BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 107 4e-022
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 107 4e-022
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 103 7e-021
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 100 1e-019
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 100 1e-019
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 98 4e-019
gb|CV058907.1|CV058907 BNEL42c7 Barley EST endosperm librar... 88 4e-016
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 66 1e-009
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 62 2e-008
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 60 9e-008
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 52 2e-005
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 52 2e-005
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 52 2e-005
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 52 2e-005
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 52 2e-005
gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachi... 46 0.001
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 46 0.001
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 46 0.001
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 44 0.005
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 44 0.005
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 42 0.021
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 42 0.021
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 42 0.021
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 42 0.021
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 42 0.021
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 42 0.021
gb|AL506472.1|AL506472 AL506472 Hordeum vulgare Barke devel... 40 0.084
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 40 0.084
gb|BI952042.1|BI952042 HVSMEm0004F02f Hordeum vulgare green... 40 0.084
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 40 0.084
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 40 0.084
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 40 0.084
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 40 0.084
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 40 0.084
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 40 0.084
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 40 0.084
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 40 0.084
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 40 0.084
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 40 0.084
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 40 0.084
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 40 0.084
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 40 0.084
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 40 0.084
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 40 0.084
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 40 0.084
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 40 0.084
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 40 0.084
gb|CB883284.1|CB883284 HQ01L24w HQ Hordeum vulgare subsp. v... 40 0.084
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 38 0.33
gb|BE213713.2|BE213713 HV_CEb0001B04f Hordeum vulgare seedl... 38 0.33
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 38 0.33
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 38 0.33
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 38 0.33
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 107 bits (54), Expect = 4e-022
Identities = 158/193 (81%)
Strand = Plus / Minus
Query: 423 catgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaa 482
|||||||||||| ||| || |||||||||||| ||||||||||| ||||| || |
Sbjct: 282 catgagctccaccgacgacaggtcgccgtcgccgtcctcgtactcgatgagcacggcgag 223
Query: 483 gtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagctgca 542
||||| | ||| |||||||||||||||||||| || | || |||||| |||| ||||
Sbjct: 222 gtagtaggggttggagccggcgtccaccttgaaggctacgtgcatcccccgccagttgca 163
Query: 543 cggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcctggcc 602
||| ||||| | ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct: 162 cgggacccgtgtgtactggatttggagacgtccggccgcgcgaagctggtcggcctggcc 103
Query: 603 gggcttcgccatg 615
|||||||||||||
Sbjct: 102 gggcttcgccatg 90
Score = 89.7 bits (45), Expect = 1e-016
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 221 agttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctgg 280
|||||||||| |||||||| ||| |||| ||| |||| || ||||||||||||| || |
Sbjct: 478 agttgacgacggagcggtaggtgccgccaggcttccagccggcggggatgacgttacttg 419
Query: 281 cgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggcccctgcagggtgg 340
| |||| ||| ||||||||| || ||||||||||| ||||||||| | |||| | |
Sbjct: 418 ccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgcatgcaacattg 359
Query: 341 cgccggagttgnacctccacaccgngccccacgac 375
||||||||| |||||||||||| ||||||||||
Sbjct: 358 gcccggagttgtacctccacaccgcgccccacgac 324
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 107 bits (54), Expect = 4e-022
Identities = 158/193 (81%)
Strand = Plus / Minus
Query: 423 catgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaa 482
|||||||||||| ||| || |||||||||||| ||||||||||| ||||| || |
Sbjct: 296 catgagctccaccgacgacaggtcgccgtcgccgtcctcgtactcgatgagcacggcgag 237
Query: 483 gtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagctgca 542
||||| | ||| |||||||||||||||||||| || | || |||||| |||| ||||
Sbjct: 236 gtagtaggggttggagccggcgtccaccttgaaggctacgtgcatcccccgccagttgca 177
Query: 543 cggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcctggcc 602
||| ||||| | ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct: 176 cgggacccgtgtgtactggatttggagacgtccggccgcgcgaagctggtcggcctggcc 117
Query: 603 gggcttcgccatg 615
|||||||||||||
Sbjct: 116 gggcttcgccatg 104
Score = 97.6 bits (49), Expect = 4e-019
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 221 agttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctgg 280
|||||||||| |||||||| ||| |||||||| |||| || ||||||||||||| || |
Sbjct: 492 agttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgttacttg 433
Query: 281 cgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggcccctgcagggtgg 340
| |||| ||| ||||||||| || ||||||||||| ||||||||| | |||| | |
Sbjct: 432 ccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgcatgcaacattg 373
Query: 341 cgccggagttgnacctccacaccgngccccacgac 375
||||||||| |||||||||||| ||||||||||
Sbjct: 372 gcccggagttgtacctccacaccgcgccccacgac 338
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 103 bits (52), Expect = 7e-021
Identities = 141/171 (82%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtagttcgcgttcgagccggcg 504
|||||||||||| ||||||||||| ||||| || | ||||| | ||| |||||||||
Sbjct: 488 tcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggttggagccggcg 429
Query: 505 tccaccttgaacgcgatgtccatcccgttccagctgcacggcacccgggngtactggatc 564
||||||||||| || | || |||||| |||| ||||||| ||||| | |||||||||
Sbjct: 428 tccaccttgaaggctacgtgcatcccccgccagttgcacgggacccgtgtgtactggatt 369
Query: 565 ctgaggcgtccggcgctgcggagctggtcggcctggccgggcttcgccatg 615
||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 368 tggagacgtccggccgcgcgaagctggtcggcctggccgggcttcgccatg 318
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 99.6 bits (50), Expect = 1e-019
Identities = 157/193 (81%)
Strand = Plus / Minus
Query: 423 catgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaa 482
|||||||||||| ||| || |||||||||||| ||||||||||| ||||| || |
Sbjct: 600 catgagctccaccgacgacaggtcgccgtcgccgtcctcgtactcgatgagcacggcgag 541
Query: 483 gtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagctgca 542
||||| | ||| |||||||||||||||||||| || | || |||||| |||| ||||
Sbjct: 540 gtagtaggggttggagccggcgtccaccttgaaggctacgtgcatcccccgccagttgca 481
Query: 543 cggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcctggcc 602
||| | ||| | ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct: 480 cgggaaccgtgtgtactggatttggagacgtccggccgcgcgaagctggtcggcctggcc 421
Query: 603 gggcttcgccatg 615
|||||||||||||
Sbjct: 420 gggcttcgccatg 408
Score = 42.1 bits (21), Expect = 0.021
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 345 ggagttgnacctccacaccgngcccca 371
||||||| |||||||||||| ||||||
Sbjct: 672 ggagttgtacctccacaccgcgcccca 646
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 99.6 bits (50), Expect = 1e-019
Identities = 157/193 (81%)
Strand = Plus / Minus
Query: 423 catgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaa 482
|||||||||||| ||| || |||||||||||| ||||||||| | ||||| || |
Sbjct: 650 catgagctccaccgacgacaggtcgccgtcgccgtcctcgtactcaatgagcacggcgag 591
Query: 483 gtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagctgca 542
||||| | ||| |||||||||||||||||||| || | || |||||| |||| ||||
Sbjct: 590 gtagtaggggttggagccggcgtccaccttgaaggctacgtgcatcccccgccagttgca 531
Query: 543 cggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcctggcc 602
||| ||||| | ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct: 530 cgggacccgtgtgtactggatttggagacgtccggccgcgcgaagctggtcggcctggcc 471
Query: 603 gggcttcgccatg 615
|||||||||||||
Sbjct: 470 gggcttcgccatg 458
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 97.6 bits (49), Expect = 4e-019
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 221 agttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctgg 280
|||||||||| |||||||| ||| |||||||| |||| || ||||||||||||| || |
Sbjct: 197 agttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgttacttg 138
Query: 281 cgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggcccctgcagggtgg 340
| |||| ||| ||||||||| || ||||||||||| ||||||||| | |||| | |
Sbjct: 137 ccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgcatgcaacattg 78
Query: 341 cgccggagttgnacctccacaccgngccccacgac 375
||||||||| |||||||||||| ||||||||||
Sbjct: 77 gcccggagttgtacctccacaccgcgccccacgac 43
>gb|CV058907.1|CV058907 BNEL42c7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42c7 5' similar to beta-expansin,
mRNA sequence
Length = 502
Score = 87.7 bits (44), Expect = 4e-016
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 313 cggacggagaagggcccctgcagggtggcgccggagttgnacctccacaccgngccccac 372
|||| ||||||||||||||| ||||||| |||||||||| | ||||||||| ||||||
Sbjct: 133 cggatggagaagggcccctggagggtggagccggagttgagcttccacaccgcgccccat 74
Query: 373 gactgctgcatcgg 386
||||||||||||||
Sbjct: 73 gactgctgcatcgg 60
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 65.9 bits (33), Expect = 1e-009
Identities = 125/155 (80%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 221 agttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctgg 280
|||||||||| |||||||| || ||| |||| | || || ||||||||||||| || |
Sbjct: 450 agttgacgacggagcggtaggtcccgc-gggctttcagccggcggggatgacgttacttg 392
Query: 281 cgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggcccctgcagggtgg 340
| |||| ||| ||||||||| || ||||||||||| ||||||||| | |||| | |
Sbjct: 391 ccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgcatgcaacattg 332
Query: 341 cgccggagttgnacctccacaccgngccccacgac 375
||||||||| |||||||||||| ||||||||||
Sbjct: 331 gcccggagttgtacctccacaccgcgccccacgac 297
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 589 tggtcggcctggccgggcttcgccatg 615
|||||||||||||||||||||||||||
Sbjct: 89 tggtcggcctggccgggcttcgccatg 63
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 61.9 bits (31), Expect = 2e-008
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 534 ccagctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtc 593
|||| ||||||| ||| | | ||||||||| ||| |||||||| ||| ||||||||
Sbjct: 536 ccagttgcacgggaccggtgtgtactggatttggagacgtccggccgcgcgaagctggtc 477
Query: 594 ggcctggccgggcttcgccatg 615
||||||||||||||||||||||
Sbjct: 476 ggcctggccgggcttcgccatg 455
>gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026K23f, mRNA sequence
Length = 492
Score = 60.0 bits (30), Expect = 9e-008
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 586 agctggtcggcctggccgggcttcgccatg 615
||||||||||||||||||||||||||||||
Sbjct: 487 agctggtcggcctggccgggcttcgccatg 458
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
|||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 245 tcgccgtcgccgtcctcgtactccaccagcaccgcgaagtag 204
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
|||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 234 tcgccgtcgccgtcctcgtactccaccagcaccgcgaagtag 193
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
|||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 194 tcgccgtcgccgtcctcgtactccaccagcaccgcgaagtag 153
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
|||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 362 tcgccgtcgccgtcctcgtactccaccagcaccgcgaagtag 321
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
|||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 125 tcgccgtcgccgtcctcgtactccaccagcaccgcgaagtag 84
>gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C08f, mRNA sequence
Length = 737
Score = 46.1 bits (23), Expect = 0.001
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||| |||| | |||| ||||||||||||| | || |||||| | ||
Sbjct: 484 gagcggtacgtggctccggccttccaattggcggggatgacgttgttgacgacgagcttc 543
Query: 292 ctgccggagcccgacgtgaggcggacggagaaggg 326
||||||||| | || ||||| |||| ||||||||
Sbjct: 544 ctgccggagtcggaggtgagccggaacgagaaggg 578
>gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037A04F1, mRNA sequence
Length = 420
Score = 46.1 bits (23), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 263 cggggatgacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggacggaga 322
|||||||||||| | || |||||| | ||||||||||| | || ||||| |||| ||||
Sbjct: 217 cggggatgacgttgttgacgacgagcttcctgccggagtcggaggtgagccggagcgaga 158
Query: 323 agggccc 329
|||||||
Sbjct: 157 agggccc 151
>gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087A08F1, mRNA sequence
Length = 420
Score = 46.1 bits (23), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 263 cggggatgacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggacggaga 322
|||||||||||| | || |||||| | ||||||||||| | || ||||| |||| ||||
Sbjct: 156 cggggatgacgttgttgacgacgagcttcctgccggagtcggaggtgagccggagcgaga 97
Query: 323 agggccc 329
|||||||
Sbjct: 96 agggccc 90
>gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080H17f, mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.005
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Minus
Query: 586 agctggtcggcctggccgggcttcgccatg 615
|||||||||||||| |||||||||||||||
Sbjct: 485 agctggtcggcctg-ccgggcttcgccatg 457
>gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D09f, mRNA sequence
Length = 864
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 586 agctggtcggcctggccgggcttcgccatg 615
||||||||||||||||||| |||| |||||
Sbjct: 487 agctggtcggcctggccggacttcaccatg 458
>gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014H23f, mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.021
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcacc 477
|||||||||||| ||||||||| |||||||||
Sbjct: 44 tcgccgtcgccgtcctcgtactccaccagcacc 12
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagta 485
|||||||||||| ||||||||| |||||||| || |||||
Sbjct: 640 tcgccgtcgccgtcctcgtactccaccagcacggcgaagta 600
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagta 485
|||||||||||| ||||||||| |||||||| || |||||
Sbjct: 544 tcgccgtcgccgtcctcgtactccaccagcacggcgaagta 504
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagta 485
|||||||||||| ||||||||| |||||||| || |||||
Sbjct: 207 tcgccgtcgccgtcctcgtactccaccagcacggcgaagta 167
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagta 485
|||||||||||| ||||||||| |||||||| || |||||
Sbjct: 494 tcgccgtcgccgtcctcgtactccaccagcacggcgaagta 534
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagta 485
|||||||||||| ||||||||| |||||||| || |||||
Sbjct: 495 tcgccgtcgccgtcctcgtactccaccagcacggcgaagta 535
>gb|AL506472.1|AL506472 AL506472 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03E05T 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.084
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 380 gcatcggcgcccacgccgccgccg 403
||||||||||| ||||||||||||
Sbjct: 261 gcatcggcgccgacgccgccgccg 238
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 582 gcggagctggtcggcctggccgggcttcgccatggc 617
|||||||| ||||||| ||| ||||||||||||||
Sbjct: 233 gcggagcttgtcggccatgccaggcttcgccatggc 198
>gb|BI952042.1|BI952042 HVSMEm0004F02f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0004F02f, mRNA sequence
Length = 937
Score = 40.1 bits (20), Expect = 0.084
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 cggcgggcgggcgcgcgcgc 179
||||||||||||||||||||
Sbjct: 784 cggcgggcgggcgcgcgcgc 803
>gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011O02f, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 68 ggggatgacgttgcgggcgacgagcgtcttgccgga 33
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 468 ggggatgacgttgcgggcgacgagcgtcttgccgga 433
>gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 3', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 484 ggggatgacgttgcgggcgacgagcgtcttgccgga 519
>gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 3', mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 379 ggggatgacgttgcgggcgacgagcgtcttgccgga 414
>gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200008F02F1, mRNA sequence
Length = 481
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 66 ggggatgacgttgcgggcgacgagcgtcttgccgga 31
>gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052C12F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 140 ggggatgacgttgcgggcgacgagcgtcttgccgga 105
>gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200009F02F2, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 58 ggggatgacgttgcgggcgacgagcgtcttgccgga 23
>gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019C04F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 55 ggggatgacgttgcgggcgacgagcgtcttgccgga 20
>gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200042D02F1, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 87 ggggatgacgttgcgggcgacgagcgtcttgccgga 52
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 582 gcggagctggtcggcctggccgggcttcgccatggc 617
|||||||| ||||||| ||| ||||||||||||||
Sbjct: 227 gcggagcttgtcggccatgccaggcttcgccatggc 192
>gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
3-PRIME, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 497 ggggatgacgttgcgggcgacgagcgtcttgccgga 532
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 40.1 bits (20), Expect = 0.084
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcaccgccaagtagtt 488
|||||||||||| ||||||||| ||||| | ||||| ||||||
Sbjct: 328 tcgccgtcgccgtcctcgtactccaccaggatcgccaggtagtt 285
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 288 ggggatgacgttgcgggcgacgagcgtcttgccgga 253
>gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. vulgare cDNA clone HF11E17
5-PRIME, mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.084
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 445 tcgccgtcgccggactcgtactcgaccagcac 476
|||||||||||| ||||||||| ||||||||
Sbjct: 45 tcgccgtcgccgtcctcgtactccaccagcac 14
>gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M15
3-PRIME, mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 403 ggggatgacgttgcgggcgacgagcgtcttgccgga 438
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 254 ggggatgacgttgcgggcgacgagcgtcttgccgga 289
>gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. vulgare cDNA clone HV12M19
3-PRIME, mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 406 ggggatgacgttgcgggcgacgagcgtcttgccgga 441
>gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
3-PRIME, mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.084
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 264 ggggatgacgtcgctggcgacgaccgtcctgccgga 299
||||||||||| || |||||||| |||| |||||||
Sbjct: 424 ggggatgacgttgcgggcgacgagcgtcttgccgga 459
>gb|CB883284.1|CB883284 HQ01L24w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01L24
3-PRIME, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.084
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 380 gcatcggcgcccacgccgccgccg 403
||||||||||| ||||||||||||
Sbjct: 411 gcatcggcgccgacgccgccgccg 388
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 459 ctcgtactcgaccagcaccgcca 481
||||||||||| |||||||||||
Sbjct: 635 ctcgtactcgatcagcaccgcca 613
>gb|BE213713.2|BE213713 HV_CEb0001B04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001B04f, mRNA sequence
Length = 984
Score = 38.2 bits (19), Expect = 0.33
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 384 cggcgcccacgccgccgccggaccggc 410
||||||||||||||||| |||| ||||
Sbjct: 182 cggcgcccacgccgccggcggagcggc 156
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,295
Number of Sequences: 312970
Number of extensions: 130295
Number of successful extensions: 37696
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37601
Number of HSP's gapped (non-prelim): 92
length of query: 621
length of database: 175,134,539
effective HSP length: 19
effective length of query: 602
effective length of database: 169,188,109
effective search space: 101851241618
effective search space used: 101851241618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)