BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ435714.1|AJ435714 AJ435714 S00002 Hordeum vulgare subs... 280 5e-074
gb|CA000350.1|CA000350 HS08P01u HS Hordeum vulgare subsp. v... 256 8e-067
gb|CK124142.1|CK124142 BES1824107d03 BES1824 Hordeum vulgar... 180 4e-044
gb|AL510982.1|AL510982 AL510982 Hordeum vulgare Barke devel... 161 3e-038
gb|BF262280.2|BF262280 HV_CEa0003F09f Hordeum vulgare seedl... 38 0.33
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 38 0.33
gb|BI776750.2|BI776750 EBpi07_SQ001_K09_R pistil, 12 DPA, n... 38 0.33
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 38 0.33
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 38 0.33
gb|CA009504.1|CA009504 HU14F01r HU Hordeum vulgare subsp. v... 38 0.33
gb|CA009618.1|CA009618 HU14K03r HU Hordeum vulgare subsp. v... 38 0.33
gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. v... 38 0.33
gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. v... 38 0.33
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 38 0.33
gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CB882502.1|CB882502 HL02A18w HL Hordeum vulgare subsp. v... 38 0.33
gb|CB883166.1|CB883166 HQ01G16w HQ Hordeum vulgare subsp. v... 38 0.33
gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed D... 38 0.33
>gb|AJ435714.1|AJ435714 AJ435714 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200059A10F1, mRNA sequence
Length = 568
Score = 280 bits (141), Expect = 5e-074
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 37 cgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtcgtcgccac 96
||||||||| |||||||||||||| |||||||| |||| | || || || ||||||||
Sbjct: 4 cgtcgaggccatgtggctcatgctccagcaggacaagcctgatgactatgttgtcgccac 63
Query: 97 tgaggagtcccacaccgtcgaggagttcctgcaggctgccttcggctacgccggcctcag 156
||||||| ||||||||| ||||||||| ||||||||||||| || |||||||||||||
Sbjct: 64 cgaggagtgccacaccgtggaggagttcttgcaggctgcctttgggtacgccggcctcaa 123
Query: 157 ctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgacagcct 216
|||||||||||| |||||||| |||||||||||||| || ||| | || || ||| ||||
Sbjct: 124 ctggaaggatcatgtggtcatcgacaagaagtactttcgcccttccgaggtggactgcct 183
Query: 217 caagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggttgggttcca 276
|||| || | ||||| |||||| ||||| |||||||||||||||||| |||||
Sbjct: 184 tcagggagattcatccaagtcgaggagagtgcttgggtggaagcccaaggttggcttcca 243
Query: 277 ggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggagaaggttct 336
| |||| || ||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 244 gcagctggttgagatgatggttgataacgacattgagctcgccaagaaggagaaggtcct 303
Query: 337 ggtggatgctgggttccgtgatcccaagcagcagccataga 377
||||||||||||| ||| || |||||||||||||||||||
Sbjct: 304 tgtggatgctgggtaccgcgaccccaagcagcagccataga 344
>gb|CA000350.1|CA000350 HS08P01u HS Hordeum vulgare subsp. vulgare cDNA clone HS08P01
3-PRIME, mRNA sequence
Length = 524
Score = 256 bits (129), Expect = 8e-067
Identities = 249/289 (86%)
Strand = Plus / Minus
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcctgcaggctgccttcggctacgcc 148
|||||||| ||||||| ||||||||| ||||||||| ||||||||||||| || ||||||
Sbjct: 501 gtcgccaccgaggagtgccacaccgtggaggagttcttgcaggctgcctttgggtacgcc 442
Query: 149 ggcctcagctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtc 208
||||||| |||||||||||| |||||||| |||||||||||||| || ||| | || ||
Sbjct: 441 ggcctcaactggaaggatcatgtggtcatcgacaagaagtactttcgcccttccgaggtg 382
Query: 209 gacagcctcaagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggtt 268
||| |||| |||| || | ||||| |||||| ||||| ||||||||||||||||
Sbjct: 381 gactgccttcagggagattcatccaagtcgaggagagtgcttgggtggaagcccaaggtt 322
Query: 269 gggttccaggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggag 328
|| |||||| |||| || ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 321 ggcttccagcagctggttgagatgatggttgataacgacattgagctcgccaagaaggag 262
Query: 329 aaggttctggtggatgctgggttccgtgatcccaagcagcagccataga 377
||||| || ||||||||||||| ||| || |||||||||||||||||||
Sbjct: 261 aaggtccttgtggatgctgggtaccgcgaccccaagcagcagccataga 213
>gb|CK124142.1|CK124142 BES1824107d03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D037 5-PRIME, mRNA sequence
Length = 847
Score = 180 bits (91), Expect = 4e-044
Identities = 163/187 (87%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||| ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 562 ccgccagggattggggcttcgccggggattacgtcgaggccatgtggctcatgctccagc 621
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| | || || || |||||||| ||||||| ||||||||| |||||||||
Sbjct: 622 aggacaagcctgatgactatgttgtcgccaccgaggagtgccacaccgtggaggagttct 681
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
||||||||||||| || ||||||||||||| |||||||||||| |||||||| |||||||
Sbjct: 682 tgcaggctgcctttgggtacgccggcctcaactggaaggatcatgtggtcatcgacaaga 741
Query: 186 agtactt 192
|||||||
Sbjct: 742 agtactt 748
>gb|AL510982.1|AL510982 AL510982 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06K01u 3',
mRNA sequence
Length = 455
Score = 161 bits (81), Expect = 3e-038
Identities = 114/125 (91%)
Strand = Plus / Minus
Query: 253 gtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattga 312
|||||||||||||||||| |||||| |||| || ||||||||||| ||| ||||||||||
Sbjct: 360 gtggaagcccaaggttggcttccagcagctggttgagatgatggttgataacgacattga 301
Query: 313 gctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagcc 372
||||||||||||||||||||| || ||||||||||||| ||| || ||||||||||||||
Sbjct: 300 gctcgccaagaaggagaaggtccttgtggatgctgggtaccgcgaccccaagcagcagcc 241
Query: 373 ataga 377
|||||
Sbjct: 240 ataga 236
>gb|BF262280.2|BF262280 HV_CEa0003F09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0003F09f, mRNA sequence
Length = 623
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 ggagctcgtggagatgatg 295
|||||||||||||||||||
Sbjct: 464 ggagctcgtggagatgatg 482
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 428 gaaggagctcaagtggaaggccaagtttggg 398
>gb|BI776750.2|BI776750 EBpi07_SQ001_K09_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_K09 5', mRNA sequence
Length = 510
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 58 gctgcagcaggaacagccg 76
|||||||||||||||||||
Sbjct: 240 gctgcagcaggaacagccg 222
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 365 gaaggagctcaagtggaaggccaagtttggg 395
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 359 gaaggagctcaagtggaaggccaagtttggg 389
>gb|CA009504.1|CA009504 HU14F01r HU Hordeum vulgare subsp. vulgare cDNA clone HU14F01
5-PRIME, mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 ggagctcgtggagatgatg 295
|||||||||||||||||||
Sbjct: 285 ggagctcgtggagatgatg 303
>gb|CA009618.1|CA009618 HU14K03r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K03
5-PRIME, mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 ggagctcgtggagatgatg 295
|||||||||||||||||||
Sbjct: 285 ggagctcgtggagatgatg 303
>gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11O08
3-PRIME, mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 445 gaaggagctcaagtggaaggccaagtttggg 415
>gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C10
3-PRIME, mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 441 gaaggagctcaagtggaaggccaagtttggg 411
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 452 gaaggagctcaagtggaaggccaagtttggg 482
>gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B01
5-PRIME, mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 210 gaaggagctcaagtggaaggccaagtttggg 240
>gb|CB882502.1|CB882502 HL02A18w HL Hordeum vulgare subsp. vulgare cDNA clone HL02A18
3-PRIME, mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 ggagctcgtggagatgatg 295
|||||||||||||||||||
Sbjct: 470 ggagctcgtggagatgatg 488
>gb|CB883166.1|CB883166 HQ01G16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01G16
3-PRIME, mRNA sequence
Length = 642
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 ggagctcgtggagatgatg 295
|||||||||||||||||||
Sbjct: 469 ggagctcgtggagatgatg 487
>gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03cd03, mRNA sequence
Length = 525
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 241 gaaggtgctcaagtggaagcccaaggttggg 271
||||| ||||||||||||| ||||| |||||
Sbjct: 456 gaaggagctcaagtggaaggccaagtttggg 426
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,250
Number of Sequences: 312970
Number of extensions: 89250
Number of successful extensions: 28602
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28575
Number of HSP's gapped (non-prelim): 24
length of query: 623
length of database: 175,134,539
effective HSP length: 19
effective length of query: 604
effective length of database: 169,188,109
effective search space: 102189617836
effective search space used: 102189617836
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)