BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 133 8e-030
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 133 8e-030
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 133 8e-030
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 133 8e-030
gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. v... 133 8e-030
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 133 8e-030
gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. v... 133 8e-030
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 94 7e-018
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 94 7e-018
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 94 7e-018
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 94 7e-018
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 94 7e-018
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 88 4e-016
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 88 4e-016
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 88 4e-016
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 88 4e-016
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 88 4e-016
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 82 3e-014
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 80 1e-013
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 80 1e-013
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 76 2e-012
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 74 6e-012
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 74 6e-012
gb|AJ462527.1|AJ462527 AJ462527 S00002 Hordeum vulgare subs... 66 2e-009
gb|BU983199.1|BU983199 HA28N24r HA Hordeum vulgare subsp. v... 64 6e-009
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 64 6e-009
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 64 6e-009
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 50 9e-005
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 50 9e-005
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 50 9e-005
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 46 0.001
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 46 0.001
gb|CA006089.1|CA006089 HU05D17u HU Hordeum vulgare subsp. v... 46 0.001
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 44 0.006
gb|AL504857.1|AL504857 AL504857 Hordeum vulgare Barke roots... 42 0.023
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 42 0.023
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 42 0.023
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 42 0.023
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 42 0.023
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 42 0.023
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 40 0.091
gb|BQ767585.1|BQ767585 EBro08_SQ009_F09 _R root, 3 week, dr... 38 0.36
>gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005F10f, mRNA sequence
Length = 947
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 254 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 195
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 194 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 135
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 134 gagcagcgcgttgctctgccagttctgcccccagt 100
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 364 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 305
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 304 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 245
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 244 gagcagcgcgttgctctgccagttctgcccccagt 210
>gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 3', mRNA sequence
Length = 710
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Plus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 423 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 482
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 483 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 542
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 543 gagcagcgcgttgctctgccagttctgcccccagt 577
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 364 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 305
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 304 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 245
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 244 gagcagcgcgttgctctgccagttctgcccccagt 210
>gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K23
5-PRIME, mRNA sequence
Length = 582
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 231 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 172
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 171 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 112
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 111 gagcagcgcgttgctctgccagttctgcccccagt 77
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 596 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 537
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 536 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 477
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 476 gagcagcgcgttgctctgccagttctgcccccagt 442
>gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
3-PRIME, mRNA sequence
Length = 650
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Plus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 451 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 510
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||||||||| |||||| || | || |||||||| |||||| ||||||||||
Sbjct: 511 gttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgcccgtc 570
Query: 613 caggagcgtgttgctctgccagttctggccccagt 647
|| |||| |||||||||||||||||| |||||||
Sbjct: 571 gagcagcgcgttgctctgccagttctgcccccagt 605
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 93.7 bits (47), Expect = 7e-018
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 449 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 390
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 389 ttgctctgccagttctggccccagttgcgggacatggcctgccaccc 343
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 93.7 bits (47), Expect = 7e-018
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 318 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 377
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 378 ttgctctgccagttctggccccagttgcgggacatggcctgccaccc 424
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 93.7 bits (47), Expect = 7e-018
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 387 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 328
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 327 ttgctctgccagttctggccccagttgcgggacatggcctgccaccc 281
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 93.7 bits (47), Expect = 7e-018
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 251 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 192
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 191 ttgctctgccagttctggccccagttgcgggacatggcctgccaccc 145
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 93.7 bits (47), Expect = 7e-018
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 373 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 314
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 313 ttgctctgccagttctggccccagttgcgggacatggcctgccaccc 267
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 87.7 bits (44), Expect = 4e-016
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 495 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 436
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 435 ttgctctgccagttcatgccccagttgcgggacatggcctgcca 392
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 87.7 bits (44), Expect = 4e-016
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 306 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 247
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 246 ttgctctgccagttcatgccccagttgcgggacatggcctgcca 203
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 87.7 bits (44), Expect = 4e-016
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 476 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 535
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 536 ttgctctgccagttcatgccccagttgcgggacatggcctgcca 579
>gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B01
5-PRIME, mRNA sequence
Length = 685
Score = 87.7 bits (44), Expect = 4e-016
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 165 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 106
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 105 ttgctctgccagttcatgccccagttgcgggacatggcctgcca 62
>gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D12
5-PRIME, mRNA sequence
Length = 475
Score = 87.7 bits (44), Expect = 4e-016
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 211 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 152
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 151 ttgctctgccagttcatgccccagttgcgggacatggcctgcca 108
>gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12u 3', mRNA sequence
Length = 567
Score = 81.8 bits (41), Expect = 3e-014
Identities = 92/108 (85%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| |||||| |||||||||||| ||| ||||| ||| || |
Sbjct: 415 acggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcgaggtccgcg 474
Query: 623 ttgctctgccagttctggcccca--gtgcgcgacagggcctgccaccc 668
||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 475 ttgctctgccagttctggccccaagttgcgggacatggcctgccaccc 522
>gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 3', mRNA sequence
Length = 567
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | |||||||||| ||| |||||||||| |||
Sbjct: 484 acggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtg 543
Query: 623 ttgctctgccagttctggccccag 646
||||||||||||||| |||||||
Sbjct: 544 ttgctctgccagttcatgccccag 567
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 79.8 bits (40), Expect = 1e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 548 gcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgc 607
|||||| ||||||||||||| |||||| || | || |||||||| |||||| |||||
Sbjct: 414 gcgttgttggagaccacggactggccgttgcctgccgtcacgcggaacgagaggccctgc 355
Query: 608 ccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||| || |||| |||||||||||||||||| |||||||
Sbjct: 354 ccgtcgagcagcgcgttgctctgccagttctgcccccagt 315
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 75.8 bits (38), Expect = 2e-012
Identities = 84/98 (85%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 569 cggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctc 628
||||||||||||| |||||| | |||||||||| ||| |||||||||| ||| |||||
Sbjct: 326 cggccgtcgctggaggtgaccctgaaggagaggcactggccgtccaggaaggtgatgctc 267
Query: 629 tgccagttctggccccag-tgcgcgacagggcctgcca 665
||||||||| ||||||| |||| |||| |||||||||
Sbjct: 266 tgccagttcatgccccagttgcgggacatggcctgcca 229
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 73.8 bits (37), Expect = 6e-012
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 587 acgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggccccag 646
|||||||| |||||| |||||||||| || |||| |||||||||||||||||| ||||||
Sbjct: 481 acgcggaacgagaggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccag 422
Query: 647 t 647
|
Sbjct: 421 t 421
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 73.8 bits (37), Expect = 6e-012
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 587 acgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggccccag 646
|||||||| |||||| |||||||||| || |||| |||||||||||||||||| ||||||
Sbjct: 498 acgcggaacgagaggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccag 439
Query: 647 t 647
|
Sbjct: 438 t 438
>gb|AJ462527.1|AJ462527 AJ462527 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200057G11F1, mRNA sequence
Length = 360
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 65 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcgggacggcgtt 6
Query: 553 g 553
|
Sbjct: 5 g 5
>gb|BU983199.1|BU983199 HA28N24r HA Hordeum vulgare subsp. vulgare cDNA clone HA28N24
5-PRIME, mRNA sequence
Length = 534
Score = 63.9 bits (32), Expect = 6e-009
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggg 544
||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 73 tcagtggaactgggcgccgctgaaggtctggccgaatgaccagccgcgcggg 22
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 63.9 bits (32), Expect = 6e-009
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 622 gttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 533 gttgctctgccagttctggccccagttgcgggacatggcctgccaccc 486
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 63.9 bits (32), Expect = 6e-009
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 622 gttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 428 gttgctctgccagttctggccccagttgcgggacatggcctgccaccc 381
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 9e-005
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 622 gttgctctgccagttctggccccag-tgcgcgacagggcct 661
|||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 451 gttgctttgccagttctggccccagttgcgggacagggcct 411
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 569 cggccgtcgctggtggtgacgcggaagga 597
|||||||||||||||||||| ||||||||
Sbjct: 398 cggccgtcgctggtggtgacccggaagga 370
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 50.1 bits (25), Expect = 9e-005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 569 cggccgtcgctggtggtgacgcggaagga 597
|||||||||||||||||||| ||||||||
Sbjct: 350 cggccgtcgctggtggtgacccggaagga 322
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 622 gttgctctgccagttctggcccc 644
|||||||||||||||||||||||
Sbjct: 596 gttgctctgccagttctggcccc 574
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.001
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct: 512 gtgttgctctgccagttcatgccccagttgcgggacatggcctgcca 466
>gb|CA006089.1|CA006089 HU05D17u HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
3-PRIME, mRNA sequence
Length = 544
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagg 601
|||| ||||||||||||| |||||| ||||||||||||
Sbjct: 501 acggtgcggccgtcgctgagggtgacccggaaggagagg 539
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.006
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 593 aaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggccccagtgcg 650
||||||||| ||| ||||| ||| || ||||||||||||||| |||||||| ||||
Sbjct: 500 aaggagaggctctgaccgtcgaggtccgcgttgctctgccagttatggccccattgcg 443
>gb|AL504857.1|AL504857 AL504857 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06J20V 5', mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 578 ctggtggtgacgcggaaggag 598
|||||||||||||||||||||
Sbjct: 302 ctggtggtgacgcggaaggag 322
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.023
Identities = 44/49 (89%), Gaps = 2/49 (4%)
Strand = Plus / Minus
Query: 622 gttgctctgcc-agttctggccccagtgcgcg-acagggcctgccaccc 668
||||||||||| ||||||| |||||||||| | ||| ||||||||||||
Sbjct: 667 gttgctctgcccagttctgaccccagtgcgggcacatggcctgccaccc 619
>gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020C04f, mRNA sequence
Length = 906
Score = 42.1 bits (21), Expect = 0.023
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccag-tgcgcgaca 655
||||||||||||||||||| |||||||||
Sbjct: 79 ctgccagttctggccccagttgcgcgaca 51
>gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 5', mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 514 gaaggtctggccgaagcccca 534
|||||||||||||||||||||
Sbjct: 257 gaaggtctggccgaagcccca 237
>gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 3', mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 514 gaaggtctggccgaagcccca 534
|||||||||||||||||||||
Sbjct: 306 gaaggtctggccgaagcccca 326
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 514 gaaggtctggccgaagcccca 534
|||||||||||||||||||||
Sbjct: 397 gaaggtctggccgaagcccca 377
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.091
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
|||||||||||||||||| ||||||||
Sbjct: 730 gtgttgctctgccagttcatgccccagt 703
>gb|BQ767585.1|BQ767585 EBro08_SQ009_F09 _R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_F09 5', mRNA sequence
Length = 482
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 513 tgaaggtctggccgaagccccag 535
|||||||||||||||| ||||||
Sbjct: 152 tgaaggtctggccgaacccccag 130
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,765
Number of Sequences: 312970
Number of extensions: 56765
Number of successful extensions: 15305
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15224
Number of HSP's gapped (non-prelim): 66
length of query: 668
length of database: 175,134,539
effective HSP length: 19
effective length of query: 649
effective length of database: 169,188,109
effective search space: 109803082741
effective search space used: 109803082741
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)