BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL508293.1|AL508293 AL508293 Hordeum vulgare Barke devel... 412 e-114
gb|AV924501.1|AV924501 AV924501 K. Sato unpublished cDNA li... 412 e-114
gb|AV927834.1|AV927834 AV927834 K. Sato unpublished cDNA li... 412 e-114
gb|AV929590.1|AV929590 AV929590 K. Sato unpublished cDNA li... 412 e-114
gb|BM817120.1|BM817120 HC110B07_T3.ab1 HC Hordeum vulgare s... 412 e-114
gb|BQ460152.1|BQ460152 HA07B05r HA Hordeum vulgare subsp. v... 412 e-114
gb|BU970301.1|BU970301 HB14D20r BC Hordeum vulgare subsp. v... 412 e-114
gb|BU998847.1|BU998847 HI12F13r HI Hordeum vulgare subsp. v... 412 e-114
gb|BQ766601.1|BQ766601 EBro08_SQ006_G17_R root, 3 week, dro... 402 e-111
gb|CB860013.1|CB860013 HI12F13w HI Hordeum vulgare subsp. v... 402 e-111
gb|AV931292.1|AV931292 AV931292 K. Sato unpublished cDNA li... 394 e-108
gb|BG415596.2|BG415596 HVSMEk0007C06f Hordeum vulgare testa... 389 e-106
gb|AV926409.1|AV926409 AV926409 K. Sato unpublished cDNA li... 385 e-105
gb|BM098110.2|BM098110 EBpi03_SQ002_J08_R pistil, 4 DPA, no... 385 e-105
gb|BU982068.1|BU982068 HA25G22r HA Hordeum vulgare subsp. v... 385 e-105
gb|CV061961.1|CV061961 BNEL74g8 Barley EST endosperm librar... 383 e-105
gb|CV057135.1|CV057135 BNEL24d4 Barley EST endosperm librar... 381 e-104
gb|BQ657773.1|BQ657773 HA07B05u HA Hordeum vulgare subsp. v... 379 e-103
gb|AV929597.1|AV929597 AV929597 K. Sato unpublished cDNA li... 375 e-102
gb|BQ762174.1|BQ762174 EBro01_SQ005_D05_R root, 3 week, hyd... 369 e-100
gb|BF618752.2|BF618752 HVSMEc0007K15f Hordeum vulgare seedl... 351 2e-095
gb|BE454600.2|BE454600 HVSMEh0094K24f Hordeum vulgare 5-45 ... 343 6e-093
gb|AV923126.1|AV923126 AV923126 K. Sato unpublished cDNA li... 343 6e-093
gb|BI952446.1|BI952446 HVSMEm0006H17f Hordeum vulgare green... 341 2e-092
gb|BM375286.2|BM375286 EBem06_SQ002_O05_R embryo, 21 DPA, n... 335 1e-090
gb|BU979844.1|BU979844 HA17I05r HA Hordeum vulgare subsp. v... 333 6e-090
gb|BU988661.1|BU988661 HF18F08r HF Hordeum vulgare subsp. v... 333 6e-090
gb|BU996898.1|BU996898 HI06C14r HI Hordeum vulgare subsp. v... 333 6e-090
gb|AL511520.1|AL511520 AL511520 Hordeum vulgare Barke devel... 317 3e-085
gb|BU988940.1|BU988940 HF19D13r HF Hordeum vulgare subsp. v... 299 8e-080
gb|BM372965.2|BM372965 EBma04_SQ002_J06_R maternal, 10 DPA,... 291 2e-077
gb|AL505905.1|AL505905 AL505905 Hordeum vulgare Barke roots... 289 8e-077
gb|BF628481.3|BF628481 HVSMEb0006D18f Hordeum vulgare seedl... 274 5e-072
gb|CV062596.1|CV062596 BNEL80g7 Barley EST endosperm librar... 266 1e-069
gb|CV060436.1|CV060436 BNEL58b11 Barley EST endosperm libra... 254 4e-066
gb|BU980725.1|BU980725 HA21H24r HA Hordeum vulgare subsp. v... 248 3e-064
gb|CB858204.1|CB858204 HI06C14w HI Hordeum vulgare subsp. v... 248 3e-064
gb|AV916947.1|AV916947 AV916947 K. Sato unpublished cDNA li... 242 2e-062
gb|BU980189.1|BU980189 HA18P01r HA Hordeum vulgare subsp. v... 240 6e-062
gb|CB858274.1|CB858274 HI06G14w HI Hordeum vulgare subsp. v... 236 1e-060
gb|BU988354.1|BU988354 HF17G09r HF Hordeum vulgare subsp. v... 234 4e-060
gb|BF631450.3|BF631450 HVSMEb0015P19f Hordeum vulgare seedl... 232 2e-059
gb|AV918196.1|AV918196 AV918196 K. Sato unpublished cDNA li... 218 2e-055
gb|BI950558.1|BI950558 HVSMEl0021F09f Hordeum vulgare spike... 206 9e-052
gb|AL503150.1|AL503150 AL503150 Hordeum vulgare Barke roots... 168 2e-040
gb|BM099716.2|BM099716 EBes01_SQ004_B06_R embryo sac, 4-6 D... 151 5e-035
gb|BQ758014.1|BQ758014 EBes01_SQ001_B04_R embryo sac, 4-6 D... 125 3e-027
gb|BF616598.2|BF616598 HVSMEc0010L09f Hordeum vulgare seedl... 68 5e-010
gb|BI948895.1|BI948895 HVSMEl0011E24f Hordeum vulgare spike... 68 5e-010
gb|BE194698.3|BE194698 HVSMEh0086I19f Hordeum vulgare 5-45 ... 64 8e-009
>gb|AL508293.1|AL508293 AL508293 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08F10V 5',
mRNA sequence
Length = 700
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 199 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 258
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 259 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 318
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 319 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 378
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 379 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 438
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 439 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 498
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 499 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 558
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 559 gcgctgggcctgctggtcataacatcgaaaga 590
>gb|AV924501.1|AV924501 AV924501 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14m22 5', mRNA sequence
Length = 667
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 217 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 276
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 277 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 336
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 337 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 396
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 397 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 456
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 457 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 516
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 517 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 576
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 577 gcgctgggcctgctggtcataacatcgaaaga 608
>gb|AV927834.1|AV927834 AV927834 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3o14 3', mRNA sequence
Length = 620
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Minus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 575 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 516
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 515 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 456
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 455 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 396
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 395 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 336
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 335 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 276
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 275 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 216
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 215 gcgctgggcctgctggtcataacatcgaaaga 184
>gb|AV929590.1|AV929590 AV929590 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14m22 3', mRNA sequence
Length = 698
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Minus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 554 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 495
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 494 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 435
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 434 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 375
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 374 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 315
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 314 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 255
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 254 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 195
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 194 gcgctgggcctgctggtcataacatcgaaaga 163
>gb|BM817120.1|BM817120 HC110B07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110B07_T3.ab1 similar to Leucyl aminopeptidase,Xaa-Pro
dipeptidase,Signal peptidase I,Methionyl
aminopeptidase,Membrane alanine aminopeptidase,Cytosol
non-specific dipeptidase,Peptidyl-dipeptidase
A,Tripeptide aminopeptidase,Penicillopepsin,Transferred
entry: 3.4.21.89,, mRNA sequence
Length = 905
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 272 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 331
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 332 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 391
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 392 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 451
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 452 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 511
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 512 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 571
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 572 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 631
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 632 gcgctgggcctgctggtcataacatcgaaaga 663
>gb|BQ460152.1|BQ460152 HA07B05r HA Hordeum vulgare subsp. vulgare cDNA clone HA07B05
5-PRIME, mRNA sequence
Length = 652
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 202 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 261
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 262 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 321
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 322 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 381
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 382 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 441
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 442 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 501
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 502 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 561
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 562 gcgctgggcctgctggtcataacatcgaaaga 593
>gb|BU970301.1|BU970301 HB14D20r BC Hordeum vulgare subsp. vulgare cDNA clone HB14D20
5-PRIME, mRNA sequence
Length = 638
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 140 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 199
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 200 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 259
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 260 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 319
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 320 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 379
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 380 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 439
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 440 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 499
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 500 gcgctgggcctgctggtcataacatcgaaaga 531
>gb|BU998847.1|BU998847 HI12F13r HI Hordeum vulgare subsp. vulgare cDNA clone HI12F13
5-PRIME, mRNA sequence
Length = 640
Score = 412 bits (208), Expect = e-114
Identities = 346/392 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 71 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 130
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 131 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 190
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 191 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 250
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 251 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 310
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 311 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 370
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 371 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 430
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 431 gcgctgggcctgctggtcataacatcgaaaga 462
>gb|BQ766601.1|BQ766601 EBro08_SQ006_G17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_G17 5', mRNA sequence
Length = 582
Score = 402 bits (203), Expect = e-111
Identities = 338/383 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 199 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 258
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 259 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 318
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 319 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 378
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 379 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 438
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 439 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 498
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 499 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 558
Query: 369 gcactgggcttgctggtcataac 391
|| |||||| |||||||||||||
Sbjct: 559 gcgctgggcctgctggtcataac 581
>gb|CB860013.1|CB860013 HI12F13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12F13
3-PRIME, mRNA sequence
Length = 647
Score = 402 bits (203), Expect = e-111
Identities = 338/383 (88%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 634 gttctttctggtagcatggagcctggatttaaaaggggtgatattctgtttttgcacatg 575
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 574 agccaagatcctatccgcactggagaaatagttgtttttaatattgatggccgtgaaatt 515
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| ||||| || |||||||| |||||||| || || | || |||||| || |||
Sbjct: 514 ccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaagttgatatc 455
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| |||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 454 ctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaagggcagctt 395
Query: 258 tggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctgg 317
||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||||||| |||
Sbjct: 394 tggcttcagaagcatcacattatgggacgggctgtaggctatctaccatatgttgggtgg 335
Query: 318 attacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactgggc 377
|||| ||| | ||||||||||| || ||||||||||||| |||||||| || ||||||
Sbjct: 334 gttactattgtgatgactgagaagccgattattaagtaccttctgattggcgcgctgggc 275
Query: 378 ttgctggtcataacgtcgaaaga 400
||||||||||||| ||||||||
Sbjct: 274 ctgctggtcataacatcgaaaga 252
>gb|AV931292.1|AV931292 AV931292 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e07 3', mRNA sequence
Length = 543
Score = 394 bits (199), Expect = e-108
Identities = 331/375 (88%)
Strand = Plus / Minus
Query: 26 tggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaaga 85
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct: 543 tggtagcatggagcctggatttaaaaggggtgatattctgtttttgcacatgagccaaga 484
Query: 86 tcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaattgt 145
|||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 483 tcctatccgcactggagaaatagttgtttttaatattgatggccgtgaaattccaattgt 424
Query: 146 ccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaa 205
||||| || |||||||| |||||||| || || | || |||||| || |||||||| ||
Sbjct: 423 tcaccgtgtgattaaggttcatgaacgccaagaaagtggagaagttgatatcctcacgaa 364
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 363 aggtgataataattttggggatgaccgacttttgtatgcacaagggcagctttggcttca 304
Query: 266 gcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaat 325
| | ||||||||||||||||| ||||| ||||| || ||||||||||| ||| |||| ||
Sbjct: 303 gaagcatcacattatgggacgggctgtaggctatctaccatatgttgggtgggttactat 244
Query: 326 tatcatgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctggt 385
| | ||||||||||| || ||||||||||||| |||||||| || |||||| |||||||
Sbjct: 243 tgtgatgactgagaagccgattattaagtaccttctgattggcgcgctgggcctgctggt 184
Query: 386 cataacgtcgaaaga 400
|||||| ||||||||
Sbjct: 183 cataacatcgaaaga 169
>gb|BG415596.2|BG415596 HVSMEk0007C06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007C06f, mRNA sequence
Length = 671
Score = 389 bits (196), Expect = e-106
Identities = 343/392 (87%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 193 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 252
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 253 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 312
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 313 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 372
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 373 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 432
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 433 tggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 492
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 493 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 552
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| | ||| ||||||||||||| ||||||||
Sbjct: 553 gcgcctggcctgctggtcataacatcgaaaga 584
>gb|AV926409.1|AV926409 AV926409 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e07 5', mRNA sequence
Length = 620
Score = 385 bits (194), Expect = e-105
Identities = 329/374 (87%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 247 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 306
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 307 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 366
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 367 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 426
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 427 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 486
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 487 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 546
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 547 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 606
Query: 369 gcactgggcttgct 382
|| |||||| ||||
Sbjct: 607 gcgctgggcctgct 620
>gb|BM098110.2|BM098110 EBpi03_SQ002_J08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_J08 5', mRNA sequence
Length = 624
Score = 385 bits (194), Expect = e-105
Identities = 346/394 (87%), Gaps = 2/394 (0%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 184 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 243
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 244 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 303
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 304 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 363
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 364 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 423
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 424 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 483
Query: 309 gtt-ggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattgg 367
||| || ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 484 gttggggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattgg 543
Query: 368 tgcactggg-cttgctggtcataacgtcgaaaga 400
|| ||||| | ||||||||||||| ||||||||
Sbjct: 544 cgcgctgggccctgctggtcataacatcgaaaga 577
>gb|BU982068.1|BU982068 HA25G22r HA Hordeum vulgare subsp. vulgare cDNA clone HA25G22
5-PRIME, mRNA sequence
Length = 569
Score = 385 bits (194), Expect = e-105
Identities = 329/374 (87%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 196 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 255
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 256 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 315
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 316 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 375
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 376 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 435
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 436 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 495
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 496 gttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattggc 555
Query: 369 gcactgggcttgct 382
|| |||||| ||||
Sbjct: 556 gcgctgggcctgct 569
>gb|CV061961.1|CV061961 BNEL74g8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL74g8 5' similar to signal
peptidase, putative, mRNA sequence
Length = 710
Score = 383 bits (193), Expect = e-105
Identities = 345/393 (87%), Gaps = 2/393 (0%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 208 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 267
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 268 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 327
Query: 129 c-gtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcaga 187
| ||||||| |||||||| ||||| || |||||||| |||||||| || || | || |||
Sbjct: 328 ccgtgaaat-ccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggaga 386
Query: 188 agtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcaca 247
||| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 387 agttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcaca 446
Query: 248 tgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccata 307
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || |||||
Sbjct: 447 agggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccata 506
Query: 308 tgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattgg 367
|||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 507 tgttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattgg 566
Query: 368 tgcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 567 cgcgctgggcctgctggtcataacatcgaaaga 599
>gb|CV057135.1|CV057135 BNEL24d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL24d4 5' similar to signal
peptidase, putative, mRNA sequence
Length = 602
Score = 381 bits (192), Expect = e-104
Identities = 335/383 (87%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 218 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 277
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 278 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 337
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| |||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 338 cgcgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 397
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 398 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 457
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 458 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 517
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| |||| ||| | ||||||||| | || ||||||||||||| ||||||||
Sbjct: 518 gttgggtgggttactattgtgatgactgagnagccgattattaagtaccttctgattggc 577
Query: 369 gcactgggcttgctggtcataac 391
|| || ||| |||||||||||||
Sbjct: 578 gcgcttggcctgctggtcataac 600
>gb|BQ657773.1|BQ657773 HA07B05u HA Hordeum vulgare subsp. vulgare cDNA clone HA07B05
3-PRIME, mRNA sequence
Length = 533
Score = 379 bits (191), Expect = e-103
Identities = 326/371 (87%)
Strand = Plus / Minus
Query: 30 agcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaagatcct 89
|||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 533 agcatggagcctggatttaaaaggggtgatattctgtttttgcacatgagccaagatcct 474
Query: 90 attcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaattgtccac 149
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 473 atccgcactggagaaatagttgtttttaatattgatggccgtgaaattccaattgttcac 414
Query: 150 cgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|| || |||||||| |||||||| || || | || |||||| || |||||||| ||||||
Sbjct: 413 cgtgtgattaaggttcatgaacgccaagaaagtggagaagttgatatcctcacgaaaggt 354
Query: 210 gacaataattttggggatgaccgactattatatgcacatgggcagctttggctccagcaa 269
|| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||| |
Sbjct: 353 gataataattttggggatgaccgacttttgtatgcacaagggcagctttggcttcagaag 294
Query: 270 catcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaattatc 329
||||||||||||||||| ||||| ||||| || ||||||||||| ||| |||| ||| |
Sbjct: 293 catcacattatgggacgggctgtaggctatctaccatatgttgggtgggttactattgtg 234
Query: 330 atgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctggtcata 389
||||||||||| || ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 233 atgactgagaagccgattattaagtaccttttgattggcgcgctgggcctgctggtcata 174
Query: 390 acgtcgaaaga 400
|| ||||||||
Sbjct: 173 acatcgaaaga 163
>gb|AV929597.1|AV929597 AV929597 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14n09 3', mRNA sequence
Length = 646
Score = 375 bits (189), Expect = e-102
Identities = 339/392 (86%)
Strand = Plus / Minus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 554 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 495
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| | ||||||||||||||| ||||| |||| |
Sbjct: 494 ttgcacatgagccaagatcctatccgcactgnagaaatagttgtttttaatattgatgnc 435
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || | | || ||||
Sbjct: 434 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaanaaagtggagaa 375
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| |||||||||| | |||||||||| || ||||||||
Sbjct: 374 gttgatatcctcacgaaaggtgataataattttgngnatgaccgacttttgtatgcacaa 315
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 314 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 255
Query: 309 gttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattggt 368
||||| ||| | || ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 254 gttggntgggtnactattgtgatgactgagaagccnattattaagtaccttctgattggc 195
Query: 369 gcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| |||||||
Sbjct: 194 gcgctgggcctgctggtcataacancgaaaga 163
>gb|BQ762174.1|BQ762174 EBro01_SQ005_D05_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_D05 5', mRNA sequence
Length = 599
Score = 369 bits (186), Expect = e-100
Identities = 347/397 (87%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 187 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 246
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 247 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 306
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 307 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 366
Query: 189 gtggacatcctcaccaaaggtgacaataatttt-ggggatgaccgactattatatgcaca 247
|| || |||||||| |||||||| ||||||||| |||||||||||||| || ||||||||
Sbjct: 367 gttgatatcctcacgaaaggtgataataattttgggggatgaccgacttttgtatgcaca 426
Query: 248 tgggcagctttggctccagcaacatcacattat-gggacgtgctgtgggctaccttccat 306
|||||||||||||| ||| | ||||||||||| |||||| ||||| ||||| || ||||
Sbjct: 427 agggcagctttggcttcagaagcatcacattatggggacgggctgtaggctatctaccat 486
Query: 307 atgtt--ggctggattacaattatcatgactgagaaaccatttattaagtacctgctgat 364
||||| || ||| |||| ||| | ||||||||||| || ||||||||||||| |||||
Sbjct: 487 atgttnggggtgggttactattgtgatgactgagaagccgattattaagtaccttctgat 546
Query: 365 tggtgcactgggcttgctggtcataacgtcgaaagat 401
||| || |||||| ||||||||||||| |||||||||
Sbjct: 547 tggcgcgctgggcctgctggtcataacatcgaaagat 583
>gb|BF618752.2|BF618752 HVSMEc0007K15f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007K15f, mRNA sequence
Length = 792
Score = 351 bits (177), Expect = 2e-095
Identities = 335/385 (87%), Gaps = 2/385 (0%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 251 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 310
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 311 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 370
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 371 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 430
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 431 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 490
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| |||| ||||| || ||||||
Sbjct: 491 gggcagctttggcttcagaagcatcacattatgggacggcctgtaggctatctaccatat 550
Query: 309 gtt-ggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattgg 367
||| || || |||| ||| ||||||||||| || ||||||||||||| ||||||||
Sbjct: 551 gttggggggggttactattgggatgactgagaagccgattattaagtaccttctgattgg 610
Query: 368 tg-cactgggcttgctggtcataac 391
| | |||||| |||||||||||||
Sbjct: 611 cgccgctgggcctgctggtcataac 635
>gb|BE454600.2|BE454600 HVSMEh0094K24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094K24f, mRNA sequence
Length = 996
Score = 343 bits (173), Expect = 6e-093
Identities = 272/305 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 251 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 310
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 311 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 370
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 371 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 430
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 431 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 490
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 491 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 550
Query: 309 gttgg 313
|||||
Sbjct: 551 gttgg 555
>gb|AV923126.1|AV923126 AV923126 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3o14 5', mRNA sequence
Length = 562
Score = 343 bits (173), Expect = 6e-093
Identities = 272/305 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 257 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 316
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 317 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 376
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 377 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 436
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 437 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 496
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 497 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 556
Query: 309 gttgg 313
|||||
Sbjct: 557 gttgg 561
>gb|BI952446.1|BI952446 HVSMEm0006H17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006H17f, mRNA sequence
Length = 825
Score = 341 bits (172), Expect = 2e-092
Identities = 324/375 (86%)
Strand = Plus / Plus
Query: 17 ggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatat 76
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 219 ggttctttctggtagcatggagcctggatttaaaaggggtgatattctgtttttgcacat 278
Query: 77 gagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaat 136
|||| |||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 279 gagccaagatcctatccgcactggagaaatagttgtttttaatattgatgggcgtgaaat 338
Query: 137 tccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacat 196
||||||||| ||||| || ||||||| |||||||| || || | || |||||| || ||
Sbjct: 339 tccaattgttcaccgtgtgattaagggtcatgaacgccaagaaagtggagaagttgatat 398
Query: 197 cctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagct 256
|||||| ||||| || ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 399 cctcacgaaaggggataataattttggggatgaccgacttttgtatgcacaagggcagct 458
Query: 257 ttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctg 316
|||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||||||| ||
Sbjct: 459 ttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatatgttgggtg 518
Query: 317 gattacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactggg 376
| || ||| | |||||||| || || ||||||||||||| |||||||| || |||||
Sbjct: 519 ggggactattgtgatgactgaaaanccgattattaagtaccttctgattggcgcgctggg 578
Query: 377 cttgctggtcataac 391
| ||||||| |||||
Sbjct: 579 cctgctggtgataac 593
>gb|BM375286.2|BM375286 EBem06_SQ002_O05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_O05 5', mRNA sequence
Length = 554
Score = 335 bits (169), Expect = 1e-090
Identities = 271/305 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 245 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 304
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 305 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 364
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 365 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 424
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 425 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 484
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| || | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 485 gggcagctttggcttcaaaagcatcacattatgggacgggctgtaggctatctaccatat 544
Query: 309 gttgg 313
|||||
Sbjct: 545 gttgg 549
>gb|BU979844.1|BU979844 HA17I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA17I05
5-PRIME, mRNA sequence
Length = 501
Score = 333 bits (168), Expect = 6e-090
Identities = 267/300 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 202 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 261
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 262 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 321
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 322 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 381
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 382 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 441
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 442 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 501
>gb|BU988661.1|BU988661 HF18F08r HF Hordeum vulgare subsp. vulgare cDNA clone HF18F08
5-PRIME, mRNA sequence
Length = 528
Score = 333 bits (168), Expect = 6e-090
Identities = 267/300 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 229 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 288
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 289 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 348
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 349 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 408
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 409 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 468
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 469 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 528
>gb|BU996898.1|BU996898 HI06C14r HI Hordeum vulgare subsp. vulgare cDNA clone HI06C14
5-PRIME, mRNA sequence
Length = 554
Score = 333 bits (168), Expect = 6e-090
Identities = 267/300 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 255 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 314
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 315 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 374
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 375 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 434
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 435 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 494
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 495 gggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccatat 554
>gb|AL511520.1|AL511520 AL511520 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08F10u 3',
mRNA sequence
Length = 545
Score = 317 bits (160), Expect = 3e-085
Identities = 295/339 (87%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 63 ctgtttttgcatatgagca-aagatcctattcgcacaggagaaatagttgttttcaatat 121
||||||||||| |||||| |||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 540 ctgtttttgcacatgagcccaagatcctatccgcactggagaaatagttgtttttaatat 481
Query: 122 cgatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacac 181
||||||||||||||||||||||| ||||| || |||||||| ||| |||| || || |
Sbjct: 480 tgatggccgtgaaattccaattgttcaccgtgtgattaaggttcatnaacgccaagaaag 421
Query: 182 tgcagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattata 241
|| |||||| || |||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 420 tggagaagttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgta 361
Query: 242 tgcacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctacct 301
|||||| |||||||||||||| ||| | ||||||||||||||||| ||||| ||||| ||
Sbjct: 360 tgcacaagggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatct 301
Query: 302 tccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgct 361
||||||||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||
Sbjct: 300 accatatgttgggtgggttactattgtgatgactgagaagccgattattaagtaccttct 241
Query: 362 gattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||| || |||||| ||||||||||||| ||||||||
Sbjct: 240 gattggcgcgctgggcctgctggtcataacatcgaaaga 202
>gb|BU988940.1|BU988940 HF19D13r HF Hordeum vulgare subsp. vulgare cDNA clone HF19D13
5-PRIME, mRNA sequence
Length = 495
Score = 299 bits (151), Expect = 8e-080
Identities = 238/267 (89%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 229 gttgtggtggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 288
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 289 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 348
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
||||||||||||||||| ||||| || |||||||| |||||||| || || | || ||||
Sbjct: 349 cgtgaaattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaa 408
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 409 gttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaa 468
Query: 249 gggcagctttggctccagcaacatcac 275
|||||||||||||| ||| | ||||||
Sbjct: 469 gggcagctttggcttcagaagcatcac 495
>gb|BM372965.2|BM372965 EBma04_SQ002_J06_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_J06 5', mRNA sequence
Length = 516
Score = 291 bits (147), Expect = 2e-077
Identities = 261/299 (87%)
Strand = Plus / Plus
Query: 102 gaaatagttgttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaag 161
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct: 1 gaaatagttgtttttaatattgatggccgtgaaattccaattgttcaccgtgtgattaag 60
Query: 162 gtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggtgacaataatttt 221
|| |||||||| || || | || |||||| || |||||||| |||||||| |||||||||
Sbjct: 61 gttcatgaacgccaagaaagtggagaagttgatatcctcacgaaaggtgataataatttt 120
Query: 222 ggggatgaccgactattatatgcacatgggcagctttggctccagcaacatcacattatg 281
|||||||||||||| || |||||||| |||||||||||||| ||| | ||||||||||||
Sbjct: 121 ggggatgaccgacttttgtatgcacaagggcagctttggcttcagaagcatcacattatg 180
Query: 282 ggacgtgctgtgggctaccttccatatgttggctggattacaattatcatgactgagaaa 341
||||| ||||| ||||| || ||||||||||| ||| |||| ||| | |||||||||||
Sbjct: 181 ggacgggctgtaggctatctaccatatgttgggtgggttactattgtgatgactgagaag 240
Query: 342 ccatttattaagtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|| ||||||||||||| |||||||| || |||||| ||||||||||||| ||||||||
Sbjct: 241 ccgattattaagtaccttctgattggcgcgctgggcctgctggtcataacatcgaaaga 299
>gb|AL505905.1|AL505905 AL505905 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N23V 5', mRNA sequence
Length = 455
Score = 289 bits (146), Expect = 8e-077
Identities = 267/306 (87%), Gaps = 3/306 (0%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| | |||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 134 gttgtggnggttctttctggtagcatggagcctggatttaaaaggggtgatattctgttt 193
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 194 ttgcacatgagccaagatcctatccgcactggagaaatagttgtttttaatattgatggc 253
Query: 129 cgtgaaattccaattgtccacc-gcgtaattaaggtccatgaacgtcaggacactgcaga 187
||||||||||||||||| |||| | || |||||||| |||||||| || || | || | |
Sbjct: 254 cgtgaaattccaattgttcaccagtgtgattaaggttcatgaacgccaagaaagtggana 313
Query: 188 agtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcaca 247
||| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 314 agttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcaca 373
Query: 248 tgggcagctttggctccagcaacatcacatt--atgggacgtgctgtgggctaccttcca 305
|||||||||||||| ||| | ||||||||| ||||||| ||||| ||||| || |||
Sbjct: 374 agggcagctttggcttcagaagcatcacatttattgggacgggctgtnggctatctacca 433
Query: 306 tatgtt 311
||||||
Sbjct: 434 tatgtt 439
>gb|BF628481.3|BF628481 HVSMEb0006D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006D18f, mRNA sequence
Length = 698
Score = 274 bits (138), Expect = 5e-072
Identities = 325/386 (84%), Gaps = 1/386 (0%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 162 gtggttct-tctggtagcatggagcctggattcaaaaggggtgatatcctgtttttgcgc 220
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 221 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgtgaa 280
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 281 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 340
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 341 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 400
Query: 255 ctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggc 314
|| ||||| ||||| |||||||| ||||| || ||||| ||||| ||||| | |||||
Sbjct: 401 ctgtggcttcagcagcatcacatcatggggcgggctgtaggctatcttccgcacgttggg 460
Query: 315 tggattacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactg 374
||| |||| ||| | ||||||||||| || | || |||||||| ||||| || || |||
Sbjct: 461 tgggttaccattgtgatgactgagaagccgatcatcaagtaccttctgatcggcgcgctg 520
Query: 375 ggcttgctggtcataacgtcgaaaga 400
||| ||||||| ||||| ||||||||
Sbjct: 521 ggcctgctggtgataacctcgaaaga 546
>gb|CV062596.1|CV062596 BNEL80g7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL80g7 5' similar to putative
signal peptidase subunit, mRNA sequence
Length = 699
Score = 266 bits (134), Expect = 1e-069
Identities = 278/326 (85%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 204 gtggttctttctggtagcatggagcctggattcaaaaggggtgatatcctgtttttgcgc 263
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 264 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgtgaa 323
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 324 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 383
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 384 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 443
Query: 255 ctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggc 314
|| ||||| ||||| |||||||| ||||| || ||||| ||||| |||||| | |||||
Sbjct: 444 ctgtggcttcagcagcatcacatcatggggcgggctgtaggctatcttccacacgttggg 503
Query: 315 tggattacaattatcatgactgagaa 340
||| |||| ||| | |||||||||||
Sbjct: 504 tgggttaccattgtgatgactgagaa 529
>gb|CV060436.1|CV060436 BNEL58b11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL58b11 5' similar to putative
signal peptidase subunit, mRNA sequence
Length = 537
Score = 254 bits (128), Expect = 4e-066
Identities = 309/368 (83%), Gaps = 1/368 (0%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 171 gtggttctttctggtagcatggagcctggattcaaaaggggtgatatcctgtttttgcgc 230
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 231 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgtgaa 290
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 291 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 350
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 351 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 410
Query: 255 ctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggc 314
|| ||||| || || |||||||| ||||| || ||||| ||||| |||||| | |||||
Sbjct: 411 ctgtggcttca-cagcatcacatcatggggcgggctgtaggctatcttccacacgttggg 469
Query: 315 tggattacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactg 374
||| |||| ||| | ||||||||||| || | || |||||||| ||||| || || |||
Sbjct: 470 tgggttaccattgtgatgactgagaagccgatcatcaagtaccttctgatcggcgcgctg 529
Query: 375 ggcttgct 382
||| ||||
Sbjct: 530 ggcctgct 537
>gb|BU980725.1|BU980725 HA21H24r HA Hordeum vulgare subsp. vulgare cDNA clone HA21H24
5-PRIME, mRNA sequence
Length = 312
Score = 248 bits (125), Expect = 3e-064
Identities = 207/233 (88%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 80 gtggttctttctggtagcatggagcctggatttaaaaggggtgatcttctgtttttgcac 139
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaata-tcgatggccgtga 133
|||||| |||||||||| ||||| ||||||||||||||||| |||| | |||||||||||
Sbjct: 140 atgagccaagatcctatccgcactggagaaatagttgtttttaatacttgatggccgtga 199
Query: 134 aattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtgga 193
|||||||||||| ||||| || |||||||| |||||||| || || | || |||||| ||
Sbjct: 200 aattccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaagttga 259
Query: 194 catcctcaccaaaggtgacaataattttggggatgaccgactattatatgcac 246
|||||||| |||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 260 tatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcac 312
>gb|CB858204.1|CB858204 HI06C14w HI Hordeum vulgare subsp. vulgare cDNA clone HI06C14
3-PRIME, mRNA sequence
Length = 538
Score = 248 bits (125), Expect = 3e-064
Identities = 236/273 (86%)
Strand = Plus / Minus
Query: 128 ccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcaga 187
|||||||||||||||||| ||||| || || ||||| |||||||| || || | || |||
Sbjct: 538 ccgtgaaattccaattgttcaccgtgtgatgaaggttcatgaacgccaagaaagtggaga 479
Query: 188 agtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcaca 247
||| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 478 agttgatatcctcacgaaaggtgataataattttggggatgaccgacttttgtatgcaca 419
Query: 248 tgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccata 307
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||| || |||||
Sbjct: 418 agggcagctttggcttcagaagcatcacattatgggacgggctgtaggctatctaccata 359
Query: 308 tgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgattgg 367
|||||| ||| |||| ||| | ||||||||||| || ||||||||||||| ||||||||
Sbjct: 358 tgttgggtgggttactattgtgatgactgagaagccgattattaagtaccttctgattgg 299
Query: 368 tgcactgggcttgctggtcataacgtcgaaaga 400
|| |||||| ||||||||||||| ||||||||
Sbjct: 298 cgcgctgggcctgctggtcataacatcgaaaga 266
>gb|AV916947.1|AV916947 AV916947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20d06 5', mRNA sequence
Length = 450
Score = 242 bits (122), Expect = 2e-062
Identities = 239/278 (85%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 170 gtggttctttctggtagcatggagcctggattcaaaaggggtgatatcctgtttttgcgc 229
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 230 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgtgaa 289
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 290 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 349
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 350 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 409
Query: 255 ctttggctccagcaacatcacattatgggacgtgctgt 292
|| ||||| ||||| |||||||| ||||| || |||||
Sbjct: 410 ctgtggcttcagcagcatcacatcatggggcgggctgt 447
>gb|BU980189.1|BU980189 HA18P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P01
5-PRIME, mRNA sequence
Length = 438
Score = 240 bits (121), Expect = 6e-062
Identities = 232/269 (86%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 169 gtggttctttctggtagcatggagcctggattcaaaaggggtgatatcctgtttttgcgc 228
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 229 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgtgaa 288
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 289 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 348
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 349 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 408
Query: 255 ctttggctccagcaacatcacattatggg 283
|| ||||| ||||| |||||||| |||||
Sbjct: 409 ctgtggcttcagcagcatcacatcatggg 437
>gb|CB858274.1|CB858274 HI06G14w HI Hordeum vulgare subsp. vulgare cDNA clone HI06G14
3-PRIME, mRNA sequence
Length = 528
Score = 236 bits (119), Expect = 1e-060
Identities = 227/263 (86%)
Strand = Plus / Minus
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| ||||| || |||||||| |||||||| || || | || |||||| || |||
Sbjct: 528 ccaattgttcaccgtgtgattaaggttcatgaacgccaagaaagtggagaagttgatatc 469
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| |||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 468 ctcacgaaaggtgataataattttggggatgaccgacttttgtatgcacaagggcagctt 409
Query: 258 tggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctgg 317
||||| ||| | ||||||||||||||||| ||||| ||||| || ||||||||||| |||
Sbjct: 408 tggcttcagaagcatcacattatgggacgggctgtaggctatctaccatatgttgggtgg 349
Query: 318 attacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactgggc 377
|||| ||| | ||||||||||| || ||||||||||||| |||||||| || ||||||
Sbjct: 348 gttactattgtgatgactgagaagccgattattaagtaccttctgattggcgcgctgggc 289
Query: 378 ttgctggtcataacgtcgaaaga 400
||||||||||||| ||||||||
Sbjct: 288 ctgctggtcataacatcgaaaga 266
>gb|BU988354.1|BU988354 HF17G09r HF Hordeum vulgare subsp. vulgare cDNA clone HF17G09
5-PRIME, mRNA sequence
Length = 480
Score = 234 bits (118), Expect = 4e-060
Identities = 274/326 (84%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 119 gtggttctttctggtagcatgttgcctggattcaaaaggggtgatatcctgtttttgcgc 178
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||||| || || || || ||||||||||||||||| ||| | ||||| || |||
Sbjct: 179 atgagcaaagaacccatccgtactggagaaatagttgtttttaatgttgatggtcgcgaa 238
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
||||||||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| |||
Sbjct: 239 attccaattgttcaccgtgtgattaaggttcatgaacgccaggaaagtgctgaagttgac 298
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
|||||||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 299 atcctcacaaaaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacag 358
Query: 255 ctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggc 314
|| ||||| ||||| |||||||| ||||| || ||||| ||||| ||||| | |||||
Sbjct: 359 ctgtggcttcagcagcatcacatcatggggcgggctgtaggctatcttccgcacgttggg 418
Query: 315 tggattacaattatcatgactgagaa 340
||| |||| ||| | |||||||||||
Sbjct: 419 tgggttaccattgtgatgactgagaa 444
>gb|BF631450.3|BF631450 HVSMEb0015P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015P19f, mRNA sequence
Length = 626
Score = 232 bits (117), Expect = 2e-059
Identities = 294/353 (83%)
Strand = Plus / Plus
Query: 48 aaaaggggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaata 107
||||||||||||||||||||||||| ||||||||||| || || || || |||||||||
Sbjct: 8 aaaaggggtgatatcctgtttttgcgcatgagcaaagaacccatccgtactggagaaata 67
Query: 108 gttgttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggtccat 167
|||||||| ||| | ||||| ||||||||||||||||| ||||| || |||||||| |||
Sbjct: 68 gttgtttttaatgttgatggtcgtgaaattccaattgttcaccgtgtgattaaggttcat 127
Query: 168 gaacgtcaggacactgcagaagtggacatcctcaccaaaggtgacaataattttggggat 227
||||| ||||| | ||| ||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 128 gaacgccaggaaagtgctgaagttgacatcctcacaaaaggtgacaacaatttcggggat 187
Query: 228 gaccgactattatatgcacatgggcagctttggctccagcaacatcacattatgggacgt 287
|||||||| | || || || || ||||| ||||| ||||| |||||||| ||||| ||
Sbjct: 188 gaccgactgctgtacgcgcacggacagctgtggcttcagcagcatcacatcatggggcgg 247
Query: 288 gctgtgggctaccttccatatgttggctggattacaattatcatgactgagaaaccattt 347
||||| |||| ||||| | ||||| ||| |||| ||| | ||||||||||| || |
Sbjct: 248 gctgtaggctgtcttccgcacgttgggtgggttaccattgtgatgactgagaagccgatc 307
Query: 348 attaagtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|| |||||||| ||||| || || |||||| ||||||| ||||| ||||||||
Sbjct: 308 atcaagtaccttctgatcggcgcgctgggcctgctggtgataacctcgaaaga 360
>gb|AV918196.1|AV918196 AV918196 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20d06 3', mRNA sequence
Length = 728
Score = 218 bits (110), Expect = 2e-055
Identities = 311/376 (82%), Gaps = 3/376 (0%)
Strand = Plus / Minus
Query: 28 gtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaagatc 87
|||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct: 728 gtagcatgnagcctggattcaaaaggggtgatatcctgtttttgcgcatgagcaaagaac 669
Query: 88 ctattcgc--acaggagaaatagttgttttcaatatcgatggccgtgaaattccaattgt 145
| || | || ||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct: 668 cccatcccgtactggagaaatagttgtttttaatgttgatggtcgtgaaattccaattgt 609
Query: 146 ccaccgcgtaattaaggtccatgaacgtc-aggacactgcagaagtggacatcctcacca 204
||||| || |||||||| |||||||| | |||| | ||| ||||| ||||||||||| |
Sbjct: 608 tcaccgtgtgattaaggttcatgaacgccaaggaaagtgctgaagttgacatcctcacaa 549
Query: 205 aaggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcc 264
|||||||||| ||||| |||||||||||||| | || || || || ||||| ||||| |
Sbjct: 548 aaggtgacaacaatttcggggatgaccgactgctgtacgcgcacggacagctgtggcttc 489
Query: 265 agcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaa 324
|||| |||||||| ||||| || ||||| ||||| ||||| | ||||| ||| |||| |
Sbjct: 488 agcagcatcacatcatggggcgggctgtaggctatcttccgcacgttgggtgggttacca 429
Query: 325 ttatcatgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctgg 384
|| | ||||||||||| || | || |||||||| |||||||| || ||||| ||||||
Sbjct: 428 ttgtgatgactgagaagccgatcatcaagtaccttctgattggcgcgctgggtctgctgg 369
Query: 385 tcataacgtcgaaaga 400
| ||||| ||||||||
Sbjct: 368 tgataacctcgaaaga 353
>gb|BI950558.1|BI950558 HVSMEl0021F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021F09f, mRNA sequence
Length = 543
Score = 206 bits (104), Expect = 9e-052
Identities = 275/332 (82%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| |||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 209 gttgtggtggttctttctggtagcatggagcctgtatttaagaggggtgatattctgttt 268
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| || ||||||| ||||| ||| |||||||||||| ||||| ||||||
Sbjct: 269 ttgcacatgagccaatatcctatccgcactggacaaatagttgtttctaatattgatggc 328
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|||||||| |||||||| ||||| || |||||||| ||||| | || || | | | |
Sbjct: 329 cgtgaaatcccaattgttcaccgtgtgattaaggttcatgatctccaagagagcggatat 388
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || ||||| || | |||||| ||| ||| ||||||||||||||| || | ||||||
Sbjct: 389 gtcgatatcctgacgagaggtgataattattgtggggatgaccgacttttgtgtgcacaa 448
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
||||| |||||||| ||| | ||| ||||||||||||| ||||| |||| || ||||||
Sbjct: 449 gggcatctttggcttcagaagcattacattatgggacgggctgtacgctatctaccatat 508
Query: 309 gttggctggattacaattatcatgactgagaa 340
||||| ||| |||| ||| | |||||||||||
Sbjct: 509 gttgggtgggttactattgtgatgactgagaa 540
>gb|AL503150.1|AL503150 AL503150 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N23u 3', mRNA sequence
Length = 474
Score = 168 bits (85), Expect = 2e-040
Identities = 184/217 (84%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 185 agaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgc 244
|||||| || |||||| | |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 439 agaagttgatatcctcgcgaaaggtgataataattttggggatgaccgacttttgtatgc 380
Query: 245 acatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggcta-ccttc 303
|| |||||||||||||| ||| | ||||||||| ||||||| ||||| ||||| ||| |
Sbjct: 379 ncaagggcagctttggcttcagaagcatcacattntgggacgggctgtaggctatcctac 320
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||| ||| ||| || | ||| | ||||||||||| || ||||||||||||| ||||
Sbjct: 319 catatgntgggtgggttcctattgtgatgactgagaagccgattattaagtaccttctga 260
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaaga 400
|||| || |||||| ||||||||||||| | ||||||
Sbjct: 259 ttggcgcgctgggcctgctggtcataacatngaaaga 223
>gb|BM099716.2|BM099716 EBes01_SQ004_B06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ004_B06 5', mRNA sequence
Length = 274
Score = 151 bits (76), Expect = 5e-035
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct: 140 gttgtggtggttctttctggtancatggagcctggatttaaaaggggtgatattctgttt 199
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||||| |||||| |||||||||| ||||| ||||||||| ||| || ||||| ||||||
Sbjct: 200 ttgcacatgagccaagatcctatccgcactggagaaatacttgcctttaatattgatggc 259
Query: 129 cgtgaaattccaatt 143
|| ||||||||||||
Sbjct: 260 cgcgaaattccaatt 274
>gb|BQ758014.1|BQ758014 EBes01_SQ001_B04_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_B04 5', mRNA sequence
Length = 189
Score = 125 bits (63), Expect = 3e-027
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 270 catcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaattatc 329
||||||||||||||||| ||||| ||||| || ||||||||||| ||| |||| ||| |
Sbjct: 12 catcacattatgggacgggctgtaggctatctaccatatgttgggtgggttactattgtg 71
Query: 330 atgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctggtcata 389
||||||||||| || ||||||||||||| |||||||| || |||||| |||||||||||
Sbjct: 72 atgactgagaagccgattattaagtaccttctgattggcgcgctgggcctgctggtcata 131
Query: 390 acgtcgaaaga 400
|| ||||||||
Sbjct: 132 acatcgaaaga 142
>gb|BF616598.2|BF616598 HVSMEc0010L09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010L09f, mRNA sequence
Length = 843
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 155 gttgtggtggttctttctggtagcatggagcctggatttaaaaggg 200
>gb|BI948895.1|BI948895 HVSMEl0011E24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011E24f, mRNA sequence
Length = 850
Score = 67.9 bits (34), Expect = 5e-010
Identities = 89/106 (83%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 131 tgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagt 190
||||||||||||||| ||||| || |||||||| ||||||| ||||| | ||| ||| |
Sbjct: 275 tgaaattccaattgttcaccgtgtgattaaggttcatgaacaccaggagagtgctgaatt 334
Query: 191 ggacatcctcaccaaaggtgacaataattttgg-ggatgaccgact 235
||||||||||| |||||||||| ||||| | ||||||||||||
Sbjct: 335 tgacatcctcactgaaggtgacaacaatttcgccggatgaccgact 380
Score = 61.9 bits (31), Expect = 3e-008
Identities = 142/179 (79%)
Strand = Plus / Plus
Query: 42 ggatttaaaaggggtgatatcctgtttttgcatatgagcaaagatcctattcgcacagga 101
||||| |||||||||||||| ||||| |||| |||| |||||| || || || || |||
Sbjct: 186 ggattcaaaaggggtgatatgctgttgttgcgcatgaacaaagaacccatccgtactgga 245
Query: 102 gaaatagttgttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaag 161
||||| | |||| | ||||| | ||||||||||||||| ||||| || ||||||
Sbjct: 246 gaaatcctcccccccaatgttgatggtcttgaaattccaattgttcaccgtgtgattaag 305
Query: 162 gtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggtgacaataattt 220
|| ||||||| ||||| | ||| ||| | ||||||||||| |||||||||| |||||
Sbjct: 306 gttcatgaacaccaggagagtgctgaatttgacatcctcactgaaggtgacaacaattt 364
>gb|BE194698.3|BE194698 HVSMEh0086I19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086I19f, mRNA sequence
Length = 612
Score = 63.9 bits (32), Expect = 8e-009
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| |||||||| ||||| | |||||| |||||||| |||||||| ||||| ||||||
Sbjct: 209 gttgtggtggttctttctggaa-catggagcctggattaaaaaggggagatattctgttt 267
Query: 69 ttgcatatga-gcaaagatcctattcgcacaggagaaatagttgtttt 115
||||| |||| || || || ||||||| || ||| |||||||||||||
Sbjct: 268 ttgcacatgacgccaaaat-ctattcgaactggaaaaatagttgtttt 314
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,467
Number of Sequences: 312970
Number of extensions: 56467
Number of successful extensions: 14499
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14422
Number of HSP's gapped (non-prelim): 56
length of query: 870
length of database: 175,134,539
effective HSP length: 19
effective length of query: 851
effective length of database: 169,188,109
effective search space: 143979080759
effective search space used: 143979080759
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)