| ||||||| || ||||| || ||||||||||
Sbjct: 575 ggagaatgttgctggccttgagatcacgatgaacaatacgtagccttgagtcccggtgga 516
Query: 839 gatatagcagccctctagcaatgccttcgattatatcaaaccgtttcttccagtctagaa 898
|||| |||||||||| |||||| ||||| || ||||| |||||| || |||||| ||| |
Sbjct: 515 gatacagcagccctcgagcaataccttcaatgatatcgaaccgtgtcctccagtntagga 456
Query: 899 gccgttgcttttcaggattaaagaggaatgcatctagacttttgttaggcatgtactcat 958
| | | |||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct: 455 gacctcgcttttcaggattaaagataaatgcgtcgaggctcttgttaggcatgtactcat 396
Query: 959 acaccaggatcttctcttccctcggtatgcagcaccctagtagtcttacaagattgcggt 1018
| |||| |||||| ||||| | | | | ||||| ||| |||||| |||||||| ||||
Sbjct: 395 aaaccaagatcttttcttctccctgcttacagcaagctaatagtctgacaagattccggt 336
Query: 1019 gctgcaactttgcaataagtatgacctcattcttgaattcttcaaggccttgacctgaat 1078
|||||||||| ||||| |||||||||||||||||||| || ||| ||||||||||||| |
Sbjct: 335 gctgcaacttcgcaatcagtatgacctcattcttgaactcctcatggccttgacctgagt 276
Query: 1079 tcctacaaagcctcttcacagctacttcttctcccccaggtaaagttcccatatagacag 1138
|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct: 275 tcttacaaagcctcttcacagctacttcttctccaccaggtaatgttcccatataaaccg 216
Query: 1139 gaccaaatcctccttctccaagcttgttagagtcactaaaattacttgtagcagttctta 1198
| |||||||| ||||| ||||||||||| || || || ||| ||| ||||||| | | |
Sbjct: 215 ggccaaatccaccttccccaagcttgttggattccctgaaactaccggtagcagctttaa 156
Query: 1199 tacggtccagcgagtacactttgagttcatgactttttccatcctccacatcatcatcaa 1258
| |||||||| ||| ||||||||||||||||||||||| |||||| ||||| || |
Sbjct: 155 tgcggtccagggagagtactttgagttcatgactttttccgtcctccgattcatcgtcga 96
Query: 1259 aacgaattgactgcgagatgtccagcat 1286
|| |||| || || ||||| ||||||||
Sbjct: 95 aaggaatcgaatgtgagatatccagcat 68
>gb|BF625700.2|BF625700 HVSMEa0013F01f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013F01f, mRNA sequence
Length = 484
Score = 280 bits (141), Expect = 2e-073
Identities = 396/481 (82%)
Strand = Plus / Minus
Query: 308 ctcgaagcatcagcgtaggcggcctcggattaggaaggctcgagctgtcgttgctcagca 367
|||| |||||||| || |||| |||||| | |||||||| |||||||| |||||| ||
Sbjct: 484 ctcggagcatcagggtgggcgccctcggcatgggaaggctggagctgtcactgctcaaca 425
Query: 368 taaggatgacagtggggatgtcaggtcgctcatctgcgtgatcttgcacgcacagcaacg 427
| |||||||| | ||||| ||| || ||||| | || |||||||||||||| | ||| |
Sbjct: 424 tcaggatgaccgcggggacgtccggacgctcttgggcatgatcttgcacgcataacaatg 365
Query: 428 caatatggatgcatctcagcacctgccgaactgagcacgatgctcttatcactggatcga 487
|||| |||||||| |||| || || |||| ||||| |||| | |||||| || ||||
Sbjct: 364 caatgtggatgcacctcaagacttgtcgaatcgagcatgatggttttatcaacgggtcga 305
Query: 488 tcagctccgcagcattgtcttcgttccattgccgccacgcatatccagcgatgttcaagg 547
||| ||| | | |||||||| |||||||| |||| |||||||| |||||||| | ||
Sbjct: 304 tcatttcctcgcccttgtcttcattccattgttgccatgcatatcccgcgatgtttaggg 245
Query: 548 agtcctcgtgacagtggaagctcacagccctctttcctgtgatgatctccaagatcagga 607
|||||| || | || ||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 244 agtcctgctggccatgaaagctgacagccctcttccctgtgatgatctccaagatcagaa 185
Query: 608 ctccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcaggag 667
|||| |||| |||||| || |||||||| || |||||||||||||| || || |||||||
Sbjct: 184 ctccaaagctatagacatccgacttgacggagaaaatgccttccatggcatactcaggag 125
Query: 668 acatgtagccaaatgtaccgacgacccgattcgtgttgaattggttttggtcccctccaa 727
|||||||||| ||||| || ||||| || || |||||||| ||||||| ||||||||||
Sbjct: 124 acatgtagccgaatgttccaacgacacggtttgtgttgaactggttttcatcccctccaa 65
Query: 728 acatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgt 787
| |||||||||||||| ||||||||||| ||||| |||||||| | ||| ||||||||||
Sbjct: 64 agatccttgccattccgaaatctgatattttggggttcatgtctgtgtctaggagaatgt 5
Query: 788 t 788
|
Sbjct: 4 t 4
>gb|CB881254.1|CB881254 HM09D24w HM Hordeum vulgare subsp. vulgare cDNA clone HM09D24
3-PRIME, mRNA sequence
Length = 598
Score = 204 bits (103), Expect = 1e-050
Identities = 337/415 (81%)
Strand = Plus / Plus
Query: 221 atcttccatgcaactgtgtcattgtcacagtgccaatggagtggctccggtccttctcgc 280
|||||||||||| ||||||||||| ||| || |||||||||||||||| || |||||||
Sbjct: 176 atcttccatgcagctgtgtcattgacacggtaccaatggagtggctcctctcgttctcgc 235
Query: 281 ttgacttgctggattcgatctcacggcctcgaagcatcagcgtaggcggcctcggattag 340
|||| ||||| | |||| |||||||||| |||||||| || |||| |||||| | |
Sbjct: 236 ttgatttgctcaactcgagagcacggcctcggagcatcagggtgggcgccctcggcatgg 295
Query: 341 gaaggctcgagctgtcgttgctcagcataaggatgacagtggggatgtcaggtcgctcat 400
||||||| |||||||| |||||| ||| |||||||| | ||||| ||| || ||||| |
Sbjct: 296 gaaggctggagctgtcactgctcaacatcaggatgaccgcggggacgtccggacgctctt 355
Query: 401 ctgcgtgatcttgcacgcacagcaacgcaatatggatgcatctcagcacctgccgaactg 460
|| |||||||||||||| | ||| ||||| |||||||| |||| || || |||| |
Sbjct: 356 gggcatgatcttgcacgcataacaatgcaatgtggatgcacctcaagacttgtcgaatcg 415
Query: 461 agcacgatgctcttatcactggatcgatcagctccgcagcattgtcttcgttccattgcc 520
|||| |||| | |||||| || ||||||| ||| | | |||||||| ||||||||
Sbjct: 416 agcatgatggttttatcaacgggtcgatcatttcctcgcccttgtcttcattccattgtt 475
Query: 521 gccacgcatatccagcgatgttcaaggagtcctcgtgacagtggaagctcacagccctct 580
|||| |||||||| |||||||| | |||||||| || | || ||||| ||||||||||
Sbjct: 476 gccatgcatatcccgcgatgtttagggagtcctgctggccatgaaagctgacagccctct 535
Query: 581 ttcctgtgatgatctccaagatcaggactccgaagccatagacgtcagacttgac 635
| ||||||||||||||||||||||| ||||| |||| |||||| || ||||||||
Sbjct: 536 tccctgtgatgatctccaagatcagaactccaaagctatagacatccgacttgac 590
>gb|BU995114.1|BU995114 HM09D24r HM Hordeum vulgare subsp. vulgare cDNA clone HM09D24
5-PRIME, mRNA sequence
Length = 601
Score = 188 bits (95), Expect = 7e-046
Identities = 336/415 (80%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 221 atcttccatgcaactgtgtcattgtcacagtgccaatggagtggctccggtccttctcgc 280
|||||||||||| ||||||||||| ||| || |||||||||||||||| || |||||||
Sbjct: 425 atcttccatgcagctgtgtcattgacacggtaccaatggagtggctcctctcgttctcgc 366
Query: 281 ttgacttgctggattcgatctcacggcctcgaagcatcagcgtaggcggcctcggattag 340
|||| ||||| | |||| |||||||||| |||||||| || |||| |||||| | |
Sbjct: 365 ttgatttgctcaactcgagagcacggcctcggagcatcagggtgggcgccctcggcatgg 306
Query: 341 gaaggctcgagctgtcgttgctcagcataaggatgacagtggggatgtcaggtcgctcat 400
||||||| |||||||| |||||| ||| |||||||| | ||||| ||| || ||||| |
Sbjct: 305 gaaggctggagctgtcactgctcaacatcaggatgaccgcggggacgtccggacgctctt 246
Query: 401 ctgcgtgatcttgcacgcacagcaacgcaatatggatgcatctcagcacctgccgaactg 460
|| |||||||||||||| | ||| ||||| |||||||| |||| || || |||| |
Sbjct: 245 gggcatgatcttgcacgcataacaatgcaatgtggatgcacctcaagacttgtcgaatcg 186
Query: 461 agcacgatgctcttatcactggatcgatcagctccgcagcattgtcttcgttccattgcc 520
|||| |||| | |||||| || ||||||| ||| | | |||||||| ||||||||
Sbjct: 185 agcatgatggttttatcaacgggtcgatcatttcctcgcccttgtcttcattccattgtt 126
Query: 521 gccacgcatatccagcgatgttcaaggagtcctcgtgacagtggaagctcacagccctct 580
|||| |||||||| |||||||| | |||||||| || | || ||||| ||||||||||
Sbjct: 125 gccatgcatatcccgcgatgtttagggagtcctgctggccatgaaagctgacagccctct 66
Query: 581 ttcctgtgatgatctccaagatcaggactccgaagccatagacgtcagacttgac 635
| ||||| ||||||||||||||||| ||||| |||| |||||| || ||||||||
Sbjct: 65 tccctgt-atgatctccaagatcagaactccaaagctatagacatccgacttgac 12
>gb|BQ763144.1|BQ763144 EBro02_SQ007_I08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_I08 5', mRNA sequence
Length = 634
Score = 107 bits (54), Expect = 2e-021
Identities = 213/266 (80%)
Strand = Plus / Minus
Query: 586 gtgatgatctccaagatcaggactccgaagccatagacgtcagacttgactgaaaaaatg 645
||||||||||||| |||||||| ||||||| || ||||| ||| | || || || | |
Sbjct: 372 gtgatgatctccaggatcaggatgccgaagctgtacacgtcggacctcaccgagaacagg 313
Query: 646 ccttccattgcgtattcaggagacatgtagccaaatgtaccgacgacccgattcgtgttg 705
|| ||||| ||||| || || ||||||||||| | ||| |||||||| || || |||||
Sbjct: 312 ccctccatcgcgtactccggcgacatgtagcctagtgtgccgacgacgcggttggtgttc 253
Query: 706 aattggttttggtcccctccaaacatccttgccattccaaaatctgatatcttgggtttc 765
||||| | ||| || || || ||||| ||||| || || || ||||||||||| |||
Sbjct: 252 tcctggttcttgtcgccgccgaagatcctggccatgccgaagtcggatatcttggggttc 193
Query: 766 atgtccgcgtccaggagaatgttgctggccttgagatcacggtgaacaactcgcagcctc 825
||||| ||||||||| ||||||||||||||||| || ||||| || || || ||||||
Sbjct: 192 atgtcattgtccaggaggatgttgctggccttgaggtcccggtgcaccacgcggagcctc 133
Query: 826 gaatcccggtggagatatagcagccc 851
|| ||||||||||| || ||||||||
Sbjct: 132 gagtcccggtggaggtacagcagccc 107
>gb|BG309865.1|BG309865 HVSMEc0013G23f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0013G23f, mRNA sequence
Length = 825
Score = 93.7 bits (47), Expect = 3e-017
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 2595 ggggtccggcgcgaagaagcccgcctcgaacaccccctccggcgaggacaccagcgtcgc 2654
||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 275 ggggtccggcgcgtggaagcccagctcgaacacccccaacggcgaggacaccagcgtcgc 216
Query: 2655 cgccccggacagcgactccccctgccgcagcgtgtccgt 2693
|| | | | |||||| ||||||||| ||||||||||||
Sbjct: 215 cggcgccgtcagcgagtccccctgcttcagcgtgtccgt 177
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 2177 ccggcgaagggtccgtctcgctggcccaggacgtgaacagcatccgctc 2225
||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 699 ccggcgaggggtccgtctcgcttgcccaggacgtgaagagcatccgctc 651
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 2255 tgatgcgcatcccggacaggatggtgtccgtcgggtgccagaagctgtcccagag 2309
|||||||||||| ||| || |||||||| | ||||||||||||||||||||||||
Sbjct: 609 tgatgcgcatccgggagagcatggtgtcggacgggtgccagaagctgtcccagag 555
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 2445 gccgtcgaggacgcggaggtcgccggtgacggtgagcgtgagcgacggcgaggccgaggt 2504
|||||||||||||||||| |||||| | | |||||||||||||| |||| ||||| ||
Sbjct: 425 gccgtcgaggacgcggagctcgccgccggccgtgagcgtgagcgagggcgcggccgcggc 366
Query: 2505 ggccggcgcgacgcggttggcgacccagacgacggtcc 2542
||||| | |||||||||||||||| |||||||||
Sbjct: 365 ggccgcgttggcgcggttggcgacccacgcgacggtcc 328
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2386 cgcgaggtggtgttggaggaccagagca 2413
|||| |||||||||||||||||||||||
Sbjct: 475 cgcgtggtggtgttggaggaccagagca 448
>gb|CA025597.1|CA025597 HZ52J19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52J19
5-PRIME, mRNA sequence
Length = 447
Score = 91.7 bits (46), Expect = 1e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 730 atccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttg 789
||||| ||||| || || || ||||||||||| |||||||| ||||||||| ||||||
Sbjct: 372 atcctggccatgccgaagtcggatatcttggggttcatgtcattgtccaggaggatgttg 313
Query: 790 ctggccttgagatcacggtgaacaactcgcagcctcgaatcccggtggagatatagcagc 849
||||||||||| || ||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 312 ctggccttgaggtcccggtgcaccacgcggagcctcgagtcccggtggaggtacagcagc 253
Query: 850 cc 851
||
Sbjct: 252 cc 251
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctc 974
|||||||| || || || || ||||| ||||||||||| |||||||| ||||||||
Sbjct: 183 aagaggaaggcgtcgaggctcttgttgggcatgtactcgtacaccagcatcttctc 128
>gb|BM370963.2|BM370963 EBro04_SQ003_B01_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_B01 5', mRNA sequence
Length = 304
Score = 69.9 bits (35), Expect = 4e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 2623 aacaccccctccggcgaggacaccagcgtcgccgccccggacagcgactccccctgccgc 2682
||||||||| ||||||||||||||||||||||| | | | |||||| ||||||||| |
Sbjct: 304 aacacccccaacggcgaggacaccagcgtcgccggcgccgtcagcgagtccccctgcttc 245
Query: 2683 agcgtgtccgt 2693
|||||||||||
Sbjct: 244 agcgtgtccgt 234
>gb|BI779034.2|BI779034 EBro01_SQ002_K16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_K16 5', mRNA sequence
Length = 434
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 934 agacttttgttaggcatgtactcatacaccaggatcttctcttc 977
||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 257 agactgttgttaggcatgtattcatacaccagcatcttctcttc 214
>gb|BE438069.1|BE438069 SFR010.E06F990519 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SFR010.E06, mRNA
sequence
Length = 398
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| || |||||||| |||||||| || || ||||| ||||||||||||||| ||
Sbjct: 184 ccaaagattcttgccatgccaaaatccgaaattttgggagtcatgtccgcgtccaacagg 125
Query: 784 atgttgctggccttgagatcacggtgaac 812
|||||||| || |||||||| | ||||||
Sbjct: 124 atgttgcttgctttgagatctctgtgaac 96
>gb|CD663430.1|CD663430 UCRHV18_05bh04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05bh04, mRNA sequence
Length = 840
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| || |||||||| |||||||| || || ||||| ||||||||||||||| ||
Sbjct: 157 ccaaagattcttgccatgccaaaatccgaaattttgggagtcatgtccgcgtccaacagg 216
Query: 784 atgttgctggccttgagatcacggtgaac 812
|||||||| || |||||||| | ||||||
Sbjct: 217 atgttgcttgctttgagatctctgtgaac 245
>gb|BF260669.2|BF260669 HVSMEf0022K01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022K01f, mRNA sequence
Length = 539
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| |||||||| | ||| || || ||||||||||||||||| ||||||||
Sbjct: 335 atcttggggttcatgtcggggtctagcaggatgttgctggccttgaggtcacggtg 280
>gb|AV910535.1|AV910535 AV910535 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4n16 5', mRNA sequence
Length = 514
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacg 806
|||||||| |||||||| ||||| || || | ||||||||| |||||||||||
Sbjct: 350 atcttggggttcatgtcggcgtcaagaaggacgttgctggctttgagatcacg 298
>gb|CA032497.1|CA032497 HX13D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX13D22
5-PRIME, mRNA sequence
Length = 495
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 765 catgtccgcgtccaggagaatgttgctgg 793
|||||||||||||||||| ||||||||||
Sbjct: 318 catgtccgcgtccaggaggatgttgctgg 290
>gb|CK123279.1|CK123279 BES1824103c15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C153 5-PRIME, mRNA sequence
Length = 697
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacg 806
||||| || |||||||||||||| || || | ||||||||| |||||||||||
Sbjct: 300 atcttcgggttcatgtccgcgtcaagaaggacgttgctggctttgagatcacg 248
>gb|BF621513.3|BF621513 HVSMEa0011D21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011D21f, mRNA sequence
Length = 816
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 186 ttcatgtcggcgtccagcagcacgttgctggccttga 150
>gb|BF260965.2|BF260965 HVSMEf0023G13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023G13f, mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.097
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 943 ttaggcatgtactcatacaccagga 967
|||||||| ||||||||||||||||
Sbjct: 375 ttaggcatatactcatacaccagga 351
>gb|BQ463260.1|BQ463260 HI04J01r HI Hordeum vulgare subsp. vulgare cDNA clone HI04J01
5-PRIME, mRNA sequence
Length = 411
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 232 ttcatgtcggcgtccagcagcacgttgctggccttga 196
>gb|BU998735.1|BU998735 HI12A05r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A05
5-PRIME, mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 509 ttcatgtcggcgtccagcagcacgttgctggccttga 473
>gb|CA003517.1|CA003517 HS14L18r HS Hordeum vulgare subsp. vulgare cDNA clone HS14L18
5-PRIME, mRNA sequence
Length = 423
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 249 ttcatgtcagcgtccagcagcacgttgctggccttga 213
>gb|CA003563.1|CA003563 HS14N23r HS Hordeum vulgare subsp. vulgare cDNA clone HS14N23
5-PRIME, mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 379 ttcatgtcagcgtccagcagcacgttgctggccttga 343
>gb|CA003661.1|CA003661 HS15C23r HS Hordeum vulgare subsp. vulgare cDNA clone HS15C23
5-PRIME, mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 249 ttcatgtcagcgtccagcagcacgttgctggccttga 213
>gb|CA029558.1|CA029558 HZ65J01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65J01
5-PRIME, mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.097
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 763 ttcatgtccgcgtccaggagaatgttgctggccttga 799
|||||||| |||||||| || | ||||||||||||||
Sbjct: 117 ttcatgtcggcgtccagcagcacgttgctggccttga 81
>gb|BE214668.1|BE214668 HV_CEb0004C12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004C12f, mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2466 gccggtgacggtgagcgtga 2485
||||||||||||||||||||
Sbjct: 555 gccggtgacggtgagcgtga 536
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 299,258
Number of Sequences: 312970
Number of extensions: 299258
Number of successful extensions: 86765
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86702
Number of HSP's gapped (non-prelim): 56
length of query: 2766
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2746
effective length of database: 168,875,139
effective search space: 463731131694
effective search space used: 463731131694
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)