BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594147.2.1
(744 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV058907.1|CV058907 BNEL42c7 Barley EST endosperm librar... 127 6e-028
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 66 2e-009
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 64 7e-009
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 64 7e-009
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 64 7e-009
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 64 7e-009
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 64 7e-009
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 64 7e-009
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 64 7e-009
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 50 1e-004
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 50 1e-004
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 50 1e-004
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 50 1e-004
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 46 0.002
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 44 0.006
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 44 0.006
gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow st... 40 0.10
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 40 0.10
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 40 0.10
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 40 0.10
gb|BF627921.2|BF627921 HVSMEb0006I23f Hordeum vulgare seedl... 38 0.40
gb|BG300039.1|BG300039 HVSMEb0011B19f Hordeum vulgare seedl... 38 0.40
gb|BF618342.2|BF618342 HVSMEc0005G15f Hordeum vulgare seedl... 38 0.40
gb|BF254651.2|BF254651 HVSMEf0004K05f Hordeum vulgare seedl... 38 0.40
gb|AW983360.2|AW983360 HVSMEg0010F15f Hordeum vulgare pre-a... 38 0.40
gb|BG343657.1|BG343657 HVSMEg0006C10f Hordeum vulgare pre-a... 38 0.40
gb|BG365948.1|BG365948 HVSMEi0005H07f Hordeum vulgare 20 DA... 38 0.40
gb|BG369509.1|BG369509 HVSMEi0024L02f Hordeum vulgare 20 DA... 38 0.40
gb|BG416452.1|BG416452 HVSMEk0012F13f Hordeum vulgare testa... 38 0.40
gb|BI960116.1|BI960116 HVSMEn0023E16f Hordeum vulgare rachi... 38 0.40
gb|BF258673.3|BF258673 HVSMEf0016G01f Hordeum vulgare seedl... 38 0.40
gb|BE060212.3|BE060212 HVSMEg0011J08f Hordeum vulgare pre-a... 38 0.40
gb|BE455876.3|BE455876 HVSMEg0015P19f Hordeum vulgare pre-a... 38 0.40
gb|BE454808.3|BE454808 HVSMEh0095C03f Hordeum vulgare 5-45 ... 38 0.40
gb|BQ458785.1|BQ458785 HA04D19r HA Hordeum vulgare subsp. v... 38 0.40
gb|BQ470750.1|BQ470750 HX03O19r HX Hordeum vulgare subsp. v... 38 0.40
gb|BM375475.2|BM375475 EBem06_SQ003_H11_R embryo, 21 DPA, n... 38 0.40
gb|BM373935.2|BM373935 EBma03_SQ003_C15_R maternal, 8 DPA, ... 38 0.40
gb|BM373331.2|BM373331 EBma04_SQ004_A18_R maternal, 10 DPA,... 38 0.40
gb|BI777841.2|BI777841 EBro08_SQ002_E12_R root, 3 week, dro... 38 0.40
gb|BU979666.1|BU979666 HA16O01r HA Hordeum vulgare subsp. v... 38 0.40
gb|CA001773.1|CA001773 HS05I16r HS Hordeum vulgare subsp. v... 38 0.40
gb|CA002167.1|CA002167 HS06L13r HS Hordeum vulgare subsp. v... 38 0.40
gb|CA003253.1|CA003253 HS09N22r HS Hordeum vulgare subsp. v... 38 0.40
gb|CA007056.1|CA007056 HU06J17r HU Hordeum vulgare subsp. v... 38 0.40
gb|CA007666.1|CA007666 HU08K13r HU Hordeum vulgare subsp. v... 38 0.40
gb|CA018744.1|CA018744 HV09I12r HV Hordeum vulgare subsp. v... 38 0.40
gb|CA018937.1|CA018937 HV10C08r HV Hordeum vulgare subsp. v... 38 0.40
gb|CA019548.1|CA019548 HV12F12r HV Hordeum vulgare subsp. v... 38 0.40
gb|CA023223.1|CA023223 HZ45J13r HZ Hordeum vulgare subsp. v... 38 0.40
gb|CA030385.1|CA030385 HX06O11r HX Hordeum vulgare subsp. v... 38 0.40
>gb|CV058907.1|CV058907 BNEL42c7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42c7 5' similar to beta-expansin,
mRNA sequence
Length = 502
Score = 127 bits (64), Expect = 6e-028
Identities = 145/172 (84%)
Strand = Plus / Minus
Query: 282 tcacagccacgccgccagaccggtacgcgacgccggcgttccaccccgcaggtatggcgt 341
|||| ||||||||||| | | ||||||| ||||||| ||||||||| | ||||||||| |
Sbjct: 231 tcaccgccacgccgcctggctggtacgccacgccggggttccacccggtaggtatggcat 172
Query: 342 tgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccctgga 401
||| |||||| ||| | |||| || ||||| || || |||||| |||||| |||||||
Sbjct: 171 tgccggcgacaagcatcttgccggacctgaacgtcagccggatggagaagggcccctgga 112
Query: 402 ggacggagccggagttgatcttccacacggcgccccacgactgctgcatcgg 453
|| |||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 111 gggtggagccggagttgagcttccacaccgcgccccatgactgctgcatcgg 60
>gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026K23f, mRNA sequence
Length = 492
Score = 65.9 bits (33), Expect = 2e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 477 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 418
Query: 720 catcaggacacgggcaatcggggca 744
|||| | ||||| || ||||||||
Sbjct: 417 catccaggcacggccagtcggggca 393
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 427 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 368
Query: 720 catc 723
||||
Sbjct: 367 catc 364
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 566 tcctcgtactcgatgagcacggcgaggtagtaggggttggagcc 523
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 474 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 415
Query: 720 catc 723
||||
Sbjct: 414 catc 411
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 337 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 278
Query: 720 catc 723
||||
Sbjct: 277 catc 274
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 476 tcctcgtactcgatgagcacggcgaggtagtaggggttggagcc 433
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 477 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 418
Query: 720 catc 723
||||
Sbjct: 417 catc 414
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
||||||||||| || |||||||| ||||||| |||||||||||
Sbjct: 616 tcctcgtactcaatgagcacggcgaggtagtaggggttggagcc 573
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 82 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 23
Query: 720 catc 723
||||
Sbjct: 22 catc 19
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||||||||| |||||||| ||||||| |||||| ||||
Sbjct: 221 tcctcgtactcgatgagcacggcgaggtagtaggggttgaagcc 178
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 109 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 50
Query: 720 catc 723
||||
Sbjct: 49 catc 46
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 248 tcctcgtactcgatgagcacggcgaggtagtaggggttggagcc 205
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 63.9 bits (32), Expect = 7e-009
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 660 cctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgct 719
|||| ||||||||||||| | | |||||||| |||||||||| |||||||||||| |||
Sbjct: 123 cctggccgggcttcgccatgccgccgaacgccgtcccgctcaggtcgaagtggacgggct 64
Query: 720 catc 723
||||
Sbjct: 63 catc 60
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 262 tcctcgtactcgatgagcacggcgaggtagtaggggttggagcc 219
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggta 549
|||||||||||||||||||| ||||||||
Sbjct: 637 tcctcgtactcgatcagcaccgccaggta 609
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggta 549
|||||||||||||||||||| ||||||||
Sbjct: 176 tcctcgtactcgatcagcaccgccaggta 148
>gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D09f, mRNA sequence
Length = 864
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 683 ccgaacgctgtcccgctcatgtcgaagtggacctgctcatc 723
|||||||| |||||||||| |||||||||||| |||||||
Sbjct: 454 ccgaacgcagtcccgctcaggtcgaagtggacgggctcatc 414
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 521 tcctcgtactcgatcagcacggccaggta 549
|||||||||||||||||||| ||||||||
Sbjct: 570 tcctcgtactcgatcagcaccgccaggta 598
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggta 549
|||||||||||||||||||| ||||||||
Sbjct: 57 tcctcgtactcgatcagcaccgccaggta 29
>gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080H17f, mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.002
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 665 ccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgctcatc 723
||||||||||||| | | |||| ||| |||||||||| |||||||||||| |||||||
Sbjct: 471 ccgggcttcgccatgccgccga-cgcggtcccgctcaggtcgaagtggacgggctcatc 414
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 44.1 bits (22), Expect = 0.006
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcccggctccacc 574
|||||| ||||||||||||| |||||||| |||||||||||| | ||||||
Sbjct: 408 tcctcgaactcgatcagcacctccaggtagaaggggttggagccctggtccacc 355
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.006
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 521 tcctcgtactcgatcagcacggccaggtagttcgggttggagcccggctccacc 574
|||||| ||||||||||||| |||||||| |||||||||||| | ||||||
Sbjct: 424 tcctcgaactcgatcagcacctccaggtagaaggggttggagccctggtccacc 371
>gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_K24 5', mRNA sequence
Length = 147
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 424 ccacacggcgccccacgactgctgcatc 451
||||| |||||||||||||||| |||||
Sbjct: 29 ccacagggcgccccacgactgccgcatc 2
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.10
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 434 ccccacgactgctgcatcggcacccactgccc 465
|||||||||| || ||| ||||||||||||||
Sbjct: 324 ccccacgactccttcatgggcacccactgccc 355
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.10
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 434 ccccacgactgctgcatcggcacccactgccc 465
|||||||||| || ||| ||||||||||||||
Sbjct: 304 ccccacgactccttcatgggcacccactgccc 273
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.10
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 434 ccccacgactgctgcatcggcacccactgccc 465
|||||||||| || ||| ||||||||||||||
Sbjct: 691 ccccacgactccttcatgggcacccactgccc 660
>gb|BF627921.2|BF627921 HVSMEb0006I23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006I23f, mRNA sequence
Length = 765
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 107 cctgggcctggccctcgtc 125
>gb|BG300039.1|BG300039 HVSMEb0011B19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011B19f, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 110 cctgggcctggccctcgtc 128
>gb|BF618342.2|BF618342 HVSMEc0005G15f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005G15f, mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 118 cctgggcctggccctcgtc 136
>gb|BF254651.2|BF254651 HVSMEf0004K05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004K05f, mRNA sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 121 cctgggcctggccctcgtc 139
>gb|AW983360.2|AW983360 HVSMEg0010F15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010F15f, mRNA sequence
Length = 839
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 128 cctgggcctggccctcgtc 146
>gb|BG343657.1|BG343657 HVSMEg0006C10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006C10f, mRNA sequence
Length = 935
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 127 cctgggcctggccctcgtc 145
>gb|BG365948.1|BG365948 HVSMEi0005H07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0005H07f, mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 127 cctgggcctggccctcgtc 145
>gb|BG369509.1|BG369509 HVSMEi0024L02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024L02f, mRNA sequence
Length = 830
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 120 cctgggcctggccctcgtc 138
>gb|BG416452.1|BG416452 HVSMEk0012F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012F13f, mRNA sequence
Length = 699
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 119 cctgggcctggccctcgtc 137
>gb|BI960116.1|BI960116 HVSMEn0023E16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E16f, mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 123 cctgggcctggccctcgtc 141
>gb|BF258673.3|BF258673 HVSMEf0016G01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016G01f, mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 15 cctgggcctggccctcgtc 33
>gb|BE060212.3|BE060212 HVSMEg0011J08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011J08f, mRNA sequence
Length = 543
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 120 cctgggcctggccctcgtc 138
>gb|BE455876.3|BE455876 HVSMEg0015P19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015P19f, mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 116 cctgggcctggccctcgtc 134
>gb|BE454808.3|BE454808 HVSMEh0095C03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095C03f, mRNA sequence
Length = 705
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 120 cctgggcctggccctcgtc 138
>gb|BQ458785.1|BQ458785 HA04D19r HA Hordeum vulgare subsp. vulgare cDNA clone HA04D19
5-PRIME, mRNA sequence
Length = 424
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 138 cctgggcctggccctcgtc 156
>gb|BQ470750.1|BQ470750 HX03O19r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O19
5-PRIME, mRNA sequence
Length = 133
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 112 cctgggcctggccctcgtc 130
>gb|BM375475.2|BM375475 EBem06_SQ003_H11_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_H11 5', mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 125 cctgggcctggccctcgtc 143
>gb|BM373935.2|BM373935 EBma03_SQ003_C15_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_C15 5', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 125 cctgggcctggccctcgtc 143
>gb|BM373331.2|BM373331 EBma04_SQ004_A18_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_A18 5', mRNA sequence
Length = 510
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 127 cctgggcctggccctcgtc 145
>gb|BI777841.2|BI777841 EBro08_SQ002_E12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E12 5', mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 129 cctgggcctggccctcgtc 147
>gb|BU979666.1|BU979666 HA16O01r HA Hordeum vulgare subsp. vulgare cDNA clone HA16O01
5-PRIME, mRNA sequence
Length = 402
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 129 cctgggcctggccctcgtc 147
>gb|CA001773.1|CA001773 HS05I16r HS Hordeum vulgare subsp. vulgare cDNA clone HS05I16
5-PRIME, mRNA sequence
Length = 423
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 137 cctgggcctggccctcgtc 155
>gb|CA002167.1|CA002167 HS06L13r HS Hordeum vulgare subsp. vulgare cDNA clone HS06L13
5-PRIME, mRNA sequence
Length = 372
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 137 cctgggcctggccctcgtc 155
>gb|CA003253.1|CA003253 HS09N22r HS Hordeum vulgare subsp. vulgare cDNA clone HS09N22
5-PRIME, mRNA sequence
Length = 300
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 137 cctgggcctggccctcgtc 155
>gb|CA007056.1|CA007056 HU06J17r HU Hordeum vulgare subsp. vulgare cDNA clone HU06J17
5-PRIME, mRNA sequence
Length = 244
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 135 cctgggcctggccctcgtc 153
>gb|CA007666.1|CA007666 HU08K13r HU Hordeum vulgare subsp. vulgare cDNA clone HU08K13
5-PRIME, mRNA sequence
Length = 135
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 60 cctgggcctggccctcgtc 78
>gb|CA018744.1|CA018744 HV09I12r HV Hordeum vulgare subsp. vulgare cDNA clone HV09I12
5-PRIME, mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 138 cctgggcctggccctcgtc 156
>gb|CA018937.1|CA018937 HV10C08r HV Hordeum vulgare subsp. vulgare cDNA clone HV10C08
5-PRIME, mRNA sequence
Length = 528
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 138 cctgggcctggccctcgtc 156
>gb|CA019548.1|CA019548 HV12F12r HV Hordeum vulgare subsp. vulgare cDNA clone HV12F12
5-PRIME, mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 cctgggcctggccctcgtc 283
|||||||||||||||||||
Sbjct: 12 cctgggcctggccctcgtc 30
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,755
Number of Sequences: 312970
Number of extensions: 85755
Number of successful extensions: 23406
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23330
Number of HSP's gapped (non-prelim): 75
length of query: 744
length of database: 175,134,539
effective HSP length: 19
effective length of query: 725
effective length of database: 169,188,109
effective search space: 122661379025
effective search space used: 122661379025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)