BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA030942.1|CA030942 HX08J07r HX Hordeum vulgare subsp. v... 462 e-128
gb|AV934271.1|AV934271 AV934271 K. Sato unpublished cDNA li... 434 e-120
gb|BU987774.1|BU987774 HF15L16r HF Hordeum vulgare subsp. v... 402 e-111
gb|CA032804.1|CA032804 HX14E02r HX Hordeum vulgare subsp. v... 402 e-111
gb|AV933277.1|AV933277 AV933277 K. Sato unpublished cDNA li... 355 2e-096
gb|CA008952.1|CA008952 HU12K18r HU Hordeum vulgare subsp. v... 321 3e-086
gb|BJ472357.1|BJ472357 BJ472357 K. Sato unpublished cDNA li... 309 1e-082
gb|AW983082.3|AW983082 HVSMEg0008A15f Hordeum vulgare pre-a... 293 6e-078
gb|BQ470466.1|BQ470466 HX03B03r HX Hordeum vulgare subsp. v... 274 6e-072
gb|CA023546.1|CA023546 HZ46J12r HZ Hordeum vulgare subsp. v... 204 4e-051
gb|BI955563.1|BI955563 HVSMEm0023J10f Hordeum vulgare green... 170 6e-041
gb|AL506641.1|AL506641 AL506641 Hordeum vulgare Barke devel... 143 1e-032
gb|CA024140.1|CA024140 HZ48H14r HZ Hordeum vulgare subsp. v... 62 4e-008
gb|CA020404.1|CA020404 HZ36D03r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|BG367130.2|BG367130 HVSMEi0010M05f Hordeum vulgare 20 DA... 44 0.010
gb|BG300727.1|BG300727 HVSMEb0018C16f Hordeum vulgare seedl... 42 0.038
gb|BQ468551.1|BQ468551 HM01J06T HM Hordeum vulgare subsp. v... 42 0.038
gb|CK124963.1|CK124963 BES1824111A2d07 BES1824 Hordeum vulg... 42 0.038
>gb|CA030942.1|CA030942 HX08J07r HX Hordeum vulgare subsp. vulgare cDNA clone HX08J07
5-PRIME, mRNA sequence
Length = 622
Score = 462 bits (233), Expect = e-128
Identities = 389/441 (88%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct: 182 gatctgcatggcatggactggcgcttccgccatatcttccgtgggcaacctaggaggcat 241
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 242 ctccttcagagcggttggagtgtgtttgtcagttccaaaaggcttgtagctggggatgcc 301
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
|||||||||||||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 302 ttcattttcctcagaggagagagtggcgagcttcgtgttggtgttaggcgggctatgaga 361
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| |||| || || |||||||| || || ||||| || ||||||||||| ||||| |||
Sbjct: 362 cagctgtccaacgtgccttcttcagtcatttctagtcatagcatgcatcttggggtcctt 421
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctagg 300
|| |||||||||||||| || ||||| || ||||||||| ||||||||||| |||||
Sbjct: 422 gcaactgcatggcacgctatcaacacgaaaagcatgttcacggtctactacaaacctaga 481
Query: 301 acgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaat 360
||||||||||||||||| || || ||||||||||||||||||||||| || || |||||
Sbjct: 482 acgagcccttcagagttcattataccatatgatcaatatatggagtctgtgaagaacaac 541
Query: 361 tattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagagg 420
||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 542 tattcaattgggatgagattcaggatgaggtttgaaggcgaagaggcaccagagcaaagg 601
Query: 421 tttactggtacaatagttggc 441
||||||||||| |||||||||
Sbjct: 602 tttactggtactatagttggc 622
>gb|AV934271.1|AV934271 AV934271 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11l09 5', mRNA sequence
Length = 582
Score = 434 bits (219), Expect = e-120
Identities = 475/559 (84%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 37 ttccgcgggcaacccaggaggcatctccttcag-agtggttggagtgtttttgtcagttc 95
|||||||||||||| |||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 17 ttccgcgggcaacctaggaggcatctccttcagnagcggctggagtgtctttgtcagttc 76
Query: 96 caaaaggcttgttgctggagacgccttcattttcctcagaggagaaaacggtgaacttcg 155
|||||||||||| ||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct: 77 caaaaggcttgtcgctggggacgccttcattttcctcagaggagagagcggtgagcttcg 136
Query: 156 agttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttatatctag 215
|||||||| ||||| |||||||| ||| | || || || ||||||| || ||||||||
Sbjct: 137 tgttggtgtgaggcgggctatgagacagctttccaacatagcttcttcagtcatatctag 196
Query: 216 ccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaagtccat 275
|| || ||||| || || || ||||| ||||||||||| || || |||||||| ||||
Sbjct: 197 tcatagtatgcaccttggagtccttgcaactgcatggcatgctatcaacacaaaaaccat 256
Query: 276 gttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatatgatca 335
|||||||||||||||||| || ||||| |||| ||||||||| || || |||||||| |
Sbjct: 257 gttcactgtctactacaaacccaggacaagccgttcagagttcattataccatatgacaa 316
Query: 336 atatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgaggtttga 395
|||| |||||| || ||||||| |||||||||||||| ||| |||| ||||||||||||
Sbjct: 317 gtatacggagtctgttaaaaacatttattctattgggacgaggttcaagatgaggtttga 376
Query: 396 aggggaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaaatcttga 455
|||||||||||| || ||||| |||||||||||||| ||||||||| |||| ||||||||
Sbjct: 377 aggggaagaggcaccagagcaaaggtttactggtaccatagttggcagtgataatcttga 436
Query: 456 cccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagccttctac 515
|| | | ||||| || || || ||||||| | | |||||||| ||||||||| | || ||
Sbjct: 437 ccaattgtggccagaatcaagctggagatccctcaaggtgcgttgggatgagtcgtcaac 496
Query: 516 tatcccgcggccagataaggtctctccctggaagatagagcctgcttcatcacctcctgt 575
||| || ||||| |||| |||||||| ||| | |||||||| |||||||||||||||||
Sbjct: 497 tattccacggcccgatagagtctctccttgggaaatagagcccgcttcatcacctcctgt 556
Query: 576 taatcctctccctctttct 594
||| || || |||||||||
Sbjct: 557 taacccgcttcctctttct 575
>gb|BU987774.1|BU987774 HF15L16r HF Hordeum vulgare subsp. vulgare cDNA clone HF15L16
5-PRIME, mRNA sequence
Length = 591
Score = 402 bits (203), Expect = e-111
Identities = 456/539 (84%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 151 cttcgagttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttata 210
||||| |||||||||||||| |||||||| ||| |||| | || |||||||| || ||
Sbjct: 17 cttcgtgttggtgttaggcgggctatgagacagctgtccac-gtgccttcttcagtcatt 75
Query: 211 tctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaag 270
||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 76 tctagtcatagcatgcatcttggggtccttgcaactgcatggcacgctatcaacacgaaa 135
Query: 271 tccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatat 330
||||||||| ||||||||||| ||||| ||||||||||||||||| || || ||||||
Sbjct: 136 agcatgttcacggtctactacaaacctagaacgagcccttcagagttcattataccatat 195
Query: 331 gatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgagg 390
||||||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||
Sbjct: 196 gatcaatatatggagtctgtgaagaacaactattcaattgggatgagattcaggatgagg 255
Query: 391 tttgaaggggaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaaat 450
|||||||| |||||||| || ||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 256 tttgaaggcgaagaggcaccagagcaaaggtttactggtactatagttggcagtgaaaat 315
Query: 451 cttgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagcct 510
||||||| | | |||||||| || | ||||||| | |||||||| ||||| |||||
Sbjct: 316 cttgaccaattgtggcctgaatcaaactggagatctcttaaggtgcgttgggacgagccg 375
Query: 511 tctactatcccgcggccagataaggtctctccctggaagatagagcctgcttcatcacct 570
|| ||||| || || || |||| |||||||| ||||| |||||||| |||||||| |||
Sbjct: 376 tcaactattccacgtccggatagagtctctccttggaaaatagagccagcttcatcgcct 435
Query: 571 cctgttaatcctctccctctttctagaggaaaaagacctagacaaaatgcgcctccacct 630
|||||||| || || ||||||||| | | ||||||||||||| |||| |||||| |
Sbjct: 436 cctgttaacccgcttcctctttctcgggtcaaaagacctagaccgaatgttcctccagtt 495
Query: 631 tcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgatactgattctgc 689
|| |||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 496 tctcctgaatcgtctgttcttacaaaagaaggtgcaactaagattgatatggattctgc 554
>gb|CA032804.1|CA032804 HX14E02r HX Hordeum vulgare subsp. vulgare cDNA clone HX14E02
5-PRIME, mRNA sequence
Length = 655
Score = 402 bits (203), Expect = e-111
Identities = 456/539 (84%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 151 cttcgagttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttata 210
||||| |||||||||||||| |||||||| ||| |||| | || |||||||| || ||
Sbjct: 16 cttcgtgttggtgttaggcgggctatgagacagctgtccac-gtgccttcttcagtcatt 74
Query: 211 tctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaag 270
||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 75 tctagtcatagcatgcatcttggggtccttgcaactgcatggcacgctatcaacacgaaa 134
Query: 271 tccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatat 330
||||||||| ||||||||||| ||||| ||||||||||||||||| || || ||||||
Sbjct: 135 agcatgttcacggtctactacaaacctagaacgagcccttcagagttcattataccatat 194
Query: 331 gatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgagg 390
||||||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||
Sbjct: 195 gatcaatatatggagtctgtgaagaacaactattcaattgggatgagattcaggatgagg 254
Query: 391 tttgaaggggaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaaat 450
|||||||| |||||||| || ||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 255 tttgaaggcgaagaggcaccagagcaaaggtttactggtactatagttggcagtgaaaat 314
Query: 451 cttgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagcct 510
||||||| | | |||||||| || | ||||||| | |||||||| ||||| |||||
Sbjct: 315 cttgaccaattgtggcctgaatcaaactggagatctcttaaggtgcgttgggacgagccg 374
Query: 511 tctactatcccgcggccagataaggtctctccctggaagatagagcctgcttcatcacct 570
|| ||||| || || || |||| |||||||| ||||| |||||||| |||||||| |||
Sbjct: 375 tcaactattccacgtccggatagagtctctccttggaaaatagagccagcttcatcgcct 434
Query: 571 cctgttaatcctctccctctttctagaggaaaaagacctagacaaaatgcgcctccacct 630
|||||||| || || ||||||||| | | ||||||||||||| |||| |||||| |
Sbjct: 435 cctgttaacccgcttcctctttctcgggtcaaaagacctagaccgaatgttcctccagtt 494
Query: 631 tcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgatactgattctgc 689
|| |||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 495 tctcctgaatcgtctgttcttacaaaagaaggtgcaactaagattgatatggattctgc 553
Score = 42.1 bits (21), Expect = 0.038
Identities = 56/67 (83%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 711 ggtcttgcaaagtcaagagcagatgagctttagga---acaacctgactgaaagcaccga 767
|||||||||| |||||||||| |||| ||| |||| |||||||||||| |||| ||
Sbjct: 584 ggtcttgcaaggtcaagagcacatgaccttgaggaccaacaacctgactggcagcaatga 643
Query: 768 ctctgat 774
|||||||
Sbjct: 644 ctctgat 650
>gb|AV933277.1|AV933277 AV933277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6b18 5', mRNA sequence
Length = 667
Score = 355 bits (179), Expect = 2e-096
Identities = 305/347 (87%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct: 317 gatctgcatggcatggactggcgcttccgccatatcttccgtgggcaacctaggaggcat 376
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 377 ctccttcagagcggttggagtgtgtttgtcagttccaaaaggcttgtagctggggatgcc 436
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
|||||||||||||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 437 ttcattttcctcagaggagagagtggcgagcttcgtgttggtgttaggcgggctatgaga 496
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| |||| || || |||||||| || || ||||| || ||||||||||| ||||| |||
Sbjct: 497 cagctgtccaacgtgccttcttcagtcatttctagtcatagcatgcatcttggggtcctt 556
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctagg 300
|| |||||||||||||| || ||||| || ||||||||| ||||||||||| |||||
Sbjct: 557 gcaactgcatggcacgctatcaacacgaaaagcatgttcacggtctactacaaacctaga 616
Query: 301 acgagcccttcagagtttatcattccatatgatcaatatatggagtc 347
||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 617 acgagcccttcagagttcattataccatatgatcaatatatggagtc 663
>gb|CA008952.1|CA008952 HU12K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU12K18
5-PRIME, mRNA sequence
Length = 609
Score = 321 bits (162), Expect = 3e-086
Identities = 309/358 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 251 gatctgcatggcatggagtggcgcttccgccacattttccgcgggcaacctaggaggcat 310
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
||||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 311 ctccttcagagcggctggagtgtctttgtcagttccaaaaggcttgtcgctggggacgcc 370
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
|||||||||||||||||||| | |||||| ||||| |||||||| ||||| ||||||||
Sbjct: 371 ttcattttcctcagaggagagagcggtgagcttcgtgttggtgtgaggcgggctatgaga 430
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| | || || || ||||||| || |||||||| || || ||||| || || || |||
Sbjct: 431 cagctttccaacatagcttcttcagtcatatctagtcatagtatgcaccttggagtcctt 490
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctagg 300
|| ||||||||||| || || |||||||| |||||||||||||||||||||| || |||
Sbjct: 491 gcaactgcatggcatgctatcaacacaaaaaccatgttcactgtctactacaaacccagg 550
Query: 301 acgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaaca 358
|| |||| ||||||||| || || |||||||| | |||| |||||| || |||||||
Sbjct: 551 acaagccgttcagagttcattataccatatgacaagtatacggagtctgttaaaaaca 608
>gb|BJ472357.1|BJ472357 BJ472357 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33n21 5', mRNA sequence
Length = 684
Score = 309 bits (156), Expect = 1e-082
Identities = 381/456 (83%)
Strand = Plus / Plus
Query: 238 cttgcgactgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcct 297
||||| ||||||||||| || || |||||||| |||||||||||||||||||||| ||
Sbjct: 46 cttgcaactgcatggcatgctatcaacacaaaaaccatgttcactgtctactacaaaccc 105
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||| |||| ||||||||| || || |||||||| | |||| |||||| || ||||||
Sbjct: 106 aggacaagccgttcagagttcattataccatatgacaagtatacggagtctgttaaaaac 165
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
| |||||||||||||| ||| |||| |||||||||||||||||||||||| || |||||
Sbjct: 166 atttattctattgggacgaggttcaagatgaggtttgaaggggaagaggcaccagagcaa 225
Query: 418 aggtttactggtacaatagttggctgtgaaaatcttgacccactatggcctgattccagt 477
|||||||||||||| ||||||||| |||| |||||||||| | | ||||| || || ||
Sbjct: 226 aggtttactggtaccatagttggcagtgataatcttgaccaattgtggccagaatcaagc 285
Query: 478 tggagatacttgaaggtgcgctgggatgagccttctactatcccgcggccagataaggtc 537
||||||| | | |||||||| ||||||||| | || ||||| || ||||| |||| |||
Sbjct: 286 tggagatccctcaaggtgcgttgggatgagtcgtcaactattccacggcccgatagagtc 345
Query: 538 tctccctggaagatagagcctgcttcatcacctcctgttaatcctctccctctttctaga 597
||||| ||| | |||||||| |||||||||||||||||||| || || ||||||||| |
Sbjct: 346 tctccttgggaaatagagcccgcttcatcacctcctgttaacccgcttcctctttctcgg 405
Query: 598 ggaaaaagacctagacaaaatgcgcctccaccttcccctgaatcatctgttctcacaaaa 657
| |||||| | |||| ||||| |||||| |||| |||||||| ||||||| ||||||
Sbjct: 406 gccaaaagatccagaccaaatgttcctccagcttctcctgaatcgtctgttcgtacaaaa 465
Query: 658 gaaggtgcaaccaagattgatactgattctgctcaa 693
||||||||||| ||| ||||| |||| |||||||
Sbjct: 466 gaaggtgcaacgaaggctgatatggattgtgctcaa 501
>gb|AW983082.3|AW983082 HVSMEg0008A15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008A15f, mRNA sequence
Length = 806
Score = 293 bits (148), Expect = 6e-078
Identities = 391/471 (83%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 220 agcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaagtccatgttc 279
||||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||||
Sbjct: 22 agcatgcatcttggggtccttgcaactgcatggcacgctatgaacacgaaaagcatgtta 81
Query: 280 actgtctactacaagcctaggacgagcccttcagagtttatcattccatatgatcaatat 339
|| ||||||||||| ||||| ||||||||||||||||| || || |||||||||||||||
Sbjct: 82 acggtctactacaaacctagaacgagcccttcagagttgattataccatatgatcaatat 141
Query: 340 atggagtcagtaaaaaacaattattctattgggatgagattcaggatgaggtttgaaggg 399
|||||||| || || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 142 atggagtctgtgaagaacaactattcaattgggatgagattcaagatgaggtttgaaggc 201
Query: 400 gaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaaatcttgaccca 459
|||||||| || |||| |||||||||||||| ||||||||| ||||||||||||||| |
Sbjct: 202 gaagaggcaccatagcaaaggtttactggtactatagttggcagtgaaaatcttgaccaa 261
Query: 460 ctatggcctgattccagttggagatacttgaaggtgcgctgggatgagccttc-tactat 518
| ||| |||| || | ||||||| | || ||||| ||||||||||| || |||||
Sbjct: 262 ttgtgggctgaatcaaactggagatctcttaatgtgcgttgggatgagccgtcagactat 321
Query: 519 cccgcggccagataaggtctctccctggaagatagagcctgcttcatcacctcctgttaa 578
|| || | |||| |||||||| ||||| |||||||| |||||||| ||| |||||||
Sbjct: 322 tccacgtncggatagagtctctccttggaaaatagagccagcttcatcgcctgctgttaa 381
Query: 579 tcctctccctctttctagaggaaaaagacctagacaaaatgcgcctccaccttcccctga 638
|| || ||||||||| | | ||||||||||||| |||| ||| || ||| |||||
Sbjct: 382 cccgcttcctctttctcgggtcaaaagacctagaccgaatgttcctacagtttctcctga 441
Query: 639 atcatctgttctcacaaaagaaggtgcaaccaagattgatactgattctgc 689
||| ||||||| ||||||||| ||||||| |||||||||| ||||||||
Sbjct: 442 atcgactgttcttacaaaagaaagtgcaactaagattgatatggattctgc 492
Score = 40.1 bits (20), Expect = 0.15
Identities = 43/50 (86%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 711 ggtcttgcaaagtcaagagcagatgagctttagga---acaacctgactg 757
|||||||||| |||||||||| |||| ||| |||| ||||||||||||
Sbjct: 523 ggtcttgcaaggtcaagagcacatgaccttgaggaccaacaacctgactg 572
>gb|BQ470466.1|BQ470466 HX03B03r HX Hordeum vulgare subsp. vulgare cDNA clone HX03B03
5-PRIME, mRNA sequence
Length = 632
Score = 274 bits (138), Expect = 6e-072
Identities = 234/266 (87%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct: 358 gatctgcatggcatggactggcgcttccgccatatcttccgtgggcaacctaggaggcat 417
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 418 ctccttcagagcggttggagtgtgtttgtcagttccaaaaggcttgtagctggggatgcc 477
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
|||||||||||||||||||| | || || ||||| |||||||||||||| ||||||||
Sbjct: 478 ttcattttcctcagaggagagagtggcgagcttcgtgttggtgttaggcgggctatgaga 537
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| |||| || || |||||||| || || ||||| || ||||||||||| ||||| |||
Sbjct: 538 cagctgtccaacgtgccttcttcagtcatttctagtcatagcatgcatcttggggtcctt 597
Query: 241 gcgactgcatggcacgcgattaacac 266
|| |||||||||||||| || |||||
Sbjct: 598 gcaactgcatggcacgctatcaacac 623
>gb|CA023546.1|CA023546 HZ46J12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46J12
5-PRIME, mRNA sequence
Length = 550
Score = 204 bits (103), Expect = 4e-051
Identities = 262/315 (83%)
Strand = Plus / Plus
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| |||||||||||||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct: 12 ttcaagatgaggtttgaaggggaagaggcaccagagcaaaggtttactggtaccatagtt 71
Query: 439 ggctgtgaaaatcttgacccactatggcctgattccagttggagatacttgaaggtgcgc 498
||| |||| |||||||||| | | ||||| || || || ||||||| | | ||||||||
Sbjct: 72 ggcagtgataatcttgaccaattgtggccagaatcaagctggagatccctcaaggtgcgt 131
Query: 499 tgggatgagccttctactatcccgcggccagataaggtctctccctggaagatagagcct 558
||||||||| | || ||||| || ||||| |||| |||||||| ||| | ||||||||
Sbjct: 132 tgggatgagtcgtcaactattccacggcccgatagagtctctccttgggaaatagagccc 191
Query: 559 gcttcatcacctcctgttaatcctctccctctttctagaggaaaaagacctagacaaaat 618
|||||||||||||||||||| || || ||||||||| | | |||||| | |||| ||||
Sbjct: 192 gcttcatcacctcctgttaacccgcttcctctttctcgggccaaaagatccagaccaaat 251
Query: 619 gcgcctccaccttcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgat 678
| |||||| |||| |||||||| ||||||| ||||||||||||||||| ||| ||||
Sbjct: 252 gttcctccagcttctcctgaatcgtctgttcgtacaaaagaaggtgcaacgaaggctgat 311
Query: 679 actgattctgctcaa 693
| |||| |||||||
Sbjct: 312 atggattgtgctcaa 326
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 875 gaaggcgtgaaactgacttcaaggatgcc 903
||||||||||| ||||||| |||||||||
Sbjct: 517 gaaggcgtgaagctgactttaaggatgcc 545
>gb|BI955563.1|BI955563 HVSMEm0023J10f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023J10f, mRNA sequence
Length = 690
Score = 170 bits (86), Expect = 6e-041
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 325 ccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcagg 384
||||||||||||||||||||||| || || ||||| ||||| ||||||||||||||||||
Sbjct: 33 ccatatgatcaatatatggagtctgtgaagaacaactattcaattgggatgagattcagg 92
Query: 385 atgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagttggctgt 444
|||||||||||||| |||||||| || |||| |||||||||||||| ||||||||| ||
Sbjct: 93 atgaggtttgaaggcgaagaggcaccanagcaaaggtttactggtactatagttggcagt 152
Query: 445 gaaaatcttgacc 457
|||||||||||||
Sbjct: 153 gaaaatcttgacc 165
Score = 143 bits (72), Expect = 1e-032
Identities = 168/200 (84%)
Strand = Plus / Plus
Query: 490 aaggtgcgctgggatgagccttctactatcccgcggccagataaggtctctccctggaag 549
|||||||| ||||||||||| || ||||| || || || |||| |||||||| |||||
Sbjct: 199 aaggtgcgttgggatgagccgtcaactattccacgtccggatagagtctctccttggaaa 258
Query: 550 atagagcctgcttcatcacctcctgttaatcctctccctctttctagaggaaaaagacct 609
|||||||| |||||||| ||||||||||| || || ||||||||| | | |||||||||
Sbjct: 259 atagagccagcttcatcgcctcctgttaacccgcttcctctttctcgggtcaaaagacct 318
Query: 610 agacaaaatgcgcctccaccttcccctgaatcatctgttctcacaaaagaaggtgcaacc 669
|||| |||| |||||| ||| |||||||| |||||||| |||||||||||||||||
Sbjct: 319 agaccgaatgttcctccagtttctcctgaatcgtctgttcttacaaaagaaggtgcaact 378
Query: 670 aagattgatactgattctgc 689
|||||||||| ||||||||
Sbjct: 379 aagattgatatggattctgc 398
Score = 67.9 bits (34), Expect = 7e-010
Identities = 90/108 (83%), Gaps = 3/108 (2%)
Strand = Plus / Plus
Query: 711 ggtcttgcaaagtcaagagcagatgagctttagga---acaacctgactgaaagcaccga 767
|||||||||| |||||||||| |||| ||| |||| |||||||||||| |||| ||
Sbjct: 429 ggtcttgcaaggtcaagagcacatgaccttgaggaccaacaacctgactgggagcaatga 488
Query: 768 ctctgattccactgttcagaagcagatgatgtggtccccatcacccaa 815
||||||| | ||||| ||||||| ||||||||||| ||||| |||||
Sbjct: 489 ctctgatgctactgtccagaagcctatgatgtggtctccatcccccaa 536
>gb|AL506641.1|AL506641 AL506641 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03M18T 5',
mRNA sequence
Length = 700
Score = 143 bits (72), Expect = 1e-032
Identities = 203/247 (82%)
Strand = Plus / Plus
Query: 443 gtgaaaatcttgacccactatggcctgattccagttggagatacttgaaggtgcgctggg 502
||||||||||||||| | | |||||||| || | ||||||| | |||||||| ||||
Sbjct: 6 gtgaaaatcttgaccaattgtggcctgaatcaaactggagatctnttaaggtgcgttggg 65
Query: 503 atgagccttctactatcccgcggccagataaggtctctccctggaagatagagcctgctt 562
| ||||| || ||||| || || || |||| |||||||| ||||| |||||||| ||||
Sbjct: 66 acgagccgtcaactattccacgtccggatagagtctctccttggaaaatagagccagctt 125
Query: 563 catcacctcctgttaatcctctccctctttctagaggaaaaagacctagacaaaatgcgc 622
|||| ||||||||||| || || ||||||||| | | ||||||||||||| |||| |
Sbjct: 126 catcgcctcctgttaacccgcttcctctttctcgggtcaaaagacctagaccgaatgttc 185
Query: 623 ctccaccttcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgatactg 682
||||| ||| |||||||| |||||||| ||||||||||||||||| |||||||||| |
Sbjct: 186 ctccagtttctcctgaatcgtctgttcttacaaaagaaggtgcaactaagattgatatgg 245
Query: 683 attctgc 689
|||||||
Sbjct: 246 attctgc 252
Score = 67.9 bits (34), Expect = 7e-010
Identities = 90/108 (83%), Gaps = 3/108 (2%)
Strand = Plus / Plus
Query: 711 ggtcttgcaaagtcaagagcagatgagctttagga---acaacctgactgaaagcaccga 767
|||||||||| |||||||||| |||| ||| |||| |||||||||||| |||| ||
Sbjct: 283 ggtcttgcaaggtcaagagcacatgaccttgaggaccaacaacctgactggcagcaatga 342
Query: 768 ctctgattccactgttcagaagcagatgatgtggtccccatcacccaa 815
||||||| | ||||| ||||||| ||||||||||| ||||| |||||
Sbjct: 343 ctctgatgctactgtccagaagcctatgatgtggtctccatcccccaa 390
>gb|CA024140.1|CA024140 HZ48H14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H14
5-PRIME, mRNA sequence
Length = 402
Score = 61.9 bits (31), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacat 35
||||||||||||||||||||||| |||||||||||
Sbjct: 366 gatctgcatggcatggagtggcgcttccgccacat 400
>gb|CA020404.1|CA020404 HZ36D03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36D03
5-PRIME, mRNA sequence
Length = 593
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 629 cttcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgatactgattctg 688
|||| |||||||| ||||||| ||||||||||||||||| ||| ||||| |||| ||
Sbjct: 15 cttctcctgaatcgtctgttcgtacaaaagaaggtgcaacgaaggctgatatggattgtg 74
Query: 689 ctcaa 693
|||||
Sbjct: 75 ctcaa 79
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 875 gaaggcgtgaaactgacttcaaggatgcc 903
||||||||||| ||||||| |||||||||
Sbjct: 270 gaaggcgtgaagctgactttaaggatgcc 298
>gb|BG367130.2|BG367130 HVSMEi0010M05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M05f, mRNA sequence
Length = 787
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 870 attgggaaggcgtgaaactgacttcaaggatgcc 903
|||| ||||||||||| ||||||| |||||||||
Sbjct: 93 attgcgaaggcgtgaagctgactttaaggatgcc 126
>gb|BG300727.1|BG300727 HVSMEb0018C16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018C16f, mRNA sequence
Length = 863
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 875 gaaggcgtgaaactgacttcaaggatgcc 903
||||||||||| ||||||| |||||||||
Sbjct: 35 gaaggcgtgaagctgactttaaggatgcc 63
>gb|BQ468551.1|BQ468551 HM01J06T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J06
5-PRIME, mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 875 gaaggcgtgaaactgacttcaaggatgcc 903
||||||||||| ||||||| |||||||||
Sbjct: 127 gaaggcgtgaagctgactttaaggatgcc 155
>gb|CK124963.1|CK124963 BES1824111A2d07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D0711 5-PRIME, mRNA sequence
Length = 935
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 875 gaaggcgtgaaactgacttcaaggatgcc 903
||||||||||| ||||||| |||||||||
Sbjct: 239 gaaggcgtgaagctgactttaaggatgcc 267
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,371
Number of Sequences: 312970
Number of extensions: 79371
Number of successful extensions: 19828
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19786
Number of HSP's gapped (non-prelim): 35
length of query: 1095
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1076
effective length of database: 169,188,109
effective search space: 182046405284
effective search space used: 182046405284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)