BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647917.2.1
(3189 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833368.1|AV833368 AV833368 K. Sato unpublished cDNA li... 513 e-143
gb|CA029152.1|CA029152 HZ64F20r HZ Hordeum vulgare subsp. v... 410 e-112
gb|CB883650.1|CB883650 HQ02O02w HQ Hordeum vulgare subsp. v... 180 2e-043
gb|AV919712.1|AV919712 AV919712 K. Sato unpublished cDNA li... 111 1e-022
gb|AV922267.1|AV922267 AV922267 K. Sato unpublished cDNA li... 107 2e-021
gb|BU966937.1|BU966937 HB02N03r BC Hordeum vulgare subsp. v... 58 2e-006
gb|BM372335.2|BM372335 EBro03_SQ004_K20_R root, 3 week, wat... 46 0.007
gb|BG365450.1|BG365450 HVSMEi0002L18f Hordeum vulgare 20 DA... 42 0.11
gb|BG367532.1|BG367532 HVSMEi0012J14f Hordeum vulgare 20 DA... 42 0.11
gb|BF065892.2|BF065892 HV_CEb0014E12f Hordeum vulgare seedl... 42 0.11
gb|BE216031.3|BE216031 HV_CEb0009C21f Hordeum vulgare seedl... 42 0.11
gb|AV924687.1|AV924687 AV924687 K. Sato unpublished cDNA li... 42 0.11
gb|AV924695.1|AV924695 AV924695 K. Sato unpublished cDNA li... 42 0.11
gb|AV924696.1|AV924696 AV924696 K. Sato unpublished cDNA li... 42 0.11
gb|AV929785.1|AV929785 AV929785 K. Sato unpublished cDNA li... 42 0.11
gb|AV929791.1|AV929791 AV929791 K. Sato unpublished cDNA li... 42 0.11
gb|BJ462089.1|BJ462089 BJ462089 K. Sato unpublished cDNA li... 42 0.11
gb|BQ458866.1|BQ458866 HA04A04r HA Hordeum vulgare subsp. v... 42 0.11
gb|BU987483.1|BU987483 HF14O02r HF Hordeum vulgare subsp. v... 42 0.11
gb|CA018291.1|CA018291 HV08D03r HV Hordeum vulgare subsp. v... 42 0.11
gb|CA032350.1|CA032350 HX12M04r HX Hordeum vulgare subsp. v... 42 0.11
gb|CD663795.1|CD663795 UCRHV18_06cf11_b1 Drought-stressed D... 42 0.11
gb|AV836846.1|AV836846 AV836846 K. Sato unpublished cDNA li... 40 0.44
gb|BF259960.2|BF259960 HVSMEf0020L17f Hordeum vulgare seedl... 40 0.44
gb|BF267837.2|BF267837 HV_CEa0019A14f Hordeum vulgare seedl... 40 0.44
gb|BJ468873.1|BJ468873 BJ468873 K. Sato unpublished cDNA li... 40 0.44
gb|BI780740.2|BI780740 EBes01_SQ002_A07_R embryo sac, 4-6 D... 40 0.44
gb|BQ767312.1|BQ767312 EBro08_SQ008_E18_R root, 3 week, dro... 40 0.44
gb|BU966755.1|BU966755 HB02E05r BC Hordeum vulgare subsp. v... 40 0.44
gb|BU967283.1|BU967283 HB03N04r BC Hordeum vulgare subsp. v... 40 0.44
>gb|AV833368.1|AV833368 AV833368 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags7e10, mRNA sequence
Length = 523
Score = 513 bits (259), Expect = e-143
Identities = 458/523 (87%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 742 tcgcattctgacacacttacatgccacagaagcaatcttcttgagggcctcaaggtctga 801
||||||||| |||||||| |||||||||| ||||||||||| | ||||| |||| ||
Sbjct: 523 tcgcattcttacacacttgcatgccacagctgcaatcttcttcaaagcctccgggtcaga 464
Query: 802 gggaggagataagactggatcaaggatggcaaaaatgtcccctgctttgatcagaggtac 861
||||||||||||| |||||||||||||| || |||||||||| |||||||||| || |
Sbjct: 463 gggaggagataaggctggatcaaggatgccagaaatgtccccagctttgatcaacggggc 404
Query: 862 tgcccattcaacaatgttcccctcctcgaactgcatgtcgatcgctttcctgccacttag 921
||||||||||||||| || |||||||| | ||||||||| || |||||||||||||||||
Sbjct: 403 tgcccattcaacaatattgccctcctcaagctgcatgtcaatggctttcctgccacttag 344
Query: 922 tatctccaggagaacaaccccgaagctgtagacatcagattttgtagtcaagtagtggag 981
|| || || |||||||| || |||||||||||||| || ||||| |||||||| |||||
Sbjct: 343 aatttctagaagaacaactccaaagctgtagacatcggactttgtcgtcaagtaatggag 284
Query: 982 acggtagtactcagggtcaaggtagccaagagtccctgctggcagctcagacagtggggt 1041
|||||||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 283 acggtagtactcagggtcaaggtacccaagtgtccctgccggcagctctgagagtggtgt 224
Query: 1042 accgctatctgcaggacccaatatagacagaccaaagtcagcaacacgggcattgtgatc 1101
||||||||| |||| |||| |||||| ||||||||||| |||||||| |||||||||||
Sbjct: 223 gccgctatctacagggcccattatagatagaccaaagtcggcaacacgtgcattgtgatc 164
Query: 1102 ctcatcaatcaatatgtttgacgacttgatgtcccggtgaattacaggagggcaagcata 1161
||||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 163 ctcatcaatcaatatgtttgaagacttaatgtctcggtgaattactggtgggcaagcata 104
Query: 1162 gccatgcaagtactcaattcccctagcagcctgtacagcaatggtgacccgccttgccca 1221
||||||||| ||||| ||||| | ||||||||| ||||||||||| |||||||| | |||
Sbjct: 103 gccatgcaaatactctattccacgagcagcctggacagcaatggtaacccgcctggtcca 44
Query: 1222 gtttagtcgctttttcaagtttggat-ccttgccatgcagatg 1263
||| ||| |||| |||||||||| || ||||||||||||||||
Sbjct: 43 gttcagttgcttcttcaagtttgaatnccttgccatgcagatg 1
>gb|CA029152.1|CA029152 HZ64F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64F20
5-PRIME, mRNA sequence
Length = 364
Score = 410 bits (207), Expect = e-112
Identities = 319/355 (89%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 934 aacaaccccgaagctgtagacatcagattttgtagtcaagtagtggagacggtagtactc 993
|||||| || |||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct: 364 aacaactccaaagctgtagacatcggactttgtcgtcaagtaatggagacggtagtactc 305
Query: 994 agggtcaaggtagccaagagtccctgctggcagctcagacagtggggtaccgctatctgc 1053
|||||||||||| ||||| |||||||| |||||||| || ||||| || ||||||||| |
Sbjct: 304 agggtcaaggtacccaagtgtccctgccggcagctctgagagtggtgtgccgctatctac 245
Query: 1054 aggacccaatatagacagaccaaagtcagcaacacgggcattgtgatcctcatcaatcaa 1113
||| |||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 244 agggcccattatagatagaccaaagtcggcaacacgtgcattgtgatcctcatcaatcaa 185
Query: 1114 tatgtttgacgacttgatgtcccggtgaattacaggagggcaagcatagccatgcaagta 1173
||||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 184 tatgtttgaagacttaatgtctcggtgaattactggtgggcaagcatagccatgcaaata 125
Query: 1174 ctcaattcccctagcagcctgtacagcaatggtgacccgccttgcccagtttagtcgctt 1233
||| ||||| | ||||||||| ||||||||||| |||||||| | |||||| ||| ||||
Sbjct: 124 ctctattccacgagcagcctggacagcaatggt-acccgcctggtccagttcagttgctt 66
Query: 1234 tttcaagtttggatccttgccatgcagatgctggtacagggatccatgagccatg 1288
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cttcaagtttgaatccttgccatgcagatgctggtacagggatccatgagccatg 11
>gb|CB883650.1|CB883650 HQ02O02w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02O02
3-PRIME, mRNA sequence
Length = 632
Score = 180 bits (91), Expect = 2e-043
Identities = 217/259 (83%)
Strand = Plus / Minus
Query: 2717 ggcaccccgctcttgacataggagttgctaccccagcagtatggctgcctggtgtcgagc 2776
||||||||| |||||||||| |||||||| ||||||||||| ||||| ||||| || |||
Sbjct: 620 ggcaccccgatcttgacatatgagttgctcccccagcagtaaggctgactggtatccagc 561
Query: 2777 aggaggccacacacgaacccatcccctgccgtgaggccaaggaaagggatgttgggtggt 2836
||||| || ||| ||||||||||||| || |||||||| ||||| ||||| || | ||
Sbjct: 560 aggagaccgcacgcgaacccatcccccgcggtgaggccgaggaaggggatcctgagggga 501
Query: 2837 gcgccgtacaggacagatgcatcagcaccgaagcaggcgacgaggtgggagccgtcggag 2896
|| ||||| | |||||| || || || ||| |||||||||| | |||||||||||| |||
Sbjct: 500 gcaccgtagacgacagaggcgtccgcgccggagcaggcgaccaagtgggagccgtccgag 441
Query: 2897 ttgaggccacagaacaccggaccatcctccccataggacaccgcaatggacgacatggag 2956
||||||| |||||||||||||| ||||| || |||||||||| ||||| |||||||
Sbjct: 440 ctgaggccgcagaacaccggaccgtcctcgccgtaggacaccgagatggatcccatggag 381
Query: 2957 ccaaggccacaggcccagc 2975
|| |||||| |||||||||
Sbjct: 380 ccgaggccataggcccagc 362
>gb|AV919712.1|AV919712 AV919712 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7e10 3', mRNA sequence
Length = 460
Score = 111 bits (56), Expect = 1e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 322 atttcttcagaagttgtgctgcaagtacaggttctcttgtggtgaagctggagcgatttc 381
||||| |||||||||||||||||||||||||||||| ||||| || || || | || ||
Sbjct: 333 atttcatcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctc 392
Query: 382 ttcctccagtgaccgcagtccgtcacctatgctgctcccgacgttcctgccgtctgtgg 440
|| ||||||||||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 393 ttnctccagtgaccgcagaccatctcctatgctgctcccgacattcctcccatctgtgg 451
>gb|AV922267.1|AV922267 AV922267 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags3f22 3', mRNA sequence
Length = 472
Score = 107 bits (54), Expect = 2e-021
Identities = 90/102 (88%)
Strand = Plus / Plus
Query: 322 atttcttcagaagttgtgctgcaagtacaggttctcttgtggtgaagctggagcgatttc 381
||||| |||||||||||||||||||||||||||||| ||||| || || || | || ||
Sbjct: 367 atttcatcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctc 426
Query: 382 ttcctccagtgaccgcagtccgtcacctatgctgctcccgac 423
|||||||||||||||||| || || |||||||||||||||||
Sbjct: 427 ttcctccagtgaccgcagaccatctcctatgctgctcccgac 468
>gb|BU966937.1|BU966937 HB02N03r BC Hordeum vulgare subsp. vulgare cDNA clone HB02N03
5-PRIME, mRNA sequence
Length = 413
Score = 58.0 bits (29), Expect = 2e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
|||||||||||||||||||||||||||||
Sbjct: 98 aggagaacaaccccgaagctgtagacatc 70
>gb|BM372335.2|BM372335 EBro03_SQ004_K20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_K20 5', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 988 gtactcagggtcaaggtagccaagagt 1014
|||||||||||| ||||||||||||||
Sbjct: 408 gtactcagggtcgaggtagccaagagt 382
>gb|BG365450.1|BG365450 HVSMEi0002L18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002L18f, mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 308 gatggcaccacctgctgcatc 328
>gb|BG367532.1|BG367532 HVSMEi0012J14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012J14f, mRNA sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 271 gatggcaccacctgctgcatc 291
>gb|BF065892.2|BF065892 HV_CEb0014E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014E12f, mRNA sequence
Length = 932
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 297 gatggcaccacctgctgcatc 317
>gb|BE216031.3|BE216031 HV_CEb0009C21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009C21f, mRNA sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 940 cccgaagctgtagacatcaga 960
|||||||||||||||||||||
Sbjct: 620 cccgaagctgtagacatcaga 600
>gb|AV924687.1|AV924687 AV924687 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16j02 5', mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 286 gatggcaccacctgctgcatc 306
>gb|AV924695.1|AV924695 AV924695 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16j13 5', mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 260 gatggcaccacctgctgcatc 280
>gb|AV924696.1|AV924696 AV924696 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16j14 5', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 260 gatggcaccacctgctgcatc 280
>gb|AV929785.1|AV929785 AV929785 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16j02 3', mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 532 gatggcaccacctgctgcatc 512
>gb|AV929791.1|AV929791 AV929791 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16j13 3', mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 525 gatggcaccacctgctgcatc 505
>gb|BJ462089.1|BJ462089 BJ462089 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21n09 3', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 926 tccaggagaacaaccccgaagctgtagacatca 958
||||| ||||| || ||||||||||||||||||
Sbjct: 458 tccagaagaaccacgccgaagctgtagacatca 490
>gb|BQ458866.1|BQ458866 HA04A04r HA Hordeum vulgare subsp. vulgare cDNA clone HA04A04
5-PRIME, mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 282 gatggcaccacctgctgcatc 302
>gb|BU987483.1|BU987483 HF14O02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14O02
5-PRIME, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 194 gatggcaccacctgctgcatc 214
>gb|CA018291.1|CA018291 HV08D03r HV Hordeum vulgare subsp. vulgare cDNA clone HV08D03
5-PRIME, mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 284 gatggcaccacctgctgcatc 304
>gb|CA032350.1|CA032350 HX12M04r HX Hordeum vulgare subsp. vulgare cDNA clone HX12M04
5-PRIME, mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcatc 2344
|||||||||||||||||||||
Sbjct: 298 gatggcaccacctgctgcatc 318
>gb|CD663795.1|CD663795 UCRHV18_06cf11_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cf11, mRNA sequence
Length = 799
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 940 cccgaagctgtagacatcaga 960
|||||||||||||||||||||
Sbjct: 654 cccgaagctgtagacatcaga 674
>gb|AV836846.1|AV836846 AV836846 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd27k16, mRNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 607 cggtagtactcagggtcaag 626
>gb|BF259960.2|BF259960 HVSMEf0020L17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020L17f, mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 941 ccgaagctgtagacatcaga 960
||||||||||||||||||||
Sbjct: 61 ccgaagctgtagacatcaga 42
>gb|BF267837.2|BF267837 HV_CEa0019A14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0019A14f, mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2324 gatggcaccacctgctgcat 2343
||||||||||||||||||||
Sbjct: 307 gatggcaccacctgctgcat 326
>gb|BJ468873.1|BJ468873 BJ468873 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd27k16 5', mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 487 cggtagtactcagggtcaag 468
>gb|BI780740.2|BI780740 EBes01_SQ002_A07_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_A07 5', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 192 cggtagtactcagggtcaag 173
>gb|BQ767312.1|BQ767312 EBro08_SQ008_E18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_E18 5', mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 28 cggtagtactcagggtcaag 9
>gb|BU966755.1|BU966755 HB02E05r BC Hordeum vulgare subsp. vulgare cDNA clone HB02E05
5-PRIME, mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 218 cggtagtactcagggtcaag 199
>gb|BU967283.1|BU967283 HB03N04r BC Hordeum vulgare subsp. vulgare cDNA clone HB03N04
5-PRIME, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 983 cggtagtactcagggtcaag 1002
||||||||||||||||||||
Sbjct: 219 cggtagtactcagggtcaag 200
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,058
Number of Sequences: 312970
Number of extensions: 295058
Number of successful extensions: 72467
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72413
Number of HSP's gapped (non-prelim): 50
length of query: 3189
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3169
effective length of database: 168,875,139
effective search space: 535165315491
effective search space used: 535165315491
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)