BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. v... 50 8e-005
gb|BJ449089.1|BJ449089 BJ449089 K. Sato unpublished cDNA li... 40 0.079
gb|BJ449095.1|BJ449095 BJ449095 K. Sato unpublished cDNA li... 40 0.079
gb|BJ456549.1|BJ456549 BJ456549 K. Sato unpublished cDNA li... 40 0.079
gb|BJ456554.1|BJ456554 BJ456554 K. Sato unpublished cDNA li... 40 0.079
gb|BQ466584.1|BQ466584 HT02P08r HT Hordeum vulgare subsp. v... 40 0.079
gb|BQ660901.1|BQ660901 HI05P24u HI Hordeum vulgare subsp. v... 40 0.079
gb|BM371085.2|BM371085 EBro04_SQ003_H02_R root, 3 week, sal... 40 0.079
gb|BQ762242.1|BQ762242 EBro01_SQ005_B07 _R root, 3 week, hy... 40 0.079
gb|BQ763716.1|BQ763716 EBro03_SQ005_P06_R root, 3 week, wat... 40 0.079
gb|BU995188.1|BU995188 HM09H19r HM Hordeum vulgare subsp. v... 40 0.079
gb|CB858489.1|CB858489 HI07D17w HI Hordeum vulgare subsp. v... 40 0.079
gb|CB859126.1|CB859126 HI09G21w HI Hordeum vulgare subsp. v... 40 0.079
gb|CB859601.1|CB859601 HI10P14w HI Hordeum vulgare subsp. v... 40 0.079
gb|CB881332.1|CB881332 HM09H19w HM Hordeum vulgare subsp. v... 40 0.079
gb|AF334759.1|AF334759 Hordeum vulgare homeodomain protein ... 40 0.079
gb|AL508075.1|AL508075 AL508075 Hordeum vulgare Barke devel... 38 0.31
gb|AL511120.1|AL511120 AL511120 Hordeum vulgare Barke devel... 38 0.31
gb|BF628027.2|BF628027 HVSMEb0002N01f Hordeum vulgare seedl... 38 0.31
gb|BF630244.2|BF630244 HVSMEb0008H07f Hordeum vulgare seedl... 38 0.31
gb|BF619647.2|BF619647 HVSMEc0008C12f Hordeum vulgare seedl... 38 0.31
gb|BG344796.1|BG344796 HVSMEg0016B20f Hordeum vulgare pre-a... 38 0.31
gb|BI951916.1|BI951916 HVSMEm0003M04f Hordeum vulgare green... 38 0.31
gb|BI951979.1|BI951979 HVSMEm0004B11f Hordeum vulgare green... 38 0.31
gb|BI952307.1|BI952307 HVSMEm0005N12f Hordeum vulgare green... 38 0.31
gb|BI953228.1|BI953228 HVSMEm0011M05f Hordeum vulgare green... 38 0.31
gb|BI953560.1|BI953560 HVSMEm0013E07f Hordeum vulgare green... 38 0.31
gb|BG366844.2|BG366844 HVSMEi0008J13f Hordeum vulgare 20 DA... 38 0.31
gb|BM817283.1|BM817283 HC05G04_T3.ab1 HC Hordeum vulgare su... 38 0.31
gb|AJ461186.1|AJ461186 AJ461186 S00002 Hordeum vulgare subs... 38 0.31
gb|BJ453126.1|BJ453126 BJ453126 K. Sato unpublished cDNA li... 38 0.31
gb|BJ460675.1|BJ460675 BJ460675 K. Sato unpublished cDNA li... 38 0.31
gb|BJ467917.1|BJ467917 BJ467917 K. Sato unpublished cDNA li... 38 0.31
gb|BQ460613.1|BQ460613 HA06G18r HA Hordeum vulgare subsp. v... 38 0.31
gb|BQ657930.1|BQ657930 HA06G18u HA Hordeum vulgare subsp. v... 38 0.31
gb|BQ754130.1|BQ754130 EBca01_SQ002_O23_R carpel, pre-anthe... 38 0.31
gb|BQ765281.1|BQ765281 EBro03_SQ006_P18_R root, 3 week, wat... 38 0.31
gb|BU994848.1|BU994848 HM08G09r HM Hordeum vulgare subsp. v... 38 0.31
gb|CA019773.1|CA019773 HV13C02r HV Hordeum vulgare subsp. v... 38 0.31
gb|CA020235.1|CA020235 HV14L13r HV Hordeum vulgare subsp. v... 38 0.31
gb|CA027323.1|CA027323 HZ58I22r HZ Hordeum vulgare subsp. v... 38 0.31
gb|CA029506.1|CA029506 HZ65G17r HZ Hordeum vulgare subsp. v... 38 0.31
>gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D10
5-PRIME, mRNA sequence
Length = 563
Score = 50.1 bits (25), Expect = 8e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 493 cagctcggaggcccagacaaggccacgccgaaaaccatcatgagg 537
|||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 298 cagctcggaggcccggacaaggcaactccgaagactatcatgagg 342
>gb|BJ449089.1|BJ449089 BJ449089 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22g10 5', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 493 tctcactcactcactcactc 474
>gb|BJ449095.1|BJ449095 BJ449095 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22g21 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 482 tctcactcactcactcactc 463
>gb|BJ456549.1|BJ456549 BJ456549 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22g10 3', mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 40 tctcactcactcactcactc 59
>gb|BJ456554.1|BJ456554 BJ456554 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22g21 3', mRNA sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 2 tctcactcactcactcactc 21
>gb|BQ466584.1|BQ466584 HT02P08r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P08
5-PRIME, mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 544 tctcactcactcactcactc 525
>gb|BQ660901.1|BQ660901 HI05P24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05P24
3-PRIME, mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 72 tctcactcactcactcactc 91
>gb|BM371085.2|BM371085 EBro04_SQ003_H02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_H02 5', mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 93 tctcactcactcactcactc 112
>gb|BQ762242.1|BQ762242 EBro01_SQ005_B07 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_B07 5', mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 73 tctcactcactcactcactc 92
>gb|BQ763716.1|BQ763716 EBro03_SQ005_P06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_P06 5', mRNA sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 386 tctcactcactcactcactc 367
>gb|BU995188.1|BU995188 HM09H19r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H19
5-PRIME, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 551 tctcactcactcactcactc 532
>gb|CB858489.1|CB858489 HI07D17w HI Hordeum vulgare subsp. vulgare cDNA clone HI07D17
3-PRIME, mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 72 tctcactcactcactcactc 91
>gb|CB859126.1|CB859126 HI09G21w HI Hordeum vulgare subsp. vulgare cDNA clone HI09G21
3-PRIME, mRNA sequence
Length = 261
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 93 tctcactcactcactcactc 112
>gb|CB859601.1|CB859601 HI10P14w HI Hordeum vulgare subsp. vulgare cDNA clone HI10P14
3-PRIME, mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 93 tctcactcactcactcactc 112
>gb|CB881332.1|CB881332 HM09H19w HM Hordeum vulgare subsp. vulgare cDNA clone HM09H19
3-PRIME, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 93 tctcactcactcactcactc 112
>gb|AF334759.1|AF334759 Hordeum vulgare homeodomain protein JUBEL2 (JuBel2) gene, complete
cds
Length = 9112
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 tcactcactcactcactccc 95
||||||||||||||||||||
Sbjct: 3805 tcactcactcactcactccc 3824
>gb|AL508075.1|AL508075 AL508075 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07L07V 5',
mRNA sequence
Length = 678
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 23 ctcactcactcactcactc 5
>gb|AL511120.1|AL511120 AL511120 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A23u 3',
mRNA sequence
Length = 567
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 22 ctcactcactcactcactc 4
>gb|BF628027.2|BF628027 HVSMEb0002N01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002N01f, mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 633 ctcactcactcactcactc 615
>gb|BF630244.2|BF630244 HVSMEb0008H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008H07f, mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 22 ctcactcactcactcactc 4
>gb|BF619647.2|BF619647 HVSMEc0008C12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008C12f, mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 58 ctcactcactcactcactc 40
>gb|BG344796.1|BG344796 HVSMEg0016B20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016B20f, mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 37 ctcactcactcactcactc 55
>gb|BI951916.1|BI951916 HVSMEm0003M04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0003M04f, mRNA sequence
Length = 906
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tcagaagccaaattaaatt 61
|||||||||||||||||||
Sbjct: 139 tcagaagccaaattaaatt 157
>gb|BI951979.1|BI951979 HVSMEm0004B11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0004B11f, mRNA sequence
Length = 882
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 22 ctcactcactcactcactc 4
>gb|BI952307.1|BI952307 HVSMEm0005N12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0005N12f, mRNA sequence
Length = 428
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 32 ctcactcactcactcactc 14
>gb|BI953228.1|BI953228 HVSMEm0011M05f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011M05f, mRNA sequence
Length = 858
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 24 ctcactcactcactcactc 6
>gb|BI953560.1|BI953560 HVSMEm0013E07f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013E07f, mRNA sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 24 ctcactcactcactcactc 6
>gb|BG366844.2|BG366844 HVSMEi0008J13f Hordeum vulgare 20 DAP spike EST library
HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEi0008J13f, mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 79 ctcactcactcactcactc 97
>gb|BM817283.1|BM817283 HC05G04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05G04_T3.ab1, mRNA sequence
Length = 907
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcact 92
|||||||||||||||||||
Sbjct: 268 tctcactcactcactcact 250
>gb|AJ461186.1|AJ461186 AJ461186 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070A04F1, mRNA sequence
Length = 240
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcact 92
|||||||||||||||||||
Sbjct: 157 tctcactcactcactcact 139
>gb|BJ453126.1|BJ453126 BJ453126 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41m15 5', mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 363 ctcactcactcactcactc 345
>gb|BJ460675.1|BJ460675 BJ460675 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41m15 3', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 214 ctcactcactcactcactc 232
>gb|BJ467917.1|BJ467917 BJ467917 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30e22 3', mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 328 ctcactcactcactcactc 346
>gb|BQ460613.1|BQ460613 HA06G18r HA Hordeum vulgare subsp. vulgare cDNA clone HA06G18
5-PRIME, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 113 ctcactcactcactcactc 95
>gb|BQ657930.1|BQ657930 HA06G18u HA Hordeum vulgare subsp. vulgare cDNA clone HA06G18
3-PRIME, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 306 ctcactcactcactcactc 324
>gb|BQ754130.1|BQ754130 EBca01_SQ002_O23_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_O23 5', mRNA sequence
Length = 388
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 31 ctcactcactcactcactc 49
>gb|BQ765281.1|BQ765281 EBro03_SQ006_P18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_P18 5', mRNA sequence
Length = 509
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 242 ctcactcactcactcactc 224
>gb|BU994848.1|BU994848 HM08G09r HM Hordeum vulgare subsp. vulgare cDNA clone HM08G09
5-PRIME, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 17 ctcactcactcactcactc 35
>gb|CA019773.1|CA019773 HV13C02r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C02
5-PRIME, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 33 ctcactcactcactcactc 15
>gb|CA020235.1|CA020235 HV14L13r HV Hordeum vulgare subsp. vulgare cDNA clone HV14L13
5-PRIME, mRNA sequence
Length = 524
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 36 ctcactcactcactcactc 18
>gb|CA027323.1|CA027323 HZ58I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58I22
5-PRIME, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 33 ctcactcactcactcactc 15
>gb|CA029506.1|CA029506 HZ65G17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65G17
5-PRIME, mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 36 ctcactcactcactcactc 18
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,082
Number of Sequences: 312970
Number of extensions: 50082
Number of successful extensions: 13601
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13447
Number of HSP's gapped (non-prelim): 77
length of query: 583
length of database: 175,134,539
effective HSP length: 19
effective length of query: 564
effective length of database: 169,188,109
effective search space: 95422093476
effective search space used: 95422093476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)