BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763158.2.1
(826 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 46 0.002
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 42 0.029
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 40 0.11
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 40 0.11
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 38 0.45
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 38 0.45
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 38 0.45
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 38 0.45
gb|BG414631.2|BG414631 HVSMEk0003C16f Hordeum vulgare testa... 38 0.45
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 38 0.45
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 38 0.45
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 38 0.45
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 38 0.45
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 38 0.45
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 38 0.45
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 38 0.45
gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA li... 38 0.45
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 38 0.45
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 38 0.45
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 38 0.45
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 38 0.45
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 38 0.45
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 38 0.45
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 38 0.45
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 38 0.45
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 38 0.45
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 38 0.45
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 38 0.45
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 38 0.45
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 38 0.45
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 38 0.45
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 38 0.45
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 38 0.45
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 38 0.45
gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no... 38 0.45
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 38 0.45
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 38 0.45
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 38 0.45
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 38 0.45
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 38 0.45
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| |||||| | |||||||||
Sbjct: 701 ggctacttcgcgtggtctcttctcgacaactttgaatggatgtccggctac 751
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 290 cccacccatctacatcactgagaacgggatgggtgac 326
|||||| ||||||||||| || |||||||||| ||||
Sbjct: 205 cccaccgatctacatcaccgaaaacgggatggatgac 241
Score = 38.2 bits (19), Expect = 0.45
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaact 474
||||||||||| |||||||| |||||||||
Sbjct: 362 ggctacttcgcgtggtctctgctggacaact 392
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 443 gggctacttcgcttggtctctattggacaacttcga 478
|||||||||||| ||||| || |||||||||||||
Sbjct: 365 gggctacttcgcgtggtcgctgctggacaacttcga 330
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 443 gggctacttcgcttggtctctattggacaacttcga 478
|||||||||||| ||||| || |||||||||||||
Sbjct: 262 gggctacttcgcgtggtcgctgctggacaacttcga 297
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 309 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 359
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 619 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 669
>gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009H02f, mRNA sequence
Length = 793
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 334 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 284
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 385 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 435
>gb|BG414631.2|BG414631 HVSMEk0003C16f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003C16f, mRNA sequence
Length = 865
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 ccatggaagttgccttggatgac 368
|||||||| ||||||||||||||
Sbjct: 704 ccatggaaattgccttggatgac 682
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 243 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 293
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 311 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 261
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 256
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 300 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 250
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 256
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 292 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 242
>gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 3', mRNA sequence
Length = 510
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 306 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 256
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 298 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 248
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 279 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 229
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 307 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 257
>gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 3', mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
>gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O07 5', mRNA sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 231 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 281
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 234 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 284
>gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085B05F1, mRNA sequence
Length = 343
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 151 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 201
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 275 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 225
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 297 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 247
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 492 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 542
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 321 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 271
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 266 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 316
>gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_B14 5', mRNA sequence
Length = 343
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 16 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 66
>gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H06 5', mRNA sequence
Length = 433
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 109 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 159
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 466 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 516
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 285 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 335
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 301 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
>gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06M21
3-PRIME, mRNA sequence
Length = 403
Score = 38.2 bits (19), Expect = 0.45
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcgaatggttctccggctac 494
||||||||||| |||||||| | |||||||| || ||| | |||||||||
Sbjct: 325 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 275
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,833
Number of Sequences: 312970
Number of extensions: 66833
Number of successful extensions: 17787
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17709
Number of HSP's gapped (non-prelim): 78
length of query: 826
length of database: 175,134,539
effective HSP length: 19
effective length of query: 807
effective length of database: 169,188,109
effective search space: 136534803963
effective search space used: 136534803963
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)