BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI956639.1|BI956639 HVSMEn0004I06f Hordeum vulgare rachi... 40 0.090
gb|CB880937.1|CB880937 HM08E14w HM Hordeum vulgare subsp. v... 40 0.090
gb|AV836901.1|AV836901 AV836901 K. Sato unpublished cDNA li... 38 0.35
gb|BJ453083.1|BJ453083 BJ453083 K. Sato unpublished cDNA li... 38 0.35
gb|BJ457830.1|BJ457830 BJ457830 K. Sato unpublished cDNA li... 38 0.35
gb|BJ460633.1|BJ460633 BJ460633 K. Sato unpublished cDNA li... 38 0.35
gb|BJ465325.1|BJ465325 BJ465325 K. Sato unpublished cDNA li... 38 0.35
gb|BJ467699.1|BJ467699 BJ467699 K. Sato unpublished cDNA li... 38 0.35
gb|BJ468569.1|BJ468569 BJ468569 K. Sato unpublished cDNA li... 38 0.35
gb|BU997501.1|BU997501 HI08C22r HI Hordeum vulgare subsp. v... 38 0.35
>gb|BI956639.1|BI956639 HVSMEn0004I06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I06f, mRNA sequence
Length = 850
Score = 40.1 bits (20), Expect = 0.090
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 1 gagatggcgagcgccggcgcggcg 24
>gb|CB880937.1|CB880937 HM08E14w HM Hordeum vulgare subsp. vulgare cDNA clone HM08E14
3-PRIME, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.090
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 584 cttctgcaagaccttgactgcttcagatacaagtacccatggtggatt 631
|||||||||||| |||| ||| ||||||||||| |||||||||||
Sbjct: 559 cttctgcaagactttgagtgcaagtgatacaagtacacatggtggatt 512
>gb|AV836901.1|AV836901 AV836901 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd20j19, mRNA
sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 530 ctgaaactgattctgatga 512
>gb|BJ453083.1|BJ453083 BJ453083 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41j23 5', mRNA sequence
Length = 604
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 21 ctgaaactgattctgatga 39
>gb|BJ457830.1|BJ457830 BJ457830 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29h08 3', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 369 ctgaaactgattctgatga 351
>gb|BJ460633.1|BJ460633 BJ460633 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41j23 3', mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 561 ctgaaactgattctgatga 543
>gb|BJ465325.1|BJ465325 BJ465325 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39g02 5', mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 92 ctgaaactgattctgatga 110
>gb|BJ467699.1|BJ467699 BJ467699 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29h17 3', mRNA sequence
Length = 444
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 384 ctgaaactgattctgatga 366
>gb|BJ468569.1|BJ468569 BJ468569 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39g02 3', mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 ctgaaactgattctgatga 484
|||||||||||||||||||
Sbjct: 554 ctgaaactgattctgatga 536
>gb|BU997501.1|BU997501 HI08C22r HI Hordeum vulgare subsp. vulgare cDNA clone HI08C22
5-PRIME, mRNA sequence
Length = 575
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 227 gagcgccggcgtggcgggc 245
|||||||||||||||||||
Sbjct: 494 gagcgccggcgtggcgggc 476
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,912
Number of Sequences: 312970
Number of extensions: 92912
Number of successful extensions: 36141
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36129
Number of HSP's gapped (non-prelim): 11
length of query: 660
length of database: 175,134,539
effective HSP length: 19
effective length of query: 641
effective length of database: 169,188,109
effective search space: 108449577869
effective search space used: 108449577869
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)