BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 309 7e-083
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 309 7e-083
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 309 7e-083
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 309 7e-083
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 309 7e-083
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 309 7e-083
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 309 7e-083
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 309 7e-083
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 305 1e-081
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 301 2e-080
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 297 3e-079
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 289 7e-077
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 283 4e-075
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 281 2e-074
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 278 2e-073
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 268 2e-070
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 238 2e-061
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 212 1e-053
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 204 3e-051
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 202 1e-050
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 196 7e-049
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 196 7e-049
gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike... 194 3e-048
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 178 2e-043
gb|AL509608.1|AL509608 AL509608 Hordeum vulgare Barke devel... 151 4e-035
gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, ... 135 2e-030
gb|BU987584.1|BU987584 HF15C17r HF Hordeum vulgare subsp. v... 92 3e-017
gb|BU987936.1|BU987936 HF16D03r HF Hordeum vulgare subsp. v... 92 3e-017
gb|BU988620.1|BU988620 HF18D01r HF Hordeum vulgare subsp. v... 92 3e-017
gb|BQ660646.1|BQ660646 HI04K24u HI Hordeum vulgare subsp. v... 78 5e-013
gb|BQ756100.1|BQ756100 EBem05_SQ001_L15_R embryo, 14 DPA, n... 72 3e-011
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 66 2e-009
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 66 2e-009
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 66 2e-009
gb|BU971131.1|BU971131 HB16L05r BC Hordeum vulgare subsp. v... 64 7e-009
gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, n... 60 1e-007
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 54 7e-006
gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Li... 54 7e-006
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 54 7e-006
gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA li... 54 7e-006
gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA li... 54 7e-006
gb|BU980007.1|BU980007 HA18D03r HA Hordeum vulgare subsp. v... 54 7e-006
gb|CA022013.1|CA022013 HZ41O10r HZ Hordeum vulgare subsp. v... 54 7e-006
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 54 7e-006
gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. v... 54 7e-006
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 54 7e-006
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 54 7e-006
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 54 7e-006
gb|CB859855.1|CB859855 HI11N03w HI Hordeum vulgare subsp. v... 54 7e-006
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 54 7e-006
gb|BG299400.1|BG299400 HVSMEa0019M24f Hordeum vulgare seedl... 52 3e-005
gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA li... 52 3e-005
gb|AV910093.1|AV910093 AV910093 K. Sato unpublished cDNA li... 52 3e-005
gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA li... 52 3e-005
gb|AV912272.1|AV912272 AV912272 K. Sato unpublished cDNA li... 52 3e-005
gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA li... 52 3e-005
gb|AV925157.1|AV925157 AV925157 K. Sato unpublished cDNA li... 52 3e-005
gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ448110.1|BJ448110 BJ448110 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ455845.1|BJ455845 BJ455845 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ459642.1|BJ459642 BJ459642 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA li... 52 3e-005
gb|CD662528.1|CD662528 UCRHV18_02ba05_b1 Drought-stressed D... 52 3e-005
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 50 1e-004
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 50 1e-004
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 50 1e-004
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 50 1e-004
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 50 1e-004
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 50 1e-004
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 50 1e-004
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 50 1e-004
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 50 1e-004
gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. v... 50 1e-004
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 50 1e-004
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 48 4e-004
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 48 4e-004
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 48 4e-004
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 48 4e-004
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 48 4e-004
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 48 4e-004
gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike... 46 0.002
gb|BU972193.1|BU972193 HB20O14r BC Hordeum vulgare subsp. v... 46 0.002
gb|AV925156.1|AV925156 AV925156 K. Sato unpublished cDNA li... 44 0.006
gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA li... 44 0.006
gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedl... 42 0.026
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 42 0.026
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 40 0.10
gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots... 40 0.10
gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedl... 40 0.10
gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. v... 40 0.10
gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, n... 40 0.10
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 40 0.10
gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. v... 40 0.10
gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. v... 40 0.10
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 38 0.40
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 38 0.40
gb|AJ436541.1|AJ436541 AJ436541 S00002 Hordeum vulgare subs... 38 0.40
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 38 0.40
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 38 0.40
gb|BJ454113.1|BJ454113 BJ454113 K. Sato unpublished cDNA li... 38 0.40
gb|BJ461647.1|BJ461647 BJ461647 K. Sato unpublished cDNA li... 38 0.40
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 38 0.40
gb|BQ662087.1|BQ662087 HR01H24u HR Hordeum vulgare subsp. v... 38 0.40
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 38 0.40
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 38 0.40
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 38 0.40
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 279 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 338
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 339 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 398
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 399 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 458
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 459 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 518
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 519 cttccagtgccc 530
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctc 58
|||||||||||||| |||||||| ||||| ||||
Sbjct: 127 ccgtacgtgccaccatacgtcccaccgacacctc 160
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Minus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 517 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 458
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 457 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 398
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 397 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 338
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 337 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 278
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 277 cttccagtgccc 266
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 88 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 147
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 148 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 207
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 208 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 267
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 268 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 327
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 328 cttccagtgccc 339
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 88 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 147
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 148 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 207
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 208 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 267
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 268 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 327
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 328 cttccagtgccc 339
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 228 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 287
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 288 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 347
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 348 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 407
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 408 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 467
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 468 cttccagtgccc 479
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctc 58
|||||||||||||| |||||||| ||||| ||||
Sbjct: 76 ccgtacgtgccaccatacgtcccaccgacacctc 109
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 154 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 213
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 214 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 273
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 274 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 333
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 334 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 393
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 394 cttccagtgccc 405
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 310 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 369
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 370 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 429
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 430 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 489
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 490 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 549
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 550 cttccagtgccc 561
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 309 bits (156), Expect = 7e-083
Identities = 228/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 145 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 204
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 205 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 264
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 265 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 324
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 325 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 384
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 385 cttccagtgccc 396
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 305 bits (154), Expect = 1e-081
Identities = 214/234 (91%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 320 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 379
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 380 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 439
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 440 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 499
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgcc 347
|||||||||||| | |||||| |||||||||||||||||||||||| ||||
Sbjct: 500 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcc 553
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctc 58
|||||||||||||| |||||||| ||||| ||||
Sbjct: 168 ccgtacgtgccaccatacgtcccaccgacacctc 201
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 301 bits (152), Expect = 2e-080
Identities = 227/252 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 113 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 172
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || |||||||||||||||||||||||||| |||
Sbjct: 173 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggcggc 232
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 233 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 292
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcggg 353
|||||||||||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 293 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacgg 352
Query: 354 cttccagtgccc 365
||||||||||||
Sbjct: 353 cttccagtgccc 364
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 297 bits (150), Expect = 3e-079
Identities = 209/229 (91%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 425 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 484
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 485 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 544
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 545 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 604
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcac 342
|||||||||||| | |||||| ||||||||||||||||| ||||||
Sbjct: 605 catctacctcccggtggcgctccggctgctcatcacctgcggnaagcac 653
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctc 58
|||||||||||||| |||||||| ||||| ||||
Sbjct: 273 ccgtacgtgccaccatacgtcccaccgacacctc 306
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 289 bits (146), Expect = 7e-077
Identities = 212/234 (90%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 92 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggacgggt 151
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 152 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 211
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
|||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||
Sbjct: 212 ggacctggacgcggcgctgtgcctctgcaccaccatgcgggcgcgggtcctcaacatcaa 271
Query: 294 catctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgcc 347
|||||||||||| | |||||| |||||||||||||||||||||||| ||||
Sbjct: 272 catctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcc 325
>gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A01 5', mRNA sequence
Length = 411
Score = 283 bits (143), Expect = 4e-075
Identities = 212/235 (90%)
Strand = Plus / Plus
Query: 131 cgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggc 190
||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 3 cgctgaagctgaacgcgtgcgtggacgtgctgagcggactggtgcacctggtgatcgggc 62
Query: 191 aggaggccaggtccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgc 250
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gggaggcgcggagcaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgc 122
Query: 251 tgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcg 310
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||| | |
Sbjct: 123 tgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtgg 182
Query: 311 cgctcaacctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 183 cgctccggctgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 237
>gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. vulgare cDNA clone HF02B20
5-PRIME, mRNA sequence
Length = 517
Score = 281 bits (142), Expect = 2e-074
Identities = 211/234 (90%)
Strand = Plus / Plus
Query: 132 gctgaagctgaacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggca 191
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 10 gctgaagctgaacgcgtgcgtggacgtgctgagcggactggtgcacctggtgatcgggcg 69
Query: 192 ggaggccaggtccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgct 251
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ggaggcgcggagcaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgct 129
Query: 252 gtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgc 311
||||||||||||||||||||| ||||| | ||||||||||||||||||||||| | ||
Sbjct: 130 gtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggc 189
Query: 312 gctcaacctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 190 gctccggctgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 243
>gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F02 5', mRNA sequence
Length = 574
Score = 278 bits (140), Expect = 2e-073
Identities = 179/192 (93%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 380 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 439
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 440 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggc 499
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaa 293
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 500 ggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaa 559
Query: 294 catctacctccc 305
||||||||||||
Sbjct: 560 catctacctccc 571
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctc 58
|||||||||||||| |||||||| ||||| ||||
Sbjct: 228 ccgtacgtgccaccatacgtcccaccgacacctc 261
>gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A06 5', mRNA sequence
Length = 417
Score = 268 bits (135), Expect = 2e-070
Identities = 204/227 (89%)
Strand = Plus / Plus
Query: 139 ctgaacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggcaggaggcc 198
||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct: 1 ctgaacgcgtgcgtggacgtgctgagcggactggtgcacctggtgatcgggcgggaggcg 60
Query: 199 aggtccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctc 258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggagcaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctc 120
Query: 259 tgcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaac 318
|||||||||||||| ||||| | ||||||||||||||||||||||| | ||||||
Sbjct: 121 tgcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccgg 180
Query: 319 ctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 181 ctgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 227
>gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02A12u 3',
mRNA sequence
Length = 531
Score = 238 bits (120), Expect = 2e-061
Identities = 203/228 (89%), Gaps = 2/228 (0%)
Strand = Plus / Minus
Query: 140 tgaacgcgtgcgtggacgtgct-gagcgggct-gatccacctggtgatcgggcaggaggc 197
|||||||||||||||||||||| |||||| || | | |||||||||||||||| ||||||
Sbjct: 499 tgaacgcgtgcgtggacgtgcttgagcggacttggtgcacctggtgatcgggcgggaggc 440
Query: 198 caggtccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcct 257
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcggagcaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcct 380
Query: 258 ctgcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaa 317
||||||||||||||| ||||| | ||||||||||||||||||||||| | ||||||
Sbjct: 379 ctgcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccg 320
Query: 318 cctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 319 gctgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 272
>gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. vulgare cDNA clone HI12B20
3-PRIME, mRNA sequence
Length = 569
Score = 212 bits (107), Expect = 1e-053
Identities = 170/191 (89%)
Strand = Plus / Minus
Query: 175 cacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggcg 234
|||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct: 565 cacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggcg 506
Query: 235 gacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaac 294
||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||
Sbjct: 505 gacctggacgcggcgctgtgcctatgcaccaccatccgggcgcgggtcctcaacatcaac 446
Query: 295 atctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcgggc 354
||||||||||| | |||||| |||||||||||||||||||||||| |||| |||
Sbjct: 445 atctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacggc 386
Query: 355 ttccagtgccc 365
|||||||||||
Sbjct: 385 ttccagtgccc 375
>gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. vulgare cDNA clone HI08J20
3-PRIME, mRNA sequence
Length = 519
Score = 204 bits (103), Expect = 3e-051
Identities = 163/183 (89%)
Strand = Plus / Minus
Query: 183 gatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggcggacctgga 242
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gatcgggcgggaggcgcggagcaagtgctgcccgctggtgcagggggtggcggacctgga 460
Query: 243 cgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaacatctacct 302
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 459 cgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatctacct 400
Query: 303 ccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtg 362
||| | |||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct: 399 cccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacggcttccagtg 340
Query: 363 ccc 365
|||
Sbjct: 339 ccc 337
>gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. vulgare cDNA clone HF16F02
5-PRIME, mRNA sequence
Length = 436
Score = 202 bits (102), Expect = 1e-050
Identities = 147/162 (90%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 65
Query: 264 caccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgct 323
||||||||| ||||| | ||||||||||||||||||||||| | |||||| |||||
Sbjct: 66 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 125
Query: 324 catcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||||||||| |||| ||||||||||||||
Sbjct: 126 catcacctgcggcaagcacccgcccaacggcttccagtgccc 167
>gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I10V 5',
mRNA sequence
Length = 459
Score = 196 bits (99), Expect = 7e-049
Identities = 146/162 (90%)
Strand = Plus / Minus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 382
Query: 264 caccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgct 323
||||||||| ||||| | ||||||||||||||||||||||| | |||||| |||||
Sbjct: 381 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 322
Query: 324 catcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||||||| |||||||||| |||| ||||||||||||||
Sbjct: 321 catcacctncggcaagcacccgcccaacggcttccagtgccc 280
>gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. vulgare cDNA clone HF18K17
5-PRIME, mRNA sequence
Length = 424
Score = 196 bits (99), Expect = 7e-049
Identities = 144/159 (90%)
Strand = Plus / Plus
Query: 207 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccac 70
Query: 267 catccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgctcat 326
|||||| ||||| | ||||||||||||||||||||||| | |||||| ||||||||
Sbjct: 71 catccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgctcat 130
Query: 327 cacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||||||||||||||| |||| ||||||||||||||
Sbjct: 131 cacctgcggcaagcacccgcccaacggcttccagtgccc 169
>gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024F18f, mRNA sequence
Length = 855
Score = 194 bits (98), Expect = 3e-048
Identities = 149/165 (90%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctgat 173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 331 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcgggctggt 390
Query: 174 ccacctggtgatcgggcaggaggccaggtccaagtgctgcccgctggtgcagggggtggc 233
|||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||
Sbjct: 391 gcacctggtgatcgggcgggaggcgcggagcaagtgctgcccgctggtgcanggggtggc 450
Query: 234 ggacctggacgcggcgctgtgcctctgcaccaccatccgcgcgcg 278
|||||||||| ||| || |||||||| |||||||||| |||||
Sbjct: 451 ggacctggacccggggcgtggcctctgc-ccaccatccgggcgcg 494
>gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01u 3',
mRNA sequence
Length = 490
Score = 178 bits (90), Expect = 2e-043
Identities = 166/189 (87%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 179 tggtgatcgggcaggaggccaggtccaagtgctgccc-gct-ggtgcagggggtggcgga 236
|||||||||||| |||||| || ||| |||||||| ||| ||||||||||||||||||
Sbjct: 480 tggtgatcgggcgggaggcgcggagcaantgctgccccgcttggtgcagggggtggcgga 421
Query: 237 cctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaacat 296
|||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 420 cctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacat 361
Query: 297 ctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcgggctt 356
||||||||| | |||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 360 ctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacggctt 301
Query: 357 ccagtgccc 365
|||||||||
Sbjct: 300 ccagtgccc 292
>gb|AL509608.1|AL509608 AL509608 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02F11u 3',
mRNA sequence
Length = 550
Score = 151 bits (76), Expect = 4e-035
Identities = 128/144 (88%), Gaps = 1/144 (0%)
Strand = Plus / Minus
Query: 223 cagggggtggcggacctggacgcggcgct-gtgcctctgcaccaccatccgcgcgcgcct 281
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct: 502 cagggggtggcggacctggacgcggcgcttgtgcctctgcaccaccatccgggcgcgggt 443
Query: 282 gctcaacatcaacatctacctccccatcgcgctcaacctgctcatcacctgcggcaagca 341
||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 442 cctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaagca 383
Query: 342 cgcgccgtcgggcttccagtgccc 365
| |||| ||||||||||||||
Sbjct: 382 cccgcccaacggcttccagtgccc 359
>gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_K15 5', mRNA sequence
Length = 303
Score = 135 bits (68), Expect = 2e-030
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 238 ctggacgcggcgctgtgcctctgcaccaccatccgcgcgcgcctgctcaacatcaacatc 297
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 1 ctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatc 60
Query: 298 tacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgtcgggcttc 357
|||||||| | |||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 61 tacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgcccaacggcttc 120
Query: 358 cagtgccc 365
||||||||
Sbjct: 121 cagtgccc 128
>gb|BU987584.1|BU987584 HF15C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF15C17
5-PRIME, mRNA sequence
Length = 442
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 gcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacc 319
||||||||||||| ||||| | ||||||||||||||||||||||| | |||||| |
Sbjct: 1 gcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggc 60
Query: 320 tgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 61 tgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 106
>gb|BU987936.1|BU987936 HF16D03r HF Hordeum vulgare subsp. vulgare cDNA clone HF16D03
5-PRIME, mRNA sequence
Length = 396
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 gcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacc 319
||||||||||||| ||||| | ||||||||||||||||||||||| | |||||| |
Sbjct: 11 gcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggc 70
Query: 320 tgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 71 tgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 116
>gb|BU988620.1|BU988620 HF18D01r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D01
5-PRIME, mRNA sequence
Length = 396
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 gcaccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacc 319
||||||||||||| ||||| | ||||||||||||||||||||||| | |||||| |
Sbjct: 11 gcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggc 70
Query: 320 tgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 71 tgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 116
>gb|BQ660646.1|BQ660646 HI04K24u HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
3-PRIME, mRNA sequence
Length = 369
Score = 77.8 bits (39), Expect = 5e-013
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 283 ctcaacatcaacatctacctccccatcgcgctcaacctgctcatcacctgcggcaagcac 342
||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 354 ctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaagcac 295
Query: 343 gcgccgtcgggcttccagtgccc 365
|||| ||||||||||||||
Sbjct: 294 ccgcccaacggcttccagtgccc 272
>gb|BQ756100.1|BQ756100 EBem05_SQ001_L15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_L15 5', mRNA sequence
Length = 257
Score = 71.9 bits (36), Expect = 3e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 286 aacatcaacatctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcg 345
|||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||
Sbjct: 5 aacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccg 64
Query: 346 ccgtcgggcttccagtgccc 365
|| ||||||||||||||
Sbjct: 65 cccaacggcttccagtgccc 84
>gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018L24f, mRNA sequence
Length = 887
Score = 65.9 bits (33), Expect = 2e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 207 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||| ||||| | |||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 576 gtgctgcacgctgatccaggggctggcggacctggaggcggcgctgtgcctgtgcac 520
>gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_P18 5', mRNA sequence
Length = 692
Score = 65.9 bits (33), Expect = 2e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 207 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||| ||||| | |||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 373 gtgctgcacgctgatccaggggctggcggacctggaggcggcgctgtgcctgtgcac 429
>gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J06
5-PRIME, mRNA sequence
Length = 373
Score = 65.9 bits (33), Expect = 2e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 207 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||| ||||| | |||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 258 gtgctgcacgctgatccaggggctggcggacctggaggcggcgctgtgcctgtgcac 314
>gb|BU971131.1|BU971131 HB16L05r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L05
5-PRIME, mRNA sequence
Length = 366
Score = 63.9 bits (32), Expect = 7e-009
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 290 tcaacatctacctccccatcgcgctcaacctgctcatcacctgcggcaagcacgcgccgt 349
|||||||||||||||| | |||||| |||||||||||||||||||||||| ||||
Sbjct: 11 tcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaagcacccgccca 70
Query: 350 cgggcttccagtgccc 365
||||||||||||||
Sbjct: 71 acggcttccagtgccc 86
>gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D07 5', mRNA sequence
Length = 142
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 98 cgccgccggcggtgcggacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacg 157
||||||||||| || |||||||||| | |||||||||||||| ||||||||||||
Sbjct: 12 cgccgccggcgacgcagacgtgcccggtggacacgctgaagctcggggcgtgcgtggacc 71
Query: 158 tgctgagcgggctg 171
||||| ||||||||
Sbjct: 72 tgctgggcgggctg 85
>gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.B01, mRNA sequence
Length = 1148
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 241 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 300
Query: 268 atc 270
|||
Sbjct: 301 atc 303
>gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM015cD.02, mRNA sequence
Length = 830
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 158 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 217
Query: 268 atc 270
|||
Sbjct: 218 atc 220
>gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012D19f, mRNA sequence
Length = 827
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 373 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 432
Query: 268 atc 270
|||
Sbjct: 433 atc 435
>gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 5', mRNA sequence
Length = 540
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 97 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 156
Query: 268 atc 270
|||
Sbjct: 157 atc 159
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 223 tgcggcaagcacgtgccgtcctccttccagtgccc 257
>gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17k09 5', mRNA sequence
Length = 500
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 42 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 101
Query: 268 atc 270
|||
Sbjct: 102 atc 104
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 168 tgcggcaagcacgtgccgtcctccttccagtgccc 202
>gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 5', mRNA sequence
Length = 521
Score = 54.0 bits (27), Expect = 7e-006
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 acgtgcccgatcgacacgctgaagctg 141
|||||||||||||||||||||||||||
Sbjct: 33 acgtgcccgatcgacacgctgaagctg 59
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcaggg 227
|||||||||||| |||||||||||
Sbjct: 113 caagtgctgccccctggtgcaggg 136
>gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c05 5', mRNA sequence
Length = 504
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 57 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 116
Query: 268 atc 270
|||
Sbjct: 117 atc 119
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 183 tgcggcaagcacgtgccgtcctccttccagtgccc 217
>gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41g13 5', mRNA sequence
Length = 504
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 46 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 105
Query: 268 atc 270
|||
Sbjct: 106 atc 108
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 172 tgcggcaagcacgtgccgtcctccttccagtgccc 206
>gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 3', mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 478 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 419
Query: 268 atc 270
|||
Sbjct: 418 atc 416
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 352 tgcggcaagcacgtgccgtcctccttccagtgccc 318
>gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17k09 3', mRNA sequence
Length = 477
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 437 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 378
Query: 268 atc 270
|||
Sbjct: 377 atc 375
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 311 tgcggcaagcacgtgccgtcctccttccagtgccc 277
>gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 3', mRNA sequence
Length = 473
Score = 54.0 bits (27), Expect = 7e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 115 acgtgcccgatcgacacgctgaagctg 141
|||||||||||||||||||||||||||
Sbjct: 441 acgtgcccgatcgacacgctgaagctg 415
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 caagtgctgcccgctggtgcaggg 227
|||||||||||| |||||||||||
Sbjct: 361 caagtgctgccccctggtgcaggg 338
>gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c05 3', mRNA sequence
Length = 488
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 434 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 375
Query: 268 atc 270
|||
Sbjct: 374 atc 372
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 308 tgcggcaagcacgtgccgtcctccttccagtgccc 274
>gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41g13 3', mRNA sequence
Length = 477
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 208 tgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccacc 267
|||||||||||| || || ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 437 tgctgcccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccacc 378
Query: 268 atc 270
|||
Sbjct: 377 atc 375
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 331 tgcggcaagcacgcgccgtcgggcttccagtgccc 365
||||||||||||| |||||| ||||||||||||
Sbjct: 311 tgcggcaagcacgtgccgtcctccttccagtgccc 277
>gb|BU980007.1|BU980007 HA18D03r HA Hordeum vulgare subsp. vulgare cDNA clone HA18D03
5-PRIME, mRNA sequence
Length = 322
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 319 ctgctcatcacctgcggcaagcacgcgccgtcgggcttccagtgccc 365
|||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 19 ctgctcatcacctgcggcaagcacccgcccaacggcttccagtgccc 65
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,873
Number of Sequences: 312970
Number of extensions: 112873
Number of successful extensions: 34051
Number of sequences better than 0.5: 126
Number of HSP's better than 0.5 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33637
Number of HSP's gapped (non-prelim): 380
length of query: 743
length of database: 175,134,539
effective HSP length: 19
effective length of query: 724
effective length of database: 169,188,109
effective search space: 122492190916
effective search space used: 122492190916
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)