BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647051.2.1
(627 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX662506.1|CX662506 EST 322 Expressed sequences from Bar... 208 2e-052
gb|CX662646.1|CX662646 EST 477 Expressed sequences from Bar... 208 2e-052
gb|BF266997.3|BF266997 HV_CEa0016K10f Hordeum vulgare seedl... 200 4e-050
gb|BU995376.1|BU995376 HM10B01r HM Hordeum vulgare subsp. v... 200 4e-050
gb|CB881502.1|CB881502 HM10A02w HM Hordeum vulgare subsp. v... 200 4e-050
gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isom... 200 4e-050
gb|BI957123.1|BI957123 HVSMEn0007J13f Hordeum vulgare rachi... 186 6e-046
gb|BI956899.1|BI956899 HVSMEn0005O19f Hordeum vulgare rachi... 172 9e-042
gb|BE195609.3|BE195609 HVSMEh0089O15f Hordeum vulgare 5-45 ... 161 3e-038
gb|CA024561.1|CA024561 HZ49K12r HZ Hordeum vulgare subsp. v... 141 3e-032
gb|BQ657088.1|BQ657088 HA09L14u HA Hordeum vulgare subsp. v... 129 1e-028
gb|BG369915.2|BG369915 HVSMEi0026I15f Hordeum vulgare 20 DA... 46 0.001
gb|CA012555.1|CA012555 HT05M03r HT Hordeum vulgare subsp. v... 44 0.005
gb|BI950619.1|BI950619 HVSMEl0021L16f Hordeum vulgare spike... 42 0.021
gb|AV930061.1|AV930061 AV930061 K. Sato unpublished cDNA li... 40 0.085
gb|CA001843.1|CA001843 HS05M02r HS Hordeum vulgare subsp. v... 40 0.085
gb|CA002459.1|CA002459 HS07J05r HS Hordeum vulgare subsp. v... 40 0.085
gb|CA007436.1|CA007436 HU07P07r HU Hordeum vulgare subsp. v... 40 0.085
gb|CA025523.1|CA025523 HZ52G12r HZ Hordeum vulgare subsp. v... 40 0.085
gb|CB882290.1|CB882290 HL01H06w HL Hordeum vulgare subsp. v... 40 0.085
gb|CB882803.1|CB882803 HL02O05w HL Hordeum vulgare subsp. v... 40 0.085
gb|BF631191.2|BF631191 HVSMEb0015D17f Hordeum vulgare seedl... 38 0.34
gb|BE060373.2|BE060373 HVSMEg0012C05f Hordeum vulgare pre-a... 38 0.34
gb|BG365241.1|BG365241 HVSMEi0001P04f Hordeum vulgare 20 DA... 38 0.34
gb|BE216869.1|BE216869 HV_CEb0011N24f Hordeum vulgare seedl... 38 0.34
gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedl... 38 0.34
gb|BF256721.3|BF256721 HVSMEf0010N03f Hordeum vulgare seedl... 38 0.34
gb|AV914069.1|AV914069 AV914069 K. Sato unpublished cDNA li... 38 0.34
gb|AV918699.1|AV918699 AV918699 K. Sato unpublished cDNA li... 38 0.34
gb|AV919107.1|AV919107 AV919107 K. Sato unpublished cDNA li... 38 0.34
gb|BJ549992.1|BJ549992 BJ549992 K. Sato unpublished cDNA li... 38 0.34
gb|CD662480.1|CD662480 UCRHV18_01cg02_b1 Drought-stressed D... 38 0.34
>gb|CX662506.1|CX662506 EST 322 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P322 5', mRNA sequence
Length = 513
Score = 208 bits (105), Expect = 2e-052
Identities = 165/185 (89%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 140 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 199
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| || |||
Sbjct: 200 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgcccggctc 259
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 260 tgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctc 319
Query: 230 agcct 234
|||||
Sbjct: 320 agcct 324
>gb|CX662646.1|CX662646 EST 477 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P477 5', mRNA sequence
Length = 513
Score = 208 bits (105), Expect = 2e-052
Identities = 165/185 (89%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 140 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 199
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| || |||
Sbjct: 200 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgcccggctc 259
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 260 tgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctc 319
Query: 230 agcct 234
|||||
Sbjct: 320 agcct 324
>gb|BF266997.3|BF266997 HV_CEa0016K10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016K10f, mRNA sequence
Length = 751
Score = 200 bits (101), Expect = 4e-050
Identities = 164/185 (88%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 369 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 428
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||
Sbjct: 429 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctc 488
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 489 tgcgaggccgtgctggagtccatcatcggcgagcacggtgtgtcgccggcggccaagctc 548
Query: 230 agcct 234
|||||
Sbjct: 549 agcct 553
>gb|BU995376.1|BU995376 HM10B01r HM Hordeum vulgare subsp. vulgare cDNA clone HM10B01
5-PRIME, mRNA sequence
Length = 602
Score = 200 bits (101), Expect = 4e-050
Identities = 164/185 (88%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 273 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 332
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||
Sbjct: 333 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctc 392
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 393 tgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctc 452
Query: 230 agcct 234
|||||
Sbjct: 453 agcct 457
>gb|CB881502.1|CB881502 HM10A02w HM Hordeum vulgare subsp. vulgare cDNA clone HM10A02
3-PRIME, mRNA sequence
Length = 630
Score = 200 bits (101), Expect = 4e-050
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 440 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 381
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||
Sbjct: 380 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctc 321
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 320 tgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctc 261
Query: 230 agcct 234
|||||
Sbjct: 260 agcct 256
>gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isomerase (CHI) gene,
complete cds
Length = 11475
Score = 200 bits (101), Expect = 4e-050
Identities = 164/185 (88%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 7563 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 7622
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctc 169
||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||
Sbjct: 7623 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctc 7682
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 7683 tgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctc 7742
Query: 230 agcct 234
|||||
Sbjct: 7743 agcct 7747
>gb|BI957123.1|BI957123 HVSMEn0007J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007J13f, mRNA sequence
Length = 592
Score = 186 bits (94), Expect = 6e-046
Identities = 151/170 (88%)
Strand = Plus / Minus
Query: 59 ggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaag 118
||||||||||| || ||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 449 ggcgcctccatacttttcacgcactcccccgccggcgtgctcaccgtcgccttctccaag 390
Query: 119 gactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggcc 178
|||||||||||||||| | ||||||||||||| ||||||||| | ||||||||||||
Sbjct: 389 gactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctctgcgaggcc 330
Query: 179 gtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagct 228
|||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 329 gtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagct 280
>gb|BI956899.1|BI956899 HVSMEn0005O19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005O19f, mRNA sequence
Length = 885
Score = 172 bits (87), Expect = 9e-042
Identities = 140/158 (88%)
Strand = Plus / Plus
Query: 59 ggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaag 118
||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 183 ggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgccttctccaag 242
Query: 119 gactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggcc 178
|||||||||||||||| | ||||||||||||| ||| | ||| | ||||||||||||
Sbjct: 243 gactcgtcggtgccggagtccggcggcgtggccatcnaaaacgccaggctctgcgaggcc 302
Query: 179 gtgctggagtccatcatcggggagcgcggcgtgtcgcc 216
|||||||||||||||||||| |||| ||| ||||||||
Sbjct: 303 gtgctggagtccatcatcggcgagcacggggtgtcgcc 340
>gb|BE195609.3|BE195609 HVSMEh0089O15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089O15f, mRNA sequence
Length = 391
Score = 161 bits (81), Expect = 3e-038
Identities = 123/137 (89%)
Strand = Plus / Plus
Query: 98 ctcaccgtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgag 157
||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 2 ctcaccgtcgccttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgag 61
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
||| | |||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 62 aacgccaggctctgcgaggccgtgctggagtccatcatcggcgagcacggggtgtcgccg 121
Query: 218 gccgcgaagctgagcct 234
|| || ||||| |||||
Sbjct: 122 gcggccaagctcagcct 138
>gb|CA024561.1|CA024561 HZ49K12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49K12
5-PRIME, mRNA sequence
Length = 499
Score = 141 bits (71), Expect = 3e-032
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 50 ttcgcgccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgcc 109
||||| || ||||||||||| |||||||||||||| ||||||| || ||||||||||||
Sbjct: 374 ttcgcccccggcgcctccatactcttcacgcactcccccgccggcgtgctcaccgtcgcc 433
Query: 110 ttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaac 160
||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 434 ttctccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaac 484
>gb|BQ657088.1|BQ657088 HA09L14u HA Hordeum vulgare subsp. vulgare cDNA clone HA09L14
3-PRIME, mRNA sequence
Length = 377
Score = 129 bits (65), Expect = 1e-028
Identities = 107/121 (88%)
Strand = Plus / Minus
Query: 114 ccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcg 173
||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||
Sbjct: 377 ccaaggactcgtcggtgccggagtccggcggcgtggccatcgagaacgccaggctctgcg 318
Query: 174 aggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcc 233
||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||| ||||
Sbjct: 317 aggccgtgctggagtccatcatcggcgagcacggggtgtcgccggcggccaagctcagcc 258
Query: 234 t 234
|
Sbjct: 257 t 257
>gb|BG369915.2|BG369915 HVSMEi0026I15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026I15f, mRNA sequence
Length = 492
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 328 ggagcgggcgggcgggcgagcga 350
|||||||||||||||||||||||
Sbjct: 31 ggagcgggcgggcgggcgagcga 9
>gb|CA012555.1|CA012555 HT05M03r HT Hordeum vulgare subsp. vulgare cDNA clone HT05M03
5-PRIME, mRNA sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 227 ctgagcctcgccgcgagggtgt 248
||||||||||||||||||||||
Sbjct: 99 ctgagcctcgccgcgagggtgt 120
>gb|BI950619.1|BI950619 HVSMEl0021L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021L16f, mRNA sequence
Length = 890
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 322 aggcgaggagcgggcgggcgg 342
|||||||||||||||||||||
Sbjct: 809 aggcgaggagcgggcgggcgg 829
>gb|AV930061.1|AV930061 AV930061 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l03 3', mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 265 ggagaccgccgcgcccgccg 284
||||||||||||||||||||
Sbjct: 435 ggagaccgccgcgcccgccg 454
>gb|CA001843.1|CA001843 HS05M02r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M02
5-PRIME, mRNA sequence
Length = 149
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 91 gcgggcgggcgggcgagcga 110
>gb|CA002459.1|CA002459 HS07J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS07J05
5-PRIME, mRNA sequence
Length = 405
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 103 gcgggcgggcgggcgagcga 122
>gb|CA007436.1|CA007436 HU07P07r HU Hordeum vulgare subsp. vulgare cDNA clone HU07P07
5-PRIME, mRNA sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 100 gcgggcgggcgggcgagcga 119
>gb|CA025523.1|CA025523 HZ52G12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52G12
5-PRIME, mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 54 gcgggcgggcgggcgagcga 73
>gb|CB882290.1|CB882290 HL01H06w HL Hordeum vulgare subsp. vulgare cDNA clone HL01H06
3-PRIME, mRNA sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 179 gcgggcgggcgggcgagcga 198
>gb|CB882803.1|CB882803 HL02O05w HL Hordeum vulgare subsp. vulgare cDNA clone HL02O05
3-PRIME, mRNA sequence
Length = 383
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 gcgggcgggcgggcgagcga 350
||||||||||||||||||||
Sbjct: 226 gcgggcgggcgggcgagcga 245
>gb|BF631191.2|BF631191 HVSMEb0015D17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015D17f, mRNA sequence
Length = 737
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 215 gaggggcgggcgggcgggcgggcgaac 189
>gb|BE060373.2|BE060373 HVSMEg0012C05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012C05f, mRNA sequence
Length = 803
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 331 gcgggcgggcgggcgagcg 349
|||||||||||||||||||
Sbjct: 91 gcgggcgggcgggcgagcg 73
>gb|BG365241.1|BG365241 HVSMEi0001P04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001P04f, mRNA sequence
Length = 784
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 320 gaggggcgggcgggcgggcgggcgaac 294
>gb|BE216869.1|BE216869 HV_CEb0011N24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011N24f, mRNA sequence
Length = 898
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 321 gaggcgaggagcgggcggg 339
|||||||||||||||||||
Sbjct: 723 gaggcgaggagcgggcggg 741
>gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004G02f, mRNA sequence
Length = 869
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 133 ggcggccggcggcgtggcgatcg 155
||||| |||||||||||||||||
Sbjct: 277 ggcgggcggcggcgtggcgatcg 255
>gb|BF256721.3|BF256721 HVSMEf0010N03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010N03f, mRNA sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 473 gaggggcgggcgggcgggcgggcgaac 447
>gb|AV914069.1|AV914069 AV914069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4i22 5', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 412 gaggggcgggcgggcgggcgggcgaac 386
>gb|AV918699.1|AV918699 AV918699 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o23 3', mRNA sequence
Length = 697
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 283 gaggggcgggcgggcgggcgggcgaac 309
>gb|AV919107.1|AV919107 AV919107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4i22 3', mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 217 gaggggcgggcgggcgggcgggcgaac 243
>gb|BJ549992.1|BJ549992 BJ549992 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25l09 3', mRNA sequence
Length = 303
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 197 gaggggcgggcgggcgggcgggcgaac 223
>gb|CD662480.1|CD662480 UCRHV18_01cg02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01cg02, mRNA sequence
Length = 297
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcgagcgaac 352
|||| ||||||||||||||| ||||||
Sbjct: 222 gaggggcgggcgggcgggcgggcgaac 248
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,217
Number of Sequences: 312970
Number of extensions: 100217
Number of successful extensions: 30186
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30099
Number of HSP's gapped (non-prelim): 62
length of query: 627
length of database: 175,134,539
effective HSP length: 19
effective length of query: 608
effective length of database: 169,188,109
effective search space: 102866370272
effective search space used: 102866370272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)